>input_sequence_75423
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------------------------------------ATGAGGAACGGCAGCACCGTGTGCGACGCGGCGGCGGC------
GCTGGGCGTGGCCCCGCGGTACAGGGGGGTGAGGAAGCGGCCGTGGGGCCGGTTCGCGGCGGAGATCCGGGACCCAGCCA
AGCGGGCGCGGGTCTGGCTCGGCACCTACGACTCCGCCGAGGCCGCCGCCCGCGCCTACGACGTCGCCGCGCGCACCCTC
CGCGGCCCGCTCGCCACCACCAACTTCCCCCAGGACCTCGTCTCCTTCCCCACCCTCCCCGCGCTCCCGCGTCCGTCTCG
ACCGGCTTCCCCCGGCCCCGCCTGCAGCGCCAGCTCCACCGTCGAGTCCTACAGCGGGCCCAGGGCGACGAACGGGCCCC
GGGCCGTGCCACGCGCGCCGGCGCCGGCGCCTGTGCTGGCGAAGCGACCAGACGGCGACGCTGGCTGCCAGAGCGACTGC
GCCTCCTCGGCCTCCGTCGTGGACGACGGCGGCGACGAGGCCGCCTCGGCCGCCGTCCGGCCTCGCGCGCCCTTCGTGTT
CGACCTCAACCTCCCTCCGCCGTCGGACGAGCTGTGCACCGAGCTGCGGCTCTTCTAG----------------------
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>chr2B_1_TraesCS2B01G572500
ATTTGAATATCTTCCGTGCCCGCCACAGTAGAACAGGCTCTAGCCCACAAGTAAATGATGAACCGACGCAGTAGAGTACT
GACCGCCCCCAACAAAACGCAGACGGCCGGCTGAAATTCGTAATTTACTACTGCC---GCAATAATGAATTCCGCCAGAC
GCCCGTAATTTCCACCGCT------------------------------GAATACACTTGAATTTCGTCAGGCGTCGCCC
GTGACAGTGAGGCTGCGTCTGCGTGGCCGCCGCAGCACGGCGCACGGAGGATAC-----GATCCAACCCGATCCAATCCA
ACCCTACCCCCGC--------CTACCCAGCGTCACGTACTCCCCACGCTGCACCGCGGGGCGGTTG----------GATT
TGAACGCCACCGCATCTCGGCGCGCAGTCTGCCGCC-CTGTGGAGTCGATCCGATCCGATCTAGAGTAGTCTAGTGCGGG
CGGAGCGCGCTCCACGTCGCGGACAGCGCACCCACAGCGGGCGAGCGAGCTACGCGTAGTCGTCCGTCACACTGGAGCGG
CGGCACAAGC-----GAAACGTGTTATCCCTGCTGCCGACGCGGGAGAACAAAGTAAACTCGGCGAAGACCGGTCTCGTC
TGGGAGG-----AGAGTGAGGCCGAAGGGTGCGGAAGGTGGGAAGAAGCGGCCGCCCACCAACG----CTGAGCTATCCC
TCCCGCCCCGCGCGTCGCCTCCCACCCCACCACGCACCCGCACGCGCCTCCTCCCCCTTCTTCTACCCCCCCTCCCCCGC
CCCTTCACACCATCACAGCCCACCCCACCGCGCCGCCTTCTCCCAGCTCCACCACAGCGGC--GGCTCCCTCTGCGCGGA
GTCAACAAGTCAAGCCTTTCTCAAGCTCAGAACAGGCAGGACGCCCGGCGCCGGCGGCCAGATCACACGCGTCCCAGCTC
GGACAAGCCTCGCCTTCTGGTGATAGCCAATAGCCAGGCCAGGCGCGTCTCGGTGCGGAAGCAGACGAGGAGCTAGCTCA
AGGAGTGAAGCCACAGCCGGTCGGCGTCCTA---CTATGAGGAACGGCAGCACCGTGTGCGACGCGGCGGCGGC------
GCTGGGCGTGGCCCCGCGGTACAGGGGGGTGAGGAAGCGGCCGTGGGGCCGGTTCGCGGCGGAGATCCGGGACCCAGCCA
AGCGGGCGCGGGTCTGGCTCGGCACCTACGACTCCGCCGAGGCCGCCGCCCGCGCCTACGACGTCGCCGCGCGCACCCTC
CGCGGCCCGCTCGCCACCACCAACTTCCCCCAGGACCTCGTCTCCTTCCCCACCCTCCCCGCGCTCCCGCGTCCGTCTCG
ACCGGCTTCCCCCGGCCCCGCCTGCAGCGCCAGCTCCACCGTCGAGTCCTACAGCGGGCCCAGGGCGACGAACGGGCCCC
GGGCCGTGCCACGCGCGCCGGCGCCGGCGCCTGTGCTGGCGAAGCGACCAGACGGCGACGCTGGCTGCCAGAGCGACTGC
GCCTCCTCGGCCTCCGTCGTGGACGACGGCGGCGACGAGGCCGCCTCGGCCGCCGTCCGGCCTCGCGCGCCCTTCGTGTT
CGACCTCAACCTCCCTCCGCCGTCGGACGAGCTGTGCACCGAGCTGCGGCTCTTCTAGGAGGGATCCACCGGACCCGGAT
