>input_sequence_75398
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--------------------------------------------------------------------------ATGTCC
ATCAGATCTCTCATCGTCGCATCCAGGTCCAGATATGCCCTTGCCGCTTCCACCATCTCTCAGGTTAGGTGCCCCTCCTC
CGCGTTTCCT--------CGAGCTCTTTCTTTACAACAGAAGCAGAACACTGATTCACAATATCTTTGAACTGATCTGAT
GTGTTTTACTGCACGTT-GTCTGATTGATCAGGCAACTTCCAGGGCGCACCAGCACGCCT---GCGTGCCTCCTCTGCTC
TCGGGGCTTGGACCACTCGTGCGCGCCTTTAGGTAC---------------------------AGTCTGTGATGCCAGCC
TGCCTCTTGCTTGTGGAAAGAGCTGAATGAATTGTTCGTGCTATATGTGTGCAGCTCAAGCGCTGCAGTAGCAGATGTCA
ATTCAGGTGTCCGTGTCATGGAGGGGCAGGTGTGTTACT-CCCCTCCCTAAATCTATCATGTTCTGCTAATTGTGTGTGA
GTGTACGATCCATTTCTAAGTTTGTAGTAGCTAGAAGAATATGCGCACTTCGCCTTGCTGGCTAGTGTGGCCCTGGCTGA
TGTGCTGTTTAGAACCACTTCAAAATGTTGCTTTAATACTATATGTGTATAA----------------------------
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>chr5D_1_TraesCS5D01G246500
GTCTACCGGCGCGCCTCCTCGCCGCCGTAGAGGTACTGCTCCCTTCCCCCATTCCACTATCTCTAACCCTCTCTCCCTCT
CACTCTGCGTGAATCGCCTGTACAGAAGGATGCACTGCTCTCCCGTCCCCTCCCCCTCATCCTTCTCCCGTCGCTCCTCC
CCCTTCTTCTCCTCCTCCCCACGCTCCTCCTCCGTTGCCCGACATCGCCGCCCACTCTCCTCATCCCACGTTTCTCTGCC
CTTGTACAACTGTGTTATTGTGGCTAGGATGCATTTTCTGGACCATGGTCTGTCTGTGCATTGCCGACCTGATTTGGGAC
TTATTTTGATCT--AAGTTGCTGCTGCCGACTACCTTAG------------ATGCAGTGCCAGTGTGATGCAACTGTTTG
GCCTATGATTTCTTTGTAGAAATGTGCTTATATATGATTCCATGCTAAAACTGATCGCAGCTGA--------TGTTTATG
TATGATGATACCATGTCTTTGTTGCTTAGTTTGTCAGAGGTGCAAGTATGATTATCTTAAATGATGGCGTTTTTCTGTTG
GGCTT------GGATCATTTATGTGAATGTAATCATGTATAAACAGTGGAGGCAACAATCAATGTCTAGA-TTTTTTTAG
ATGGACGGCATCAGCAAGAAAACGGCAAATGCTAATACTGCGAGCTGTAGGCTTGG-----TTGCTGTTTCGTGTTCATA
CATGGCCATGATAGTTACAAGGGCTAGAATTAGGAACTATCGTGTTCTGATCACCTACGGACCTATGCATGAGAGCGACA
TGGCTAGGATGTCAAATTTACGTTTTATCTACTACTGCAATGGCACAAATTGCCGCAACCAGCTTAGGATGAGTAGGGCG
CCATTTTTTAACTTGTGTACATTGTTCCGTGATAGGAAATTGTTGAAATACCCATTCCTATCCACGAGGTCAAATGGGAC
TTCTTATCACTTTCTTCCCCTCTTTGTTTGTGCAGGCCACTGCTGCCGCTGGGAAACCTTAATCGCCAGCAGCCATGTCC
ATCAGATCTCTCATCGTCGCATCCAGGTCCAGATATGCCCTTGCCGCTTCCACCATCTCTCAGGTTAGGTGCCCCTCCTC
CGCGTTTCCT--------CGAGCTCTTTCTTTACAACAGAAGCAGAACACTGATTCACAATATCTTTGAACTGATCTGAT
GTGTTTTACTGCACGTT-GTCTGATTGATCAGGCAACTTCCAGGGCGCACCAGCACGCCT---GCGTGCCTCCTCTGCTC
TCGGGGCTTGGACCACTCGTGCGCGCCTTTAGGTAC---------------------------AGTCTGTGATGCCAGCC
TGCCTCTTGCTTGTGGAAAGAGCTGAATGAATTGTTCGTGCTATATGTGTGCAGCTCAAGCGCTGCAGTAGCAGATGTCA
