>input_sequence_75405
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--------------------------------------------------------ATGCCAATGCCTGCACCATACCAT
ACAGCAGCA---ACTCAGGGCAGAGCAATGCTCCATTCCATGGCGCCCCTCCACGCCGCCGCCGCCGCCGCCGCGCAGCA
CGCAGCCGTCGGCGCGGCTCCGGGCAGAGATGCTGCCCCGAAGAAGAGCAGCGGCAGCGTTCCAGCCGGACGCGACACCA
GGAGGTTCATTTCATTTCCAACTGTCCTTTTTCTCTGAGAACATGTGGTCGATGCGTATCATCAGTAATATCTACCCTTG
ATGCCTTCTTATCGCA----------CGCAGGGCGTTCCTGAACGGCGTGGTGATCGCCGCTGCCGGCGCCGGCGCGCTG
CTGGGCCACGTGGACGCGGCGCCGGCGGCCTCCAAGAGGCGGGCCCCGCCGCCGCCGACGGAGGAGAAGGAGAAGAAGGA
CCCCAACCTCAGCGGCGTGCAGGCCAAGGTGTTGGCCAGCAGGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGC
TGCGGGAGAAGGGGAAGGAGCCCGCGGACGCCGCCAGCACCGTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTA
GAGTGA--------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G304800
GTGTCCTTGAGTTTAAATACTCGGCCACTCCAACCAGACGTACAACTGTCACAGCAGTTGAAACTGGTCTACCAAATCAT
TGTCTTCACCAAGTCAACTGGTTCTATTTCCTCAACTCTTTCATTTCCTCGTTCATGTGTCGATGAACCTGATCATTACT
GTTTGAAGACTTTGACTAAAGATTTTCTCTATTTCCTCAATCCAATTTCTTCAGTCACATAGTCTTCAGCCTGTTTATCC
TGTTTTCATGATATCTGTACTCTGCGTTTGTTTTCATTTCATCATGATGACTATGTTGTTGCTCTGTTATGCTTATACCT
AATTACTTATTCCGTTG--------------CTTAGGAATTTCTTCACCTAGATATTCCTCAGTGACGAATTTGTAAAAA
TCGTCTATTCACCCCCCTCCCCCCCTCTAGTCGATATAACGCACTTTCATACGACTGATTTCTGGACGACACGAAATTGC
AGCCATATACCCGTGTTGTTGAGTGGGCTACAACCGCTGATCCTAAGTGTCGTGTGATTTTTGTTCTCCACTCCATCGCC
CGCACATTAATTCCGAAACTTAGAACTTGGTGTGACGTCCTGCAAAATCCAACGACTTTGCATATCACGAGGCAATAGAG
CGTCTGAACACGTGTAGGTAGGTGTGTGCTCGTGCGAGTTTTCAGGCCTTGTCGCCTATGCATAAGCTGATTTAGTGATT
GGACATTCTGTTCACAATTAATAGAAAAAAAGCCATTTATCGTTCTAAAAAAATAGGCATTGGACATTCCTCGGTCGATC
CACAAATTCGAGTGCCAATTCCGTCTGCGTCCTTTATCCACGTGTTGTTTACTCTTTGCACTGCGGCACGCCGGCACAAC
AATAGCATATGCTTTCGGGGCCTTATCCATGTCACGGGATCGCAGCCAATGGGAACGTGACATGACGCCTCCGTGGGGC-
ACGTCTATCTCCCTCCC-TTGGTTGCATCTGCACTTTCAGAGGCATTGACGCGCTTATGCCAATGCCTGCACCATACCAT
ACAGCAGCA---ACTCAGGGCAGAGCAATGCTCCATTCCATGGCGCCCCTCCACGCCGCCGCCGCCGCCGCCGCGCAGCA
CGCAGCCGTCGGCGCGGCTCCGGGCAGAGATGCTGCCCCGAAGAAGAGCAGCGGCAGCGTTCCAGCCGGACGCGACACCA
GGAGGTTCATTTCATTTCCAACTGTCCTTTTTCTCTGAGAACATGTGGTCGATGCGTATCATCAGTAATATCTACCCTTG
ATGCCTTCTTATCGCA----------CGCAGGGCGTTCCTGAACGGCGTGGTGATCGCCGCTGCCGGCGCCGGCGCGCTG
CTGGGCCACGTGGACGCGGCGCCGGCGGCCTCCAAGAGGCGGGCCCCGCCGCCGCCGACGGAGGAGAAGGAGAAGAAGGA
CCCCAACCTCAGCGGCGTGCAGGCCAAGGTGTTGGCCAGCAGGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGC
TGCGGGAGAAGGGGAAGGAGCCCGCGGACGCCGCCAGCACCGTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTA
GAGTGAGTTTGTTATGGGTGCTGCTTAATTT-------------------------------TTTACCAACTACTCATTT
CTCAATGAGGAGCACATAACGGAGATCGATCCACCATATCTTAGCGTAAATATTTACTGAG-TGAGTATCGTTTTGCTGC
GTGC-----------------------TTCAATTGATGCGCTACTATCTGTGAATA----ACCTGGCAATGCCAGTACCA
GC----CAATGATGAACAACGTAGATGAAGTTCACCAAGCAAAAATT---------------------------------