CGCCGGACGAGCTGTGCACCAAAGCTAGCGACTTTTTTTATTTTTCTTCCATTCTTTTTCCTCCTG---ATTAGATTAGA
CAGATGATGTGTGCAAGAGTT----GATTGTACCACCACC---ACTACTATTCTTTACGCGATAAGAATTGCGGTTGATT
GATCGAT-----------GGAGATTTGGGGCCAATTTTTTGCGGTCTCAAGAGTTGATTTTTCCTCGCCCACTTGGATGC
AACTTTATGGATGTCTTGCGTGCAAGTGTGACCGGAGAGCATTTGCAGCAACTTTGCGAATTGCGGGCAAGAAATGCTTC
GAATACGACCGCTAAATTGTTTAGTGGT----GGGGTTTGAGATGTTCTAT--TTGGGCCTAGTGGTTTATTCATTGTTT
TCTTTGCCCACTTT---CCTCCCTGGTTT---------------TTTT-------TTTTGAGGGGTTTCTTCTGAATTCG
AACTGGACTGAAGAT---TCATCTTTGCCAACATTAGACTGCTACGGTCAGTAACGAGATTAATACCTACGGGTCCACCA
ATTTGAATACCGGTTTGGAAGAAA--------------------------------------------------------
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TATTACCAAAATAACTGGATTGCATACGCAAGCTTTCGAAGCATATGCGAGTTCTCTATATTCAAACCAATAAATGGGAA
CGCAAGCTGCCAAAGCATATCCGAGTTTTTATACGAGAAACAGAGAGCACAGATCATAGCTCCCTCTGTTTCTATACTCT
CTGTCTTTTAGAAGAAGAAAAACGCAAGCTCTCAAAACTCAAACAAATAAGGGCATCTCTAAGACGGACACGCGAACCGC
CCGCATCCGTCCAGACAGCGGAAACCATTCAACGTGGGACTGTATCGATACATGAAGTGGTCCGGACGTCATTTCTTTCG
TAAACCGGAGACAAAAGTGAGGGAGTTTTAGGGTAGTTCACCACCAGGGACGAAGCTAGAAAAAATAGGCACTGGTGTCA
ACCGTTGCCCACAATTGCAAAGATTATAAATAACATTTGAGGGCAATGT
>chr2A_82
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-ACCACCCCGAACAAAACGCAGACGGCTGGGATTACA--GTAATTTACTACTACTGTGGCAATAATGAATTCCGCCAGAC
GCCCGTAATTTCCACCGCCGAATACACTTCAATTCCACCCGCAAAAAAAGAATACACTTCAATTCCGTCAGGCGTCGCCC
GTGACAGTGAGGCCGCGTCTGCGTGCCAGCCGCAGCACGGCGCACGGAGGATACGATCCGATCCAACCCAACCCAACCCA
ACCCTACCCCC-----------TACCCAGCGTCACGTACTCCCCACGCTGCGCCGCTGGGCGGGGCGGGGCGGTTCGATT
TGAACGCCACCGAATCTCGGCGCGCAGTCTGCCGCCCCTGTGGAGCCGATCCGATCCGA----------TCTAGTGCGGC
CGGAGCGCGCTCCACGTCGCGGACAGCGCACCCACAGCCGGCGAGCGAGCTACGCGTAGT---------------AGCGG
CGGCACAAGCCAAAGGAAACGTGTTATCCCTGCTGCCGACGCGGGAGAACAAAGTAAACTCGGCGAAGACCGGTCTCGTG
TGGGAGGGAGGGAGAGTGAGGACCAAGGGTGCGGAAGGTGGGAAGAAGCGGCCGCCCACCAACGCTGGCTGAGCTATCCC
TCC-----CGCGCGTCGCCTCCCACCCCACCACGCACCCGCACGCGCCTCCTCCCCCTTCTTCTA-CCCCCCTCCCCCGC
CCCTTCACACCATCACAGCCCACCCCACCGCGCCGCCTTCTCCTAGCTCCGACACAGCGGC--AGCCCCCTCTGCGCAGA
GTCAACAAGTCAAGCCTTTCTCAAGCCCAGAGCAGGGTAGACGCCCGGCCTGACCAGCTCGGGGCAGCAC----------
-------CCTCGGCCTCCGGTGATAGCCACTAGCCAGC-----CGCGTCTCGGCGAGGAAACAGCGGGAGCT--------
--GGCTCAAGCGATTGCCGGCCGGCGTTCTACTACTATGAGGAACGGCAGCACCGTGTGCGACGCGGCGGCGGCTGTGGG
ACTGGGCGTGGCGCCGCGGTACAGGGGCGTGCGGAAGCGGCCGTGGGGCCGGTTCGCGGCGGAGATCCGGGACCCGGCCA
AGCGGGCGCGGGTCTGGCTCGGCACCTACGACTCCGCCGAGGCCGCCGCCCGCGCCTACGACGTCGCCGCGCGCACCCTC