ATTCAGGTGTCCGTGTCATGGAGGGGCAGGTGTGTTACT-CCCCTCCCTAAATCTATCATGTTCTGCTAATTGTGTGTGA
GTGTACGATCCATTTCTAAGTTTGTAGTAGCTAGAAGAATATGCGCACTTCGCCTTGCTGGCTAGTGTGGCCCTGGCTGA
TGTGCTGTTTAGAACCACTTCAAAATGTTGCTTTAATACTATATGTGTATAATGAGCTGATATCCATATATGTATAGTTT
AGCAGACAGAAAAAAAAGCACCTCTTTTTCTTGGTCCGAATAAAT-----GCAAGTACATTAGATAATCAAACCAGAATG
CTATTACCGAGGTGGGATGGGTCTATTCTATCTAGGCGATACATTGCATTAGTTAAATTGAACCACACACCATAATAT--
------ATTGTACTTTGTGGACGTTATATGAGCCTTATAGGTTTACGGCGTTGCCCTACTTTCCCTGAATATATAATGAA
CAATCCACGAATACATGCATTATGATTTTGGTAGACATTATCCGCCTTGTGCTTCACCAAAAACACCATAGTTAAACCCT
TGTAACGTAAACGCTGGGGAGGTTTGACACACACTTTATAAGCCACCCTCCTTCACTTAGGCAAGGGTTCGCACACACTG
TAATCTGACATCCATACGCAGAGAAAAAGCTCCTGGAGCACAGGACGTAGGGTCTTTACCTCCGCCGCGAGGGGCCTGAA
CCTGCAAAAGCTTCTGTGTCACACTTGCACCTAGCGTGATCCAGCTACTACCCTGCCCCTCTCTCGTACTGTCAGGACTT
CCCTCACGACACTCTCTGACTCCCCAGGTCGCCGCCACCGTTGCGTCCTCTCCACCTGGCGCCAGCCGATGCACGCCCTC
GCATGTGCTGCATCCCTCCTGCGTCGAGCCATGGCCTGCCTGCCCCAGCTCGGCGCCATCGGCTGCGACACCCCGCTCCT
CGCCAAGGTCTTGTTCTTGTACCCCATCCTCCCCATGTCTGTCACGTTGGTGCTCCGTGAGGCTAGTGCGACGTGCTCCA
CCAGTTCGAATACGTGAGAGTTAGACCGCATTTGGCTCATTGGATTGGTAGGGTTTTACAGGGGTTTTAGAAACTATGGA
TTTGGGCGTCTCTGTTGGGATGGTACCAAGATCCCATCGATCAGTCAGGATTTGTGGAGCAATTGACACTGATTTTTGGG
CGGTTTGGGTCACATTCCTGATATA
>chr5B_1
GTCTACCGGCGCGCCTCCTCGCCGCCGTAGAGGTACTGCTCCCTTCCCCCATTCCCCTCTCGCTAACCCTCTCTCCCTCT
CACT----------------------------------------------------------------------------
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---------CTGCGTTATTGTGGCTAGGATGCATTTTCTGGACCATGGTCTGTCTGTGCATTTCCGACCTGATTTGGGAC
TTATTTTGATCTCTAAGTTACTGCTGCTGACTACCTTAGTTAGAAATGATGATGCAGTGCCAGTGTGATGCATCTGGTTG
GCCTATGATTTCCTTCTAGAAATGTGCTTATATATAATTCCACGCTTAAACTGATTGCAGTTGATGTTTAATTGTTTATG
TATGATGATGCCATGTCTTTGTTGCTTAGTTTGTCAGAGGTGCAAGTATGTTTATCTTAAATGATGGCGTTTTGTTGTTG
GTCTTGGCTCAGGCTCATTTATGTGAATGTATCATGTATAAAACAGCAGAGGCAACAATCTATGTCTAGA-TCTATTTAG
ATGGACGGCATCAGCAAGAAAACGGCAAATGCTAATACTGCAAGCTGTAGGTTTGG-----TTGCTGTTTCGTGTTCATA
CATGGCCATGATAGTTACAAGGGCTAGAATTAGGAACTATTGTGTTCTGATCACCTACGGAC-GATGCATGAGAGCGACA
TGGCCAGGATATCAAATTTACGTTTTATCTACTACTACAATGGCACAAATTGCTGCAACCAGCTTAGGAT----------
-----------CTTGTGTACATTGTTCCGTGATAGGAAATTGTTGAAATACCCATTCCTATCCACGAGGTCT-ATGGGAC
TTCTTATCACTTTCTTCCCCTCTTTGTTTGTGCAGGCCGCTGCCGCCGCTGGGAAAGCTTAATCGCCAGCAGCCATGTCC
ATCCGATCTCTCATCTCCGCATCCAGGTCCAGATATGCCCTCGCCGCTTCCACCATCTCTCAAGTTAGGTGCCCCTCCTC
CGCGTTTCCACGACTCCACGAGCTCTTTCTTTACAACAGAAGCAGAACGCTGATTCACTATAT-TTTGAACTGATCTGAT