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------------------------TCGCTTTGGAACTTGATCTTCACCACGCAAGTTTGCCGGCTAATTTCCGTCAGACT
ATGTTCAAACTTATGATACTGATACTACC---AAAAATGGTATACATGCCAGATCTTTCTTGGAGAAAAAAAATTCAAAA
TACATGGCATTCC---------------------TATACAAAAATTACTC------------------CTATA-------
-TCTGGAGAGTTCAAATAAACTTGTGTGCATCATCTAGTACATCAGAACAGAGGTAGTGCGTAGGCTAGCTCCTAGATAC
AATGGACCTGCCAGTAATAAACTTTGGGCGCTTCTTGAATCCACTAATCTGCTTTTGAAGTTCCTTCTCCAGCTTCGGTT
TGTCACCGCAACTTGTCAGGACAAGTTCATTCAGGTTTTGGAGGA---CCAGCACAAGGGACAAGCCCTCCTTACTGTCG
TCCAAGTTAACGCATTTCTTCACTTCAAGTTTCTCGAGCACAGGCAATGCACCATCCTTGATTTGTATGGTCACGATGTT
CTCCATCCCTTCAATGTAAAGCAGTTTGAGCTTCGGAAATGTACCTTCTCCAAAACATAACGTCTTCTCGGCGAAGGACT
CCTCCCAGAGTGCAAGAAGAGTAAGGTTGCGCAGCTTCCCCATCACCTCGATGTCAACCTGCTTCAATTGTGTCTGAATC
AGCTTTACCTTGGCCAGATCGTTGAGACGATCCATCCAGCCAGGGAGGTTGCCCAAACGGCCACACAGGCGCAGTGATAG
GAGATGCTTTGGTGGCATTTCCTCTGCTTTCTCTGCTTCCTTCAGAAATTCAAGCGACC---------------------
-------------------------
>chr5D_8
TGT-------GTTTAAATACCTAGCCGCTCCAACCAGACGTACAACTGTCATAGCAGTTGGAGCTGGCCTACCAAATCAC
TGTCTTCATCGAGCT-ACTCGTTCTATTTCCTCAACCCTTCCATTTCCTCATTCATATACTGTTGCACTTGATCGTTACT
GTTTGAAGACTCTGACTGAAGACTTTCTCAATTTCCTCATTCCAAATTCTTCAGTCACCTTGTCTTCAGCCTGCTTATCC
TGTGTTTACGCTACTTGTACTATGTGCTTGTTTTCATTTCATCATGATGACTGTGCTACTACTCTGTTATGCTTGCATCT
GAATACTTATTCCGCTAATTGTTGTTCGTAACTTAGGAATTTCCTCACCTTGAAATTCCTCAGTGACGAATTTGTAAAAA
TCGCCTATTCACCCCCC-CCCCCCCTCTAGTCGATATAACGCACTTTCACAACCGGCTATGGTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNACTATGTGCTTGTT---------------------------------------------------------
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-----TTCATTTCATCATGATGACTGTGCTACT-----------------------------------------------
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-----ACTCTGTTATGCTTGCATCTGAATAC-------------------------------TTATTCCGCTAATTGTTG
TTCGTAACTTA---------------------------------------------------------------------
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-------------GGAATTTCCTCACCTTGAAATTCCTCAGTGACGAATTTGTAAAAATCGCCTATTCACCCCCCCCCCC
CTCTAGTCGATATAACGCACTTTCA
>chr5A_852
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-----------------------------------------------------------------GCACTGCGGCACAAC
AATCGCATATGCTTTCGGGGCCTTATCCATGTCACGGGATCGCAACCAATGGGAACGTGACATGACGCCTCCGTGGGGCC
ACGTCTATCTCCCACCCTTTGGTTGCATCTGCAGTTTGAGAGACATGCACATGCTTATGCCAATTGCTGCACTACACCAT
ACAGCAGCAGCAACTCAGGGCAGAGCAATGCTCCATTCCATGGCGCCCCTCCA---CGCCGCCGCCGCCACTGCGCAGCA
CGCAGCCGTCGGCGCAGCTCCGGGCAGAGATGCTGCTCCGAAGAAGAACGGCGGCTGCGTTCCAGCCAACCGCGACACCA
GGAGGTTCAG-------CCAACTGTTTTTTCTCTTACGATTCATGTGACGCGTCTTTGTGTTTCAGACAGCGGCCACATC
CTTTGTTTCTGATGTGTACTTGGTGTCGCAGGGCGTTCCTGAGCGGCGTGGCGATCGCCGCTGCCGGCGCCGGCGCGCTG
CTGGGCCACGTGGACGCGGCGCCGGCGGCCTCCAAGAGGCGGGCCCCGCCACCGCCGTCGGAGGAGAAGGAGAAGAAGGA