CGCGGCCCGCTCGCCACCACCAACTTCCCCCACGACCTCGTCTCCTTCCCCACGCTCCCCGCGCTGCCGCGTCCGTCTCC
ACCGGCTTCCCCCGGCCCCGCCTGCAGCGCCAGCTCCACCGTCGAGTCCTACAGCGGGCCCAGGGCGGCGAACGCGCCTC
GGGCCGTGCCGCGCGCGCCAGCGCCGACGCCCTTGCTGGCGAAGCTCCCAGGCGGCGACGCAGGATGCCAGAGCAACTGC
GCCTCCTCGGCCTCCGTCGTGGACGACGCCGGCGACGAGGCTGCCTCGGCCGTCGTCCGGCCGCGCGCGCCCTTCGTGTT
CGACCTCAACCTCCCGCCGCCGTCGGACGAGCTGTGCACGGAGCTGCGGCTCTTCTAGGACGGATCCACCGGACCCGGAT
CGCCGGACGAGCTGTGCGCCAAAGCTAGCGATTTT--AATTTTTTCTTCTATTCTTTTTCCTCCTG---ATTAGATTAGA
CAGATGATGTGTGCAAGAGAAGACCGATTGTACCACCAGCACTACTACTATTCTTTACGCGATAAGAATTGCGGTTGATT
GATTGAT-----------GCCCAAATTTTGCGATCTGATT--------AAGAGTTGATTTTTGCTTGCCCACTTGGATGC
AACTTTATGGACATCTTGCGTGCGAGTGTAACCGGAGAGCATTCGCAGCAACTTTGCGAATTGCGAGCAAGAAATGCTTC
GAATACGACCGCTGAATTGTTTACTAGTGGTGGGGTTTTGAGATGTTCTAGCCTTCGCCCGAGTGGTTCATTCA-CCTTT
CCTTTGCTCCCTCCCTCCCTCCCTGGTATTTCTTCTGTGTTATATTTT-------TTTGCAGGGTTTTCTTCTGTATTCA
GACTGGACTGATGGTTCCTCTTTTTTGCCAACACTGCACTGCTACGGCCAGTAACGAGATTAATACTTATGGGCCCACCA
ATTTGAAGAAGATGGTGGATCATGTTCTGGGTTTGTGTTTCATAGATTTTGAGGAGTTTCATGGCGTGTTC-----TAAC
ATGTGGATGACATATCAGCGATGTAGCCGCGTCGAGCTCGGGTGAAAAGGTGATTTGTTTTTTTTATTCGTTGATGCTG-
CTCTGGTTATGCCGGAGTTAGATGACGAATGTTGGTGACAAGCTCAAAAGATTCTTCATTCTAATTTTCTTTCTTGACTA
GTGTTTCCTTTTATAAAGTCAAGCGTTCTACTATTTTTACAGTTTTGTCAGGTCAATATTTACTTGAATTGTATTATATT
CTTCATGATATAAAAAGACATGTATCATCAT---AAAAAAACACTACTAAACTGC------------------------C
TATTGGCCCACCAATTTGAACGCCGTTTGAAATAAATATTGCTCCCTACAAACCACATTACTTATCGCTGATTTAGTAGT
AGCAGTACCGATAATAGTCTTTTAAAAAACATACCGGTATTACTCCCTCTGAT--------------------TTACTTG
TAGTACCGAAATAACTAGATTGCTTATGCAACCTTCCAAA-CATATGCGAGTTCTCTATATTCAAACCAAATAATCTGAA
TGCGAGCTCCCTAAG-----------------------------------------------------------------
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>chr2D_162
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----GTAATTTGCACCGCCGATATA--------------------------------TTCAATTTGGTCAGGCATCGCCC
GTGACAGTGAGGCTGCGTCTGCGTGCCAGCCGCAGCACGGCGCACGGAGGATACGATCCGATCCAATCCAATCCAATCCA
ACCCTACCCCCGCGGCCCCGCCTACCCAGCGTCACGTACTGACCACGCTGCACCGCAGGGCGGGGCGGGGCGGTTCGATT
TGAACGCCACCGAATCTCGGCGCGCAGTCTGCCGCCCCTT-----CCGATCCGATCCGATCTAGTCTAATCTAGTGCGGC
CGGAGCGCGCTCCACGTCGCGGACAGCGCACCCACAGCCGGCGA----GCTACGCGTAGTCGTCCGTCACACTGGAGCGG
CGGCACAACCGAAAGGAAACGTGTTATCCCTGCTGCCGACGCGGGAGAACAAAGTAAACTCGGCGAAGACCAGTCTCGTG
TGGGAGGTAGGGAGAGTGAGGTTGAAGGGTGCGGAAGGTGGGAAGAAGCGGCCGCCCACCAACG----CTGAGCTATCCC
TCCCG-CCCGCGCGTCGCCTCCCACCCCACCACGCACCCGCACGCGCCTCCTCCCCCTTCTTCTA-CCCCCCTCCCCCGC