GTGTTTTACTGCACATT-GTCTGATTGATCAGGCAACTTCCAGGACGCACCAGCACGCCT---GCGTGCCTCCTCTGCTC
TCGGGGCTTGGACCACTCGCATGCGCCTTTAGGTAC---------------------------AGTCTGTGATGCCGGCC
TGCCTCTTGCTTGTGGAAAGAGCTGAATGAATTGTTGGTGCTATATGTGTGCAGCTCAAGCGCTGCAGTAGCAGATGTCA
ATTCAGGGGTCCGTGTCATGGAAGGGCAGGTGTGTTACT-CCCCTCCCTAAATCTATCATGTTCTGCTAATTGTGTGTGA
GTGTACGATCCATTTCTAAGTTTGTAGTAGCTAGAAGAATATGCGCACTTCGCCGTGCTGGCTAGTGGGCCCCTGGCTGA
TGTGCTGTTTAGAACCACTTCAAAATGTTGCTTTAATACTATATGTGTATAATGAGCTGATATCCATATATGTATAGTTT
AGCAGACAGAAAAAATAACACCTCTTTTTCTTGGTCCGAGTAAAT-----GCAAGTGCATTAGATAATCAAACCAGAATG
CTATTACCGAGGTGGGATGGGTCTATTCTATCTAGGCGATACATTGCATTGGTTAAATTGAACCACACACCATAATATCT
TAAGTTATTGTACTTTGTGGACGTTATATGAGCCTTATAGGTTTACGGCGTTGCCCTACTTTCCCTGAATATATAATGAA
CAATCCACGAATACATGCATTATGATTTTGGTAGACATTATCCGCCTTGTGCTTCACCAAAAACACCATAGTTAAACCCT
TGTAACGTAAAAGCTGGGGAGGTTTGACACACACTTTATAAGCCACCCTCCTTCACTTAGGCAAGGGTTCGCAAACACTG
TAATCTGACATCCATACGCAGAGAAAAAGCTCCTGGAGCACAGGACGTAGGGTCTTTACCTCCGCCGCGAGGGGCCTGAA
CCTGCAAAAGCTTCTGTGTCACACTTGCACCTAGCGTGATCCAGCTACTTCCCTACCCCTCTCTCGTACTGTCAGGACTT
CCCTCACGACACTCTCTGACTCCCCAGGTCGCCGCCACCGTTGCGTCCTCTCCACCTGGCGCCAGCCGATGCACGCCCTT
GCATGTGCCGCATCCCTCCTGCGTCGAGCCATGGCCTCCCTGCCCCAGCTCGGCGCCATCGGCTGCGACACCCCGCTCCT
CGCCAAGTTCTTGTTCTTGCACCCCGTCCTCCCCATGTCTGTCACGTTGGTGCTCCGTGAGGCTAGTGCGACGTGCTCCA
CCAGTTCGAATACGTGAGAGTTAGACCGCATTTGGCTCATTGGATGGGTAGGG-TTTACAGGGGTTTTAGAAACTATGGA
TTTGGGCATCTCTGTTGGGATGGTACCAAGATCCCATCGATCAGTCAGGATTTGTGGAGCAATTGACACTGATTTTTGGG
CGGTTTGGGTCACATTCCTGATATA
>chr5A_193
CGTC----------------------------------------------------------------------------
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------------------------------------GCCCGACATTTCCGCCCACTCTCCTCATCCCACGTTTCTTTGCT
CTTCTACAACTGTGTTATTCTGGCTAGGATGCATTTTCTGGACCATGGTCTGTC--TGCATTGCCGACCTGATTTGGGAC
TTATTTTGATCTCTAAGTTGCTGCTGCTGACTACCTTAGTTAGAAATGATGATGCAGTGCCAGCGTGATGCAACTGTTTG
GGCTATGGTTTCTTTTTAGATATGTGCTTATATATGATTCCATGCTAAA-CTGATTGCAGTTGA--------TGTTTATG
TATGATGATGCCATGTCTTTGTTGCTTAGTTTGTCAGAGGTGCAAGTATGATTATCTTAAATGATGGCGTTTTTCTGTTT
TGCTT------GGCTCATTTATGTGAACGTGATCATGTATAAACAGTGGAGGCAACAATCAACGTCTAGATTTTTTTTAG
ATGGACGGCATCAGCAAGAAAACGGCAAATGCTAATACTGCGAGCTGTAGGCTTGGCTTGGTTGCTGTTTCGTGTTCATA
CATGGCCATGATAGTTACAAGGG----------------------------CACCTACGGACCGATGCATGAGAGCGACA
TGGCTAGGATGTCAAATTTACGTTTTATCTACTACTACAATGGCACAAATTGCCGCAACCAGCTTAATATGAGCAGGGCG