CCCCAACCTCAGCGGCGTGCAGGCCAAGGTGTTGGCCAGCAGGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGC
TGCGGGAGAAGGGGAAGGAGCCCGCGGACGCGGCCAGCACCGTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTA
GAGTGAGTTTGTGTTGGGTGCCGC-------------------------------CGCTTAATTTACCAGCTTCTCATTT
GTCGATGAGGAGCACATAACAGAGATCGATTCGCCATATCTTAGCATAAATATTTACCCAA-TGAGTATCGTTTTGCTGC
CTGCGATGGAAG--------TACACGCTTGAATTGATGCGCTCTTATCTGTGAATA----ACCTGGCAATGCCAGTACCA
GACAGTCAATGATAAACAACGTAGATGAAGTTCACCAAGCAAAAATTC--------------------------------
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-------------------------CGCTCTGGAACTTGACCTTCGCCAAGCAACTCTGCCGGCTAATTTGCGTAAGAAT
ACGTTCAAACTTGTGATACTGATATTACCAAAAAAAATGCTATACATGCCAGATCTTCATTGGAAAAAAAGTA-TCAAAA
CACATTACATTCC---------------------TTTACGAAATTACATGAGAAATCTATTT---CTACTATA-------
-TCTGGAGAGTACAAATAAACTTGTGTGCATCATCT---ACATCAGAACAGAGGTAGCGCGTAAGCTAACTCCTAGATAC
AATGGACTTTCCAGTAATAAACTTGGGGCGCTTCTTAAATCCACTAATCTGCTTTTGAAGTTCCTTCTCCAGCTTCGGTT
TGTCGCCGCAACTTGTCAAGACTAGTTCATTCAGGTTTTGGAGGA---CCAGCACAAGGGACAAGCCCTCCTTACTGTCG
TCCAAGTTAACGCATTTCTTCACTTCAAGTTTCTCGAGCACGGCCAATGCACCATCTTTGATTTGTATGCTCTCGATGTT
CTCCATCCCTTCAATGTAAAGCAGTTTGAGCTTCGGAAATGTACCTTCCCCAAAACATAACATCTTCTCGGCGAAGGACT
CCTCCCAGAGTGCAAGAAGAGTAAGGTTGCGCAGCTTCCCCATCACCTCGACGTCAACCTGCTTCAACTGTGTCTGAATT
AGCTTTACCTTGGCCAGATCCTTGAGACGATCCATCCAGCCAGGGAGGTTGCCCAAACGGCCACACAGGCGCAGTGATAG
GAGATGCTTTGGTGGCATTTCCTCTGCTTTCTTTGCTTCCTTCAGAAATTCAAGCGACC---------------------
-------------------------
>chr5D_858
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-----------------------------------------------------------------------CGGCACAAC
AATCGCATATGCTTTCGGGGCCTTATCCATGTCACGGGATCGCAACCAATGGGAACGTGACATGACGCCCGCGTGGGGCC
ACGTCTATCTCCCACCCTTTGGCTGCATCTTCAGTTTCAGAGGCATGCACGCGCTTATGCCAATTGCTGGACTACATCAT
ACAGCAGCA---AGTCAGGGCAGAGCAATGCTCCATTCCATGGCGCCCCTCCA---CGCCGCCGCCGCCACTGCGCAGCA
CGCAGCCGTCGGCGCGGCTCCAAGCAGAGATGCTGCCCCGAAGAAGAACGGCGGCAGCGTTCCAGCCGGACGCGACACCA
GGAGGTTCACTTCATTTCCAACTGTCCTTTTTCTCTGAGAGCCTGCGATCGATACGTATCATCAATAATATCTATCCTTG
ATGCGTTCTTATCGTA----------CGCAGGGCGTTCCTGAGCGGCGTGGTGGTCGCCGCAGCCGGCGCCGGCGTGCTG
CTGGGCCACGTGGACGCGGCACCGGCGGCGTCCAAGAGGCGGGCCCCGCCGCCGCCGTCGGAGGAGAAGGAGAAGAAGGA
CCCGAACCTCAGCGGCGTGCAGGCCAAGGTGTTGGCCAGCAGGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGC
TGCGGGAGAAGGGGAAGAATCCCGCGGACGCGGCCAGCGCTGTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTA
GAGTGAGTTTAT-TTGGGTGCCGCTTTTTTTTCTTTTTGAGAATAATTTGGGTGCCGCTTAATTTGCCAGCTTCTCACTT
GTCGATGACGAGCACATAACAGAGATCGATCCGCCGTATCTTAGCATAAATATTTACTGGAATGGTCATCGTTTTGCTGC
GTGCGATG-AAG--------TACCGGCTTGAATTGATGCG-TACTATCTGTGAATA----ACCTGGCAAGGCCAGCACCA
G----TCAATGATGAACGACGTAGATGAAGTTCACCAAGCAAAAACT---------------------------------
