>input_sequence_75390
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-------------------------------------------------------------ATGGAAAAGCTGCTCACCG
TAGTGTGTGTTTCAAGCCTTCTTCTAGCCACTCTCGCGGACGACGCCTCCTCCAGATCTTCTCTTCAGCACCCCTCCCCG
GACAGTCTACAAGGTCGTGTTCTAGGTCGCAGAGGCAGAGAGGAACCGGCACACCACCACCATTACCGGCGTGAAGGCGA
CCACGAGGAGCAGCATGAGGTCAGTTCATTTTGCCCCCACCAAGAAATTCAGAGACCCCAAAACAGAGTTTCCCGTGTAA
TTTGAGCAGAGACTCTGCAGCTGTTATTCAGCTGTGTACCTGTCTCTGAACGAAGCACGCACCATTTTCTGCTCAGAAGA
AATTTGTTTTGTTCAGAAGAAAATGTATG--GCACCATCAGAGTTTT--TTGACGACGAA--GCACAAGTGCAGGTTGTG
CCTATGGGAGTGGAGAGTGTTGAAGAGAGGAGGAAGGCGGGCTGGAGGAACGAGGACGAGGAGGCGGTTGCGACGGAAGG
GCTGATCTCCAGCGCGGACTACAGCGGCGTGGCCATGCACGGCCACAGCTCCCCGCCGGCGCACAAAAAGCACCCCAGGC
CATAG---------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G500500
CGAGCTAAGCAAGTAGCTCGCGCCTTGGCTCGAATCCTCTCGAACTCAAATAATAACTAGTCGAGCCAACCTTTAGTTTA
AGATCGTTTATAGACCGAGTTAAACGAGACAATTTCACGAGTACTCATGTAACTCGTTAGACTCGGTACAAAAGATCAGC
CACTCAACTCCCTGCGTCCTAGGCGCACAACACAAGGCTCAACCGCCCGGGAGACTCATACATCGCACGCGACTATTTCT
CTCCTTCCATCCCCAGTGAAGTTATAGATGACCGATTCCCCTCTTGTCTTCTCTGTTTATTTTACCTGTGAAACGCGATG
GCGGCAGTACCGTGTGTATGCCGCAACCCCACCTCTTCGGCCAGCGGCCTGCGCTTCTGAGGTGCGTTCGTCGGACACTC
CCCGGCAACACTGCTCATCTCCTCCTTATCTTCCTTTAGTTCCTCTACTACTGATCTATGCTTGCATTCTTCTGTCTGAC
TTGTTGATGTTACCGAAGCTCGTACATACTTACAATTGTTTATGAACATTGTACATGCTCATTATGTACATGTTACATTC
CCAAGTAATCGTTTTTATTATATTTGTAAGATTTTTTGTTCGTATCTTTAACAAGCTTATAACAAGCTAAACGAGCCAGC
TTGTGAGTTATACAAGTCGAGCCAATCTTGAATTTGACCTCGTTATAGTAACