>input_sequence_75400
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGGGCTG
GGGTGGCGGCCAAGCAGCCAGAGTTGTTGCACGGAAGACCGCCTCGCTGGTGGAGCTCACCAGCTCCGTCATGGAGCTTG
GCGTCGTCGGAGGCCCGTTCAGCAACGTCGGCCTTCTCGAGCTCCTGCTGGTCGCCTCGACGCCCGAGGGCTCTGCCCTA
GCTCCACCCGCCAGCGCGGTGGGTCGAGCTCCAGGAGAGGAAGAAGGCGCATGCACGCGCCGGCGTCCGCTGGATCCAAC
TCGACCTCCCCTCACCGTGCAGCTTGGCGGAGGAACTGCGCTAATCTTCTTCTTGATGCACGTGGGCAGCGTGTTCATAC
ATGTTCGTCAGTCCGCCGGTGAGCATATTTGCCTTGCAGTTCCTAAACGCACTATTTTTTGTAGTTTCTATAGGCAATTA
CGGCCGGCTCGCTCGCTCCGCCATACGGCGCGCGCCGTAGTTCGTCACCCATGCTATCTGCCCCGCTGGGAATCTCTTTT
CTTCAGTTCTCCGTTTTTATCTGCTGGCAGCCGGTGGCGCCGAGGCTGTGCTCGACATAATAATGCTGCTGAAGACCGAC
ACAACATGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>chr1B_1_TraesCS1B01G181700
GCGGTCGAGTAGTTTGCCGTCCCGTCGGCCACCGTCGTTGTCTTGCTGTCACCTACCGGCGGTGTCCACTCGCGTCCGTC
GTCATCTATCGACAGCGGCCGCTCGCGC----CGTCATCTTGGCCATCCGTCACTGCCTCCGTCTCCGTCGTCTGCTCTG
CTACGGTCAGCCACCGCTGCCTGCGCCTAGGAGGTATGCCATCGCCGTATGTCTCATTGTCTCTCCGCACGGCGCAGGTA
GTGGAGCATGCAAGGGTTTGCGAGGTAGCACTCCCGGCGTCGCGTCCCACGCCGCCCATGTCATTCCGATCAGGCGGCCG
CAAG------CTCTGAATCCCTGATTCGATCTCCTCTCCAGCGGGCTCCGCGCACCCTTCCGCTGTTGTCCAGCACTGTC
GACG---------------TAAGGAGGGGTTCCAGAGCCCTCTTATCATGGAGGAGGAGCCGAGTATGGACGGCGACGCG
GCCGTGGTTCTCAGGTTAATTGATTTGAGGCCCGTGGTGGAGAAGGTCTGCCAGACTCCTGACGCGGAGAGCTCCGCGTC
GAGCCAGAGGCGACGCGGGAGCTGTGCCGGCGGGACGGCACCACGAGGAGGAAGGGATCGGGCCCGACCAGCTCGCGGGC
GATGTGCTCTACTACGGGTGGACGTACGTGGATGCCCTCATGG---AGAACATCGGCAAGGGCGGGAAGTTGATGGTGCT
GGACGGGCTGAAACTGCGGGC--CGTGCGTGAAGATATGCCCTTCCATGGTGAAGCTGTCGCGGTCCATGGCCGACAGCA
CGGTATTCGCACGCATGAACGGCGACGAGAACGACGTCTGCAATGGAGTCCCTCAAGGATATGGAGGTCGTCGAGGTGCC
CAAGAACAGCACGAACGTGTAGACCGGTATTTCTATCTTCTCCAATTCTTCACTTTCCCCTCTGATTCAATTCACGCCTC
GCC--TGACCGTAGTCACGGACTTACAGGCCACGACTTACACCAGCAGCAAGTCGCCGGGAGCGACAGCAGGATGGGCTG
GGGTGGCGGCCAAGCAGCCAGAGTTGTTGCACGGAAGACCGCCTCGCTGGTGGAGCTCACCAGCTCCGTCATGGAGCTTG
GCGTCGTCGGAGGCCCGTTCAGCAACGTCGGCCTTCTCGAGCTCCTGCTGGTCGCCTCGACGCCCGAGGGCTCTGCCCTA
GCTCCACCCGCCAGCGCGGTGGGTCGAGCTCCAGGAGAGGAAGAAGGCGCATGCACGCGCCGGCGTCCGCTGGATCCAAC
TCGACCTCCCCTCACCGTGCAGCTTGGCGGAGGAACTGCGCTAATCTTCTTCTTGATGCACGTGGGCAGCGTGTTCATAC
ATGTTCGTCAGTCCGCCGGTGAGCATATTTGCCTTGCAGTTCCTAAACGCACTATTTTTTGTAGTTTCTATAGGCAATTA
CGGCCGGCTCGCTCGCTCCGCCATACGGCGCGCGCCGTAGTTCGTCACCCATGCTATCTGCCCCGCTGGGAATCTCTTTT
CTTCAGTTCTCCGTTTTTATCTGCTGGCAGCCGGTGGCGCCGAGGCTGTGCTCGACATAATAATGCTGCTGAAGACCGAC
ACAACATGAAACTGGATGGACACAACATGAATGCGCATGTACCAGCAAATTCAGTTGGTGGATGACAAGTTCTGTTGATA
GCTGTCATAATGCAATCCAGCCGTTTTTGTTTCTGATTTGTTTGCCTTTTGAGTCATTCTAATCCTTGGTTCTGTTTCTT
TTTTTGGACTTCTTTAGAGTTTTTTTACTGCCCACATTAGTGGATATCAAATGGACACACGGTATTACTGGGTACCAGTA
GCTTGTGTGCGTTGTATTTTCCTTTCCGATTTGGCTATTTGGTCAAACACATGTTCTGTCCCCTTGCATGTTTTTAGGGT
AGCCCCCTTGCATTGGCCGGTGATTTGTATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTC
ATGCGTCTGATCCTCTCTGGTAGTTTCTCTTTGGAAGACTCGGGATGCATATCCTAATCTCACTTAACCATGTCCTGCTC
CAACAAATTTGCCCAAGAACAACACTATCGCAGTAGGGAGCCCCAATGAGATGTTATAGACCGTCGATTTAGTATCATGA
CAAAAAAAATTTATCTCTTTTATTCATGTAATGTGCTGTATGTACCTAACCGGATAAATTCATGTTCTGTTTTACTAGGC
ATGATTTATCCGTCAGTGTAATGTTTACATGTCTACATAATGTACTTCA
>chr2D_1
GCGGTCGAGTAATTTGCCATCCCGTCGGCCACAGTCATTGTCTTGCTGTCACCTACCGGCGGTGTCTACTCGCGTCCGTC
GTCATCTATCAACGGCGGCCACTCGCGCACATCGTCATCTTGGCCGTCAGTCACCGCCTCCGTCTACGTCGTGTGCTCTG
CTGCGGTCAGCCACCGCTGCCTGCGCCTAGGAGGTTTGGCACCGCCATA--------TGTCTCTCGGCACGGCGCATGCA
GTGGAGCATGCAAGGGTTCGCGAGGTAGCACTCCCTGCTTCGCGTCCCACGCAGTCCATGTCATTCCGATCTGGCAGCCG
CAACCGCAAACTCTGAATCTCTGATTCGTTCTCCTCTCCAGCGGGCTCCGCACACCCTTCCGCTGTTGTCCAGCACTGTC
GCAGGAGATGCTGCAAGCATAAGGAGGCATTCCAGAGCCCTCTGATCATGGAGGAGGAGCCGAGTATGGACGGCGACGCG
GCCGCGGCGCTCAGGTTAACTGATTTGAGGCCCGTGGTGGAGAAGGTCTGCCAGACTTGCGAAACGGAGAGGTCCGCGCC
GAGCTAGAGGCGGCGCGGGAGCTGTGCCGGCAGGACGGCACCACGAGGAGGAAGGGATCGGGCTCGACAAGCTCGCCGGC
GATGTGCTGTAATACGGGTGGCCGTACGTGGATGCCCTCATGGCGGAGAACATGGGTAAGGCCGGGGAGCTGCTGGTGCT
AGACGGGCTCAAGCACTGCGTGACGTGCGTGAAGGTATACCCTTCCATGGTGAAGCTGACGCGGTCCATGGCCGACAGTG
CGGTATTCGCGTGCATGAA-------------------------------CCTCGAGGATATGGAGGTCGTCGAGGTGCC
CAAGAACAACACGAACGTGTAGGCCGGTATTTCTATCTTCCCCAATTCTTCACTTTCCCCTCGGATTCAATTCACGCCTC
GCCCGTGACCGTAGTCACAGCCTCACAGGCCACGACTTACACCAGCAGTGAGTCGCCAGGAGCGACAGCGGGATGGGCCC
GTGTGGCGGCCAAGCAGCCAGAGTTGTCGCACGGAAGACCGCCTTGCCG--------CACCAGCTCCGCCATGGAGCTTG
GCGGCGTCGGAGGCCCGTTCA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>SNPs
-----------S------S-------------S---S-----------------------------S-------------
----------S--S------S------------------------S--S-----S----------S------S-------
--S--------------------------------S--S--S----S--SSSSSSSS--------S----------S-S-
------------------S----------------S--S-------------S-S----------------S---S----
---S---------------S--------S----------------------S----------------------------
-SS------------------------SS--------------S------------------------------------
----S--SS----------S-------------------------------------SSS--SS-------S------S-
----S-------S------------------S-------------------------------S----S-------S---
--------S--S---------S-------------------------------S--S----S----S--S--S-------
S--------S--S-SSS-S-S-------------S---S-------------------S-------------------SS
----------SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------------------------
--------S-------------S-----------------S---------------------S-----------------
------------------S-S--S------------------------SS-------S-----------S--------SS
-S-------------------------S----------------S--S-SSSSSSSS-----------S-----------
---S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AACGACGTCTGCAATGGAGT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_1928
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTGCATTGGCCGGTGATTTG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