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------------------------TCGCTCTGGAACTTGATCTTCACCAAGCAACTTTGCCGGCTAATTTTTGTAAGAAT
ATGTTCAAACTTATGATACTGAT---------------------------------------------------------
-ACATTACATTCC---------------------TTTACGAAATTACATGAGAAATCTATTACTACTACTATA-------
-TCTCGAGAGTACAAATAAACTTGTGTTCATCATCT---ACATCAGAACAGAGGTAGCGCGTAAGCTAACTCCTAGATAC
AATGGACTTGCCAGTAATAAACTTGGGGCGCTTCTTAAATCCACTAATCTGCTTTTGAAGTTCCTTCTCCAGCTTCGGTT
TGTCGCCGCAACTTGTCAAGACAAGTTCATTCAGGTTTTGGAGGA---CCAGCACAAGGGACAAGCCATCCTTACTGTCG
TCCAAGTTAATGCATTTCTTCACTTCAAGTTTCTCGAGCAGAGGCAATGCACCATCCTTGATTTGTATGCTCTCAATGTT
CTCCATCCCTTCAATGTAAAGCAATTTGAGCTTCGGAAATGTACCTTCCCCAAAACATAACGTCTTCTCGGCGAAGGACT
CCTCCCAGAGTGCAAGAAGAGTAAGATTGCGCAGCTTCCCCATCACCTCGACGTCAACCTGCTTCAACTGTGTCTGAATT
AGCTTTACCTTGGCCAGATCCTTGAGACGATCCATCCAGCCAGGGAGGTTGCCCAAACGGCCACACAGGCGCAGTGATAG
GAGATGCTTTGGTGGCATTTCCTCTGCTTTCTTTGCTTCCTTCAGAAATTCAAGCGACC---------------------
-------------------------
>chr5D_1279
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---------------------------GCAGGGCGTTTCTGCACGGTGTGATGATCGCTGCCGCCA-CGCCGGCGCGCTG
CTGGGCCACGTGGACGCGGCGCCGGCGGCCTCCAAGAGGCGTGCCCCGCTGCCGCCGTCGGAGGAGAAGGAGAAGAAGGA
CCCCAACCTTAGCGGCGTGCA-GCCAAGGTGTTGGCTAGCAGGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGA
TGCGGGAGAAGGGGAAGGAGCCCGCGGACGCCGCCAGCACCGTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTA
GAGTGAGTTTGTTATGGGTGCCGCTT-AATT-------------------------------TTTCCCAACTACTCATTT
CTCAATGAGGAGCACATAACGGAGATCGATCCACCACAGCTTAACGTAAGTATTTACTCAG-TGGTTATCGTTTTGCTGT
GTGATGGACAGACGGAGTACTACCAGCTGGAATTGATGAGCTCTTATCCGTGAATATATAACTTGTCAATGCTAGCACCA
GG---TCAACGATGAAGGTAATTTACGAAACTCAGTAGACGAATGTCTATGAAACAATAGTGTGCTTCACCATCTTTCCT
CTGCGGAAAACAACTAACGAAAAAAGATTCCAAGTCTGGCAGTATCATTCATCAGGAAGCGGAAGAGAAAAATGCTAATC
TCTCTTGATGTTGTAGAAAGAATGTCGCTCTGGAACTTGATTTTCACCAAGCAACTTTGCCGGTGAAATTTCCCAAGAAT
ATGTTCAAACTTATGACATTGAT---------------------------------------------------------
-ATTGCCAAAAATGACCAATCTTCCTTGGAAAAATATACCAAAACACATGACAATCTTTAAAAAAATATTACATGATATA
TTCTAGAGAGTTCAAATAAACTTGTGT-------------------------------------GCTAACTCCTAGATAC
AATGGACTTGCCAGGAATAAACTTGGGGCG---CTTAAGTCCACTCATCTGCTTCAGAAGTTCCTTCTCCAGACATGGTT
TGTTACCACAACTTTTCAAGACAAGTTCGTTCAGTTTTTTCAGGGCGGCCAACACAAGGGACAAGCCCTTATCAGTGTCA
TCCAAGTTAGTGCAGTTATTCACTTCAAGTTTCTCCAGCTCGGGCAAGGCACCTTCCTCGATTTGTATGGTCGTGATGTT
CTCCAGCCCTTCTATGTAAAGCACTTTGAGCATTGGGAATGTACCTTCCCCAAAACATGCAGTCTTCTCGACGAAGGACT
CCTCCCAGAGTGCAAGAAGAGTAAGGTTGCGCAGCTTCCCCAGCACATCAATGTCAACCTGCTTCAATTGTGTCTGAATT
AGCTTTACCTTGGCTAGATCGTGGAGGGAATCCATCCAACCTGGGAGTTTGCCTAAACGGCCACTCAGGCGCAATGATAG
GAGATGCTTTGGTGGCGGTGACTCTGTTTCT-------------------------------------------------
-------------------------
>SNPs
SSSSSSSSSS----------SSS---S------------------------S--------S-S----S-----------S