CCCTTCACACCATCACAGCCTTCTTC------CCGCCGCCTCTCAGCTCCAGCACCGCGGCTCGGCTCCCTCTACCCAGA
GCCAAAGAATCAAGGCTGTTTGAAGCTCG------------------------------AGATCACGCGCGTTTCATTCA
GCCCCTCTGGTGGTGG--------------TAGCCAGGCCGAGACAGTCACCGGGCGGAAGG------------AGCGGA
AGGACTGAAGCCTCAGCGGGCCGGCGATCTACTACTATGAGGAACGGCAGCACCGTGTGCGACGCGGCGGCGGCTGTGGG
GCTGGGCGTGGCGCCGCGGTACAGGGGGGTGCGGAAGCGGCCGTGGGGCAGGTTCGCGGCGGAGATCCGGGACCCGGCCA
AGCGGGCGCGGGTCTGGCTCGGCACCTACGACTCCGCCGAGGCCGCCGCGCGGGCCTACGACGTCGCCGCGCGCACCCTC
CGCGGCCCGCTCGCCACCACCAACTTTCCCCAGGACCCCGTCTCCTTCCCCACGCTCCCCACGCTCCCGCATCCGTCTCG
ACCGGCTTCCCCCGGCCCAGCCTGCAGCGCCAGCTCCACCGTCGAGTCCTACAGCGGGCCCAGAGCCGCGAACGCGCCTC
GGGCCGTCCCGCGCGTGTCAGCGCCGGCACCTTTGCTGGCGGAGCGCTCCGGCGGCGACGCAGGATGCCAGAGCGACTGC
GCCTCGTCGGCCTCCGTCGTGGACGACGGCGGCGACGAGGCCGCCTCGGCCGCCGTCCGGCCTCGCGCGCCCTTCGTGTT
CGACCTCAACCTCCCGCCGCCGTCGGACGAGCTGTGCACCGAGCTACGGCTCTTCTAGGATA----CACCGGACCCGGGT
CGCCGGACGAGCTGCGCACCAAAGCTAGCGATTTT--TTATTTTTCTTCTATTCTTTTTCCTCCTGATTATTAGATTAGA
CAGATGATGCTGTGTGC--AAGAGCGATTGTACCACCACC---ACTACTATTCTTTACGCGATAAGAATTGCGGTTGATT
TGATTGACGGAGATTTGCGCCCAAATTTTGCGATCTGATT--------AAGAGTTGATTTTTGCTTGCCCACTTGGATGC
AACTTTATGGATATCTTGCGTGCAAGTGTAACCCGAGAGCATTTGCAGCAACTTTGTGAATTGTT---------------
------------------------TAGTGGTGGGGTTTGAGATGTTC---------------------CATTCA-TGTTT
CCTTTGCTCCCTCCCTCCCT----GCTGTTTCTTCTGTACTATTTTTTAATTTTATTTGCAAGGGTTTCTTCTGTATTCA
AACTGGACTGAAGAT---TCCTCTTTGCAAACACTGCACTGCTACGGTCAGTAA---GATTAATACCTATGGGCCCACCA
ATTTGAAGAAGATGGTGGATCACGTTCTGGGTTTGTGGTTCGTGGATTTTGATGAGTTCGATGGCGTGTTCGCGGATAAC
ATGTGGGTGATATATCAGCGTTGTACT-GCGTCGAGCTCGGGTGAGAAGGTGATTTGTCATTTTTATTCATTGATGGCTT
CTCTGGTTGTGCCGGAGTTAGGTGACAAATGTTGCTGACAAGCTCAAAAGATTCTTCATTGTAATTTTCTTTCTTGACTA
CTGTTT--TTTTTTTAAGTTTAGCGTTCTGCTATCTTTACAGTATT--------AATATTTACTTGACTTGTACTATATT
CTTCGGGATATAAAAGGACACGTATATCACCATAAAAAGAACACTACTACACTGCTACAGTCAGTAACGAGATAAATACC
TATTGGCCCACCAATTTGAACACCGTTTGAAATAAATATTACTTCCTCCAAACCACATTACTTATCACTGATTTAGTTGT
AGTACCGAT----ATACTCTTTTAAAAAACATATCAGTGTTACTCCCTCTGATCCATATTACTTATCGCCGATTTACTTG
TAGTACCGAAACAACTAGATTGCTTATGCAACCTTCCAAAGCATATGCGAGTTCTCTATATTCAAACCAAATAATCCGAA
TGCAAGCTCCCTAAG-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---S----S-----------------S--SSSS-SSSS-------------S-S-------------------------
------------------S----------------------------------------S--------------------
-------------------------S-S-----------------------------------------S----------
--------------------------------------------------------S------SSS--------------
