>input_sequence_75409
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----------------------------------------------ATGAGCGAGGCACCCGCGACGACCGCCGCCGCCG
GAGACGACCCTGACGCCACCGCCACCGCCAATCAG---CAGCAGCAGCA------GCAGACGCAGGCGCAGCCCGAGACG
CAGGACGACGCGGACCAGCTGTCGGAGCTGCGGCAGATCTTCCGGTCCTTCGACCGCAACAAGGACGGCAGCCTAACGCA
GCTGGAGCTGGGCTCCCTCCTTCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCTCGACGCCCTCATCCACCGCGCCG
ACACCAACTCCAACGGCCTCGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCTCCCCCGAGCTCCTCGACGACCGCTCCCCC
TACTCCGAGGACCAGCTCCGCAGGCTCTTCGAGATCTTCGACCGCGACGGCAACGGCTTCATCACCGCCGCCGAGCTCGC
CCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGCCAAGGAGCTCACCGGAATGATCGAGGAGGCCGACACCGACGGCG
ACGGCCGGATAAACTTCCGTGAGTTCTCCCGCGCCATCACGGCCGCCGCCTTCGACAACGTCTTCTCCTGA---------
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>chr1B_1_TraesCS1B01G208700
CGAGCTAATCTAGTAGAGGCTTACTAGGGACATAGTGTAGTTTATGTATTCACACATGTATTTAAGTTTTCGGTCAATAC
AATTCCAGCATGAATGATAAATATTTATCATGAACGGGAAATATGGTAATAACCATATTATTATTGCCTCTAGGGCATAT
TTCCAACAGTTAAGGCTCGGTCAGAGAGAAGGAGAGTCCACGGCAGTTTGCTTCTTTGGAGACATGCGCACTTGGTATCC
AATGAATGAACCGTGAGGAC-GGGTCAACAAATAAAATAAAAAACTGGAGCAAAGGAGTGCCACAGGAAAAACTCGGAGT
GGGAGGCGGGAGATTAGTGCGTGGGTGATATTTTCTTTTCTTACTTTGTAATAGGTTGGTTCATAATTCCTTCTTTTTAT
ATTGAGTAGATTAAATAGCTCGGATTAAACTTAGTTAAGTAGTGAATTTTATATTGAATATATTATAACAAATTGGATCA
AACTTAATTCATGCTTTTTTA-TATTGAATATATTAAATAGCTTGGATTAAACTTAAGCTGCTATTTTATATTGACTGCA
TTTTTTATAAATCGGATCAAACTTAATTCGTGCCTTTTATACTTGATATTTATGCTTAAATGAAGGAATATATATATAGA
TATAAATGAATTTTTTTTCCTTTGTCCGG----ATATGCAATAATTGGTATTTTTTAAATGCGGCAAGATAAATTCGAAC
CAACCATTTTGCGGCTTCTCTTTCTTCGCCGTGGTGTAATATATACCCGGTGCATTTCAACTATGCGGGGCACGTCGCCA
TGATCAATTGATCAGAGGAGCTCGAGTACAATCGTGTCCGTCTTCCCCGATCCGCCTCTCCGACGCGCCAACTTCCTCGT
AGCTGCCAGTCCCCCGCCTTCTCCGCGCGCACCACCCAAAATTCTCCCGACCCAACAACCTCCAACGCTCTCGACCGCCC
CCTCTTCCTCTTCCTCCTCCCAGCCTCCCGATCGCTCCAGTGCGCCATGAGCGAGGCACCCGCGACGACCGCCGCCGCCG
GAGACGACCCTGACGCCACCGCCACCGCCAATCAG---CAGCAGCAGCA------GCAGACGCAGGCGCAGCCCGAGACG
CAGGACGACGCGGACCAGCTGTCGGAGCTGCGGCAGATCTTCCGGTCCTTCGACCGCAACAAGGACGGCAGCCTAACGCA
GCTGGAGCTGGGCTCCCTCCTTCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCTCGACGCCCTCATCCACCGCGCCG
ACACCAACTCCAACGGCCTCGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCTCCCCCGAGCTCCTCGACGACCGCTCCCCC
TACTCCGAGGACCAGCTCCGCAGGCTCTTCGAGATCTTCGACCGCGACGGCAACGGCTTCATCACCGCCGCCGAGCTCGC
CCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGCCAAGGAGCTCACCGGAATGATCGAGGAGGCCGACACCGACGGCG