CCACTTTTTAACTTGTGTACATTGTTCCGTGATAGGAAATTGTTGGAATACCCATTCCTATCCAGGAGGTCT-ATGGGAC
TTATTATCACTTTCTTCCCCTCTTTGTTTGTGCAGGCCGCTGCTGCCGCTGGGAAAGCTTAATCACCAGCAGCCATGTCC
ATCAGATCTCTCATCGCCGCATCCAGGTCCAGACATGCCCTCGCCGCTGCCACCATCTCTCAGGTTAGGTGCCCCTCCCC
CGCGCTTCCT--------CGAGCTCTTTCTTTACAACAGAAGCAGAACACTGATTCACAATATCTTTGAACTGATCTGAT
GTGTTTTACTGCACCTT-GTCTGATTGATCAGGCAACTTCCAGGGCGCACCAGCACGCCT---GCGTGCCTCCTCTGCTC
TCGGGGCTTGGACCACTCGCGCGCGCCTTTAGGTAT---------------------------AGTCTGTGATGCCAGCC
TGCCTCTTGCTTGTGGAAAGAGCTGAATGAATTGTTCATGCTATATGTGTGCAGCTCAAGCGCTGCAGTAGCAGATGTCA
ATTCAGGTGTCCGTGTTATGGAAGGGCAGGTGTGTTACT-CCCCTCCCTAAATCTACCATGTTCTGCTAATTGTGTGTGA
GCGTACAATCCATTTCTAAGTTTGTAGTAGCTAGAAGAATATGCGCACTTCGCCGTGCTGGCTAGTGTGGCCCTGGCTGA
TGTGCTGTTTAGAACCACTTCAAAATGTTGCTTTAATACTATATCTGTATAATGAGTTGATATCCATATATGTATAGTTT
AGCAGACAGAAAAAATAACACCTCTTTTTCTTGGTCCGAGTAAATGCAATGCAAGTACATTAGAGAATCAAACCAGAATG
CTATTACCGAGGTGGGATGGGTCTATTCTATCTAGGCGATACATTGCATTAGTTAAATTGAACCACACACCATAATATCT
TAAGTTATTGTACTTTGTGGACGTTATATGAGCCTTATAGGTTTACGGTGTTGCCCTACTTTCTCTGTATATATAATGAA
CAATCCACGAATACATGCATTATGATTTTGGTAGACATTATCCGCCTTGTGCTTCACCAAAAACACCATAGTTAAACCCT
TGTAACGTAAAAGATGGGGAGGTTTGACACACACTTTATAAGCCACCCTCCTTCACTTAGGCAAGGGTTTGCACACACTG
TAATCTGACATCCATACGCAGAGAAAAAGCTCCCGGAGCACAGGACTTAGGGTCTTTACCTCCGCCGCGAGGGGCCTGAA
CCTGCAAAAGCTTCTGTGTCACACTTGCACCTAGTGTGATCCTGCTACTTCCCTACCCCTCTCTCGTACTGTCAGGACTT
CCCTCACGACACTCTCTGACTCCCCAGGTCGCCGCCACCGTTGCGTCCTCTCCACCTGGCGCCAGCCGATGCACGCCCTC
GCACGTGCCGCATCCCTCCTGCGTCGAGCCATGGCTTGCCTGCCCCAGCTCGGCGCCATCGGCTGCGGCACCCCGCTCCT
CGCCAAGGTCTTGTTCTTGCACCCCATCCTCCCCATGTCTGTCACGTTGGTGCTCCGTGAGGCTAGAGCGACGTGCTCCG
CCAGTTTGAATACGTGAGAGTTAGACCGCATTTGGCTCATTGGATGGGTAGGG-TTTACGGGGATTTTAGAAACTATGGA
TTTGGGCGTCTCTGTTGGGATGGTACCAAGATCCCATCGATCAGTCAGGATTTGTGGAGCAGTTGACACTGATTTTTGGG
CGGTTTGGGTCACATTCCTGATATA
>chr7D_405
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------------------GAAATGTGCATATATATGGTTCCATGCTAAAATTGGTTGCAAATGA--------TGTTTACA
TATGATGATGCCATGTCTTTGTTGACTAGTTTGGTAGAGGTGCAAGTATGTTTATCTTAGATGATGGCGTTTC-CTGTTG
GGCTT------GGCTCGTTTGCGTGAATGCAATCATGTATCAACAGTAGAAGCAATAT-----------A-TTTATTATG
ATGGGTGGCATCGGCAAGAGAATGGCAACTGCTAATACTGCGAGCAGCAGAGTTGG-----TTCCTGTTCCGGGTTCCTA
CACGGCCATGATACTTACAAGGGTTGGAATTAGGAACAGTATTGAGCAGCAGT---------CGATGCTCAAGAGAGACA
TGGTTAGGCTGTCAAAATTATGTTTTATCTACCACTCGAATGAGACCGATTGCTGCAGCCAGCTTATGATGAGTAGGGCC