--------S-S--SSS---S----------------S---S---------S-----S-SSS-S--S--S-----S-----
-----------S-----S----S------S---------S-----S------------S-S------------S------
---S--S-S-S--SS------S--S-S-------------------------S--S-SS-S-------------SS-S--
S-S-----------S-S--------------------------S------S--S--------------------------
---S-------------S-------------------------------S-SSSSSSSS-SS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS---------
---S----------------------------------------S-----------------------------------
---------------------------------S------------SS----------------SS------S-S-----
-----------------------------------------------------SSS-------------S-S--------
-----------------------------------------------S-S------------------------------
----------------------------------------S------S-----S----------S---------------
----S---------S-----------------------------------------------------------------
---------------------------------------------------------S----------------------
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---------------------S----------------------------------------------------------
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-----------------------------S--------------------------------------------------
-S------------------------------------------------------------------------------
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-----------------------------S-------------------S----S---------------S---S---S-
------------------------S--------------S-----------------SS-----S-----SS-S------
S----SS--------------------------------S-----SSS-S------------------------------
------------------------------------SSS------------------S-----S----S-----------
-------S----------------S-----------S-------------------------------------------
------------------S-------------------------------------------------------------
------------------------------------------------------------------------S-------
------------------------------------------------S-------------------------------
-------------------------------------------------------------------------------S
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--------------------------------S-----------------------------------------------
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>forward_801
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-------------------------------------------------------------GGACATTCCTCGGTCGATC
C-------------------------------------------------------------------------------
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>reverse_2298
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---------------------------------------------------------TGCGTAGGCTAGCTCCTAGA---
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