ACGGCCGGATAAACTTCCGTGAGTTCTCCCGCGCCATCACGGCCGCCGCCTTCGACAACGTCTTCTCCTGACCGAGCCGT
CGACCTGAGAGAGGCCCGCCCATCCATCGCCTTCAACCTCCGTGCGGATTCGATCCATGTCGCGCGTCATCATCGATCGC
GCCCTGTTGGTGTCCGTGCTTCTCTCGATCGTTTGTGTTCTTGTCCGGGGACGGGGAGGTCAGTGATCAGATAATTTTTA
GGCTGCAGGTGTTGGTGAGATGAGCTGTTGTGTGTTATGAATAACAAACAGATTAAACAAACCCAGAATGACAGTGGCAA
GATTACTTTAGGGGTCAAGGAATGAATTGTCCATGCAAAATGCACATTGTGTTTGTTGATTAATTTGCTCCCGTCAATCG
ATCGTCCTAAATCTCGCAAGATGGTCATCTGATGCTCACATAAATCAAGTGTTCGACATTATTTAAGGATAAGGAGAATT
TGTCCATGAATGGTTGGGTCCATTATTAGTGACTT-----------------------------GTTCTTTGTTCATGTT
GTCCAAGGAGGCAAGGACGAAGAGACGGCCGTCCTGATGTGCAGAGCATCGGATCTCCGTTTTTTTTTGTGCTGCCGTCT
ACCATGTCGTAC--------------------------------------------------------------------
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-------------GTACAAAACAAATTCAGCGCATGGCTGGCAGCCATTGCCTTTTTTA----TTAGGTTTTGTGTGAGC
TGTTGAAGTATTCCTGTGATCACTCGTGTTGAACGGATCATGCGTGC----CTTTCACCACCAGCTATAGCCGTCGGGTT
GCCTGGCCAGATTCCAGTGAAAAGTCTCAATGTGTCTCGACTATGATTTGGCCAGATAGATAGCTATCTGCTGGTCCCTA
TATCCTATGCCCTGTAGCTGCAATCATTCTTGTTTTAAAGGTGGATGGTCTCTCGTGTCCAACTAATTTGGACATAATAA
CAACTGAAGAAGTTGAGTTGTATGTTATTTTGC-----------------------------------------------
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----------------------------------TGCACGACTATATTTTGTTTGGGCCATTCACAATTGAGCTTAGAAG
ACGGATATGAAAGCCCCGGGGAAAGCGCAAAGGAAAAATATGGTACTTTAAAGGAAGACTTGGAAAAAGA
>chr1A_193
AGAGGT--------------------------------------------------------------------------
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--------------------------------------CACGGTAGTTTCCTTCTTTGAAGACATGTGCACTTGTGGTTC
AATGAATGAACTGGGAGGAGGGGGTCAGCAAATAAAATAAAAAACTGGAGCAAAGGAGTTCTGGGGGAAAAACTCGGAGT
GGGAGGCGGGAGATTAGTGCATGGGTGATATTTTCTTTT-TTACTTTATAATAGGTTGGTTCATAATTCGTT-TTTTTAT
ATTAAGTAGATTAAATAGCTCAGATCAAACTTAATTAAGTAGTGAATTTTATATTGAATATACTATAACAAATTGGATCA
AACTTAATTCATGCTTTTT-A-TATTGAATATATTAAATAGCTTGGATTAAACTTAAGCTGCTATTTTATATTGACTGCA
TTTTTTATAAATCGGATCAAACTTAATTCGTGCCTTTTATACTTGATATTTATACTTGAATGAAGGA--ATATATATAGA
TATAAATGAAATTTTTT--CTTTGTCCGGATATATATACAATAATTGGTGATTTGTAAATGCGGCAAGATAAATCCGAAC
CAACCATTTTGCGGCTTCTCTTTCTTCGCCGTGGTGTAATATATACCCGGTGCATTTCAACTATGCGGAGCACGTCGCCA
TGATCAATTGATCAGGGGAGGTCCAGTACAATCGTGTCCGTCTTCCCCGATCCGCCTCTCCGGCGCGCCAACTTCCTCGT
AGCTGCCAGTCCCCCGCCTTCTCCGCGCGCACCACCCAAAATTCTCCCGACCCAACAACCTCCAACGCTCTCGACCGCCC
CCTCTTCCTCTTCCTCCTCCCAGCCTCCCGATCGCTCCAGTGCGCCATGAGCGAGGCACCCGCGACGACCGCCGCCGCCG
GAGACGACCCTGACGCCACCGCCACCGCCAATCAG---CAGCAGCAGGCGCAGGCGCAGGCGCAGGCGCAGCCCGAGACG
CAGGACGACGCGGACCAGCTGTCGGAGTTGCGGCAGATCTTCCGGTCCTTCGACCGCAACAAGGACGGCAGCCTGACGCA
GCTGGAGCTGGGCTCCCTCCTCCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCTCGACGCCCTCATCCACCGCGCCG
ACACCAACTCCAACGGCCTCGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCTCCCCCGAACTCCTCGACGACCGTTCCCCC
TACTCCGAGGACCAGCTCCGCAGGCTCTTCGAGATCTTCGACCGCGACGGCAACGGCTTCATCACCGCCGCCGAGCTCGC
GCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGCCAAGGAGCTCACCGGAATGATCGAGGAGGCCGACACTGACGGCG
ACGGCCGGATCAACTTCCGTGAGTTCTCCCGCGCCATCACCGCCGCCGCCTTCGACAACGTCTTCTCCTGACCGAGCCGT
CGACCTGAGAGAGGCCCGACCATCCATCGCCTTCAACCTCCGTGCGGATTCGATCCATGTCGCGCGTCATCATTGATCGC
GCTCTGTTGGTGTCCGTGCTTCTCTCGATCGTTTGTGTTCTTGTCCGGGGACGGGGAGGTCAGTGATCAGATAATTTTTA
GGCTGCAGGTGTTGGTGAGATGAGCTGTTGTCTGTTATGAATAACAAACAGATTGAACAAACCCAGAATGACAGTGGCAA
GATTACTTTAGGGGTCAAGGAATGAATTATCCATGCAAAATGCACATTGTGTTTGCTGATTAATTTGCTCCCGTCAATCG
ATCGTCCTAAATCTCGCAAGATGGTCATCTGATGCTCACATAAATCAAGTGTTCGACATTATT-AAGGATAAGGAGAATT
TGTCCATGAATGGTTGGGTCCATTATCAGTGACTTTGTTCTTTTTTTTTGCGGGGAGTGACTTTGTTCTTTGCTCATGTT
GTC--------CAAGGACGAAGAGACGGCCGTCCTCATCCGTCTGCGAATAAGTGTACATCTAGTTTTGGTCCTAAGTCA
AAATATTAAAACTTTGACCAACTTCATAAGAAAAAATAACAGCATTTATGACACTAAAGTAGTACCAATTTGATGTCATA
TATGCTATTACTATTTTTTATAGAATTGGTCAAATTTTAAAACATCAGACTTAGAACAAAACGTAGAAGTATACTTATTC
GTGGACGGAGGGAGTACAAAACAAATTCAGCGCATGGCTGGCAGCCATTGCCTTTTTATTAGGTTAGGTTTTGTGTGAGC
TGTTGAAGTATTCCTGTGATCACTCGTGTTGAACGGATCATGCGTGGTTATCTTTCACCACCAGCTGTAGCCGTCGGGAT
GCCTGGCCAGATTCCAGTGAAAAGGCTCAATGTGTCTCGAGTATGATTTGGCCAG----ATAGCTGTCTGCTGGTCGCTA
TTTCTTATGCCCTGTAGCTGCAATCATGCTTGTTTTAAAGGTGGATGGTCTCTCGTGTCCAACTAATTTGGACATAATAA
CAACCGAAGAAGTTGAGCTGTATGT-------------------------------------------------------
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--------------------------TATTTTGTTGCACGACTATATTCTGTTTGGGCCATTCACAGTTGAGCTGAGAAG
AAGAATATGACAGCCCTGGGGAGAGCGCAAAAGAAAAATATGATACTTTAAAGGAAGACTTGAAAGAAGA
>chr1D_241
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AATGAATGAACCGGGAGGAGGGGGTCAACAAATAAAATAAAAAGCTGGAGCAAAGGAGTACTAGGGGGAAAACTCGGAGT
GGGAGGCGGGAGATTAGTGCGTGGGTGATATTTTCTTTT-TTACTTTGTAATAGATTGGTTCATAACTCGTTCTTTTTAC
ATTGAGTAGATTAAATAGCTCGGATTAAACTTAATTAAGTAGTGAATTTTATATTGAATATG-TATAACAAATTGGATCA
AACTTAATTCATGCTTTTT-AATATTGAATATATTAAATAGCTTGGATTAAACTTAAGCTGCTATTTTATATTGACTGCA
TTTTTTATAAATCGGATCAAACTTCATTCGTGCCTTTTATACTTGA-------------ATGAAGGA--ATATATATAGA