CCATTTCTTAACTTTTGTATCTTGTTCCGTGATAGAGAGTTGTTGCAATACCCATTCCAACCCGCAAGGTCC-ACGCGAG
TCCTCATCACTTTCTCCT---CTCTGTTTCAACAGGTCGC---CGCTGCTGGGAGAGCTTAAGCGCCAGCAGCCATGTCC
ATCAGATCTCTCATCGCCGCGGCCAGGTCCAGCCATGCCCTCGCCACTGCTACCATCTCCCAGGTCAGGCGCCCCTCCCC
CGCATTTCTT--------GGACCTCTTTCTTTACAACCCAAGGAGGACAACGATTCACAACATCTTTGAACTGATCTGAT
GTGTTTTACTGC----------GATTGATCAGGCGGCCTCCAGGGCGCACCAGCACGCCGGT---GTGCCTCCGCTGCTC
TCGAGGCTTGCACCACTAGCCCGCGCCTTCAGGTATCTC--TTGTTACTATCTCA--------AGCCTTTGATGCCAGCC
TGCCTCTTGCTTGTGGAAAGACCTGAATGAGTTGTTCGTGCTATATGTGTGCAGCTCAAGCCCTGCAGCAGCGGATGTCG
CTTCAGATGTCCCTGTCATGGAAGTGCAGGTGTGTTACT-CCCCTCCCTAAATCAATCATGTTCTGCTAATTGTGTGTGA
GTGTAGGATCCATTTGTAAACGAGTAGCTGCTAGCAGAATATGCGCACCTTGCCTGATGTTCT------GCCCTGACTGA
TGTGTTGTTCAGAACCATTTCAAATTGTTGCTTTAATGCTATATGTGTATATTTAGCTGATGTCAAAATGGAGATAGTTT
AGCAGAGAGAGAAAATAACACCTTTTTTTCTTTGTACGGATAAAT-----GTAAGTACATTAGATAGTCAAAGCCA----
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>chr4A_542
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---TT------GGCTCATTTGCGCGAATGCAATCATATATAAATAGCAGAAGCAATATATT-----TATA-TTTATGTAG
ATGGGTGGCATCGGCAAGAAAATGGCAGCTGCTAATAGTGTGAGCTGCAGGGCTAG-----TCGCTGTTCCGGGTTCCTA
CACGGCCGTGATACTTACAAGGGTTGGAATTAGGAACAGTAGTGAGCAGCAAT---------CGATGCTGGAGAGCGACA
TAGTTAGGCTTTCAAAGTTACGTTTTATCTACCACTCGAATGAGACCGATTGCCGCAACCAGCTTAGGATGAGTAGGGCC
CCATTTCTTAACTTTTGTATCTTGTTCTGTGATAGAAAGTTGTTGCAATACCCGTTCCAACCCACAAGGTCC-ATGGGAC
TCCTCATCACTTTCTCCTCCGCTCTGTTTCCACAGGTCGCAGCCACTGCCAGGAAAGATTAAGTGCCAGCAGCCATGTCC
ATCAGATCTCTCATCGCCGCGTCCAGGTCCGGCCATGCCCTCGCCGCTGCCACCATTTCTCAGGTCAGGTGCCCCTCCCC
TGTGTTTCTT--------CGAGCTCTTTCTTCATAACTGAAGGAGGACACTGAGGCACAACATCGTTGAACTGGTCTGAT
GTGTTCTACTGCACGATGGTCTGATTTATCAGGCAGCCTCCAGAGCGCACCAGCACGCCGCCGGCGTGCCTCCTCTGCTC
CCCAGGCTTGGACCACTCGCCCGCGCCTTCAGGTACGTATATTGCTACTATCTCAAGTTCGTGAGTTCGTGATGCCGGCC
TGTCTCCTGCTTGTGGACTGT--TGAGTGAATTGTTTGTGCTATCTGCGTGCAGCTCAAGCCCTGAAACAGCAGATGTCG
ATTCAGGTGTCCCTGTCATGGAAGTGCAGGTGTGTTACACCCCCTCCCTAAATCTATCGTGTTCTGCTAATTGTGTGTGA
GTGTAGGATCCATTTGTGTATGAGTAGCAGG--------TATGCACACTTTGCCGCATCGGCGAGTGAGGCCCTGATTGA
TGT-TTGTTTAGAACCACTTCTAAATGTTGTGTATAATTCA---------------TTGATATTCATATGGAGATAGTTT
AGCAGAGAGAAAAAAAATAAT-TTGTTTTCTTGGTCAGGATAAAT-----GCAAGTAGATTAGATAATGAAA--------
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>SNPs
-------------------------------------------------------S--S--S------------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS----------------------------S---S
---S----------------------------------------------------------------------------
---------------------------S----------------------------------------------------
---------------S---------------------------------------S----S-------------------
---------S----------------------------------------------------------------------
-------------S------------------------------------------------------------------
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----------------------------------------S----------------------S----------------
------------------------------------S-------------------------------------------
-----------------------------------------------------------------------SS-------
--------------------------------------S-----------------S-----------------------
----------------S------------------------S--------------------------------------
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-------------------S------------------------------------------------------------
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----------------------S---------------------------------------------------------
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-----------------S--------------------------------------------------------------
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-----------S--------------------------------------------------------------------
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-------------------------------------------------S----S-------------------------
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--------S-----------------------------------------------------------------------
-------------------S------------------------------------------------------------
---------------------------------------------S-------S--------------------------
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>forward_240
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------------------------------------------------------------TCATCCCACGTTTCTCTGCC
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>reverse_2215
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------------------------------------------------------GCCCCTCTCTCGTACTGTCA------
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