------------S--------------------------------S------------------SS--S----------S
--------------------------------------S-----------------------------------------
-------------------------------------------------------------------------------S
---------------------S----------------------------------------------------------
-----S-----------------------------------------------------------S--------------
---------------------------------------------------S-------------------------S--
-------------------------------S----SSS----------SSSSS-S--S-------S-----SS--SSSS
-SS-SSS-----S-S--S-----------S----------SS-----------S----------SS-SS-SSSS---SS-
----S---------------S------S----------------------------------------------------
------------S------------------S-------------------------------------------S----
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-----------------------------------------------------S--------------------------
-------------------------------------------------------------------S------S---S-
----------S--------S------------S-------------S----S---------S--S---------------
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---------------S--------------------------------------------S-------------------
-------------------------------S---SS------------S------------------------------
-------------------SS-----------------------------------------------------------
---S---------------SSS-SS-SSS--S-SS-SS--SSSSSSSS--------------S--S--------------
------------S----------------S-----------------------------------S--------------
-------------S---------S-S---------S--------------S----S-S--S-------S-----S-----
S------S-S--SS-------------S------------------------------SS--------------S----S
--------------------S------------S-SS--------------------------------S---S------
-------S-SSSSSS----SS-SS--------------------------------------------------------
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--S----S--------S------S--S----S---S-S--------------------------------SS---SS---
S-------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_990
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----------CGCCTTCTGGTGATAGCCAA--------------------------------------------------
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>reverse_3185
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----------------------------------------------------------------ATAGGCACTGGTGTCA
ACCG---------------------------------------------