TATAAATGATTTTTTTT--CTTTGTCCGA----ATATACAATAATTGGTAATTTATAAATGCGGCAAGAATAATTCGAAC
CAACAATTTTGCGGCTTCTCTGTCTTCGCCGTGGTGTAATATATACCCGGTGCATTTCAACTATGCGGAGCACGTCGCCA
TGATCAATTGATCAGGGGAGCTCCAGTACAATCGTGTCCGTCTTCCCCGATCCGCCTCTCCGGCGCGCCAACTTCCTCGT
AGCTGCCAGTCCCCCGCCTTCTCCGCGCGCACCACCCAAAATTCTCCCGACCCAACAACCTCCAACGCTCTCGACCGCCC
CCTCTTCCTCTTCCTCCTCCCAGCCTCCCGATCGCTCCAGTGCGCCATGAGCGAGGCACCCGCGACGACCGCCGCCGCCG
GAGACGACCCTGACGCCACCGCCACCGCCAATCATCATCAGCAGCAGCAGCAGGCGCAGGCGCAGGCGCAGCCCGAGACG
CAGGACGACGCGGACCAGCTGTCGGAGCTGCGGCAGATCTTCCGGTCCTTCGACCGCAACAAGGACGGCAGCCTGACGCA
GCTGGAGCTGGGCTCCCTCCTCCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCTCGACGCCCTCATCCACCGCGCCG
ACACCAACTCCAACGGCCTCGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCTCCCCCGAGCTCCTCGACGACCGCTCCCCC
TACTCCGAGGACCAGCTCCGCAGGCTCTTCGAGATCTTCGACCGCGACGGCAACGGCTTCATCACCGCCGCCGAGCTCGC
GCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGCCAAGGAGCTCACCGGAATGATCGAGGAGGCCGACACCGACGGCG
ACGGCCGGATCAACTTCCGTGAGTTCTCCCGCGCCATCACCGCCGCTGCCTTCGACAACGTCTTCTCCTGACCCAGCCGT
CGACCTGAGAGAGGCCCGCCCATCCATCGCCTTCAACCTCCGTGCGGATTCGATCCATGCCGCGCGTCATCATCGATCGC
GCTCTGTTGGTGTCCGTGCTTCTCTCGATCGTTTGTGTTCTTGTCCGGGGACGGGGAGGTCAGTGATCAGATAATATTTA
GGCTGCAGGTGTTGGTGAGATGAGCTGTTGTGTGTTATGAATAACAAACAGATTAAACAAACCCAGAATGGCAGTGGCAA
GATTACTTTAGGGGTCAAGGAATGAATTATCCATGCAAAATGCACATTGTGTTTGTTGATTAATTTGCTCCCGTCAATCG
ATCGTCCCAAATCTCGCTCGATGGCCATCTGATGCTCACATT------GTGTTCGACATTACT-AAGGATAAGGAGAATT
TGTCCATGAATGGTTGGGTCCATTATTAGTGACTT-----------------------------GTTCTTTGTTCATGTT
GTCCAAGGAGGCAAGGACGAAGAGACGGCCGTCCTGATGTGCAGAGCATCGGATCTCCG-TTTTTTTTGCGCTGCCGTCT
ACCATGTCGTAC--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GTACAAAACAAATTCAGCGCATGGCTGGCAGCCATTGCCTTTTTATTAGGTTAGGTTTTGTGTGAGC
TGTTGAAGTATTCCTGTGATCACTCGTGTTGAACGGATCATGCGTGGTTATCTTCCACCACCAGCTGTAGCCGTCGGGTT
CCCTGGCCAGATTCCAGTGAAAAGGCTCAATGCGTCTCGACTATGATTTGGCCAGATAGATAGCTGTCTGCTGGTCCCTG
TTTCTTATGCCCTGTAGCTGCAATCATTCTTGTTTTAAAGGTGGATGGTCTCTCGTGTCCAACTAATTTGGACGTAATAA
CAACTGAAGAAGTTGAGTTGTATGTTACTCCCTATGTTCCTAAATATTTGACTTTTTAAATATTTTAAATGGACTACCAC
ATACGGATGTATATAAACATATTTTAGAGTATAGATTCACTCATTTGCTCCGTATGTAGTCACTTGTTGAAATCTCTAGA
AAGACAAATATTAGGAACGGAGGGAGTATTTTGTTGCACGACTATATTTTGTTTGGGCCATTCACAATTGAGCTCAAACG
ACGAATATGACAGCCCCCGGGAAAGCGCAAAGGAAAAATAGGGTACTTTAACGGAAGACTTGGAAGAAGA
>SNPs
S---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----S--------S-------S-------SSS-S-
-------------S-----S---------------------------------------S-S-SS---------------
---------------------------------------S-----------------------------S----------
---------------------------------S----------------------------S-----------------
-------------------S------------------------------------------------------------
-----------------------------------------------------S---S---------SS-----------
-----------------SS------------------S------------S---S-------------------------
--------------------------------------------------------------------S-----------
---------------S-------S--------------------------------------S-----------------
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-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------S-----
---------------------S----------------------------------------------------------
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S-------------------------------------------------------------------------------
----------S-----------------------------S---------------------------------------
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--S-----------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
---------------------------------------------------------------S----------------
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---------------------------------------------------------------------S----------
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---------------------------------------------------------SS---------------------
----------------------------------------------S-------------------S-------------
------------------------S----------------------------------------S--------------
-S--S---------------------------------------------------------------------------
---------------------------S-SSSS-----------------------------------------------
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--------------------------------------------------------------------------S-----
---S------S------------------------------------------------------S----
>forward_219
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---------------------------------------ACGGCAGTTTGCTTCTTTGG---------------------
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>reverse_2150
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---------------------------------------------------------------------TGCTGCCGTCT
ACCATGTC------------------------------------------------------------------------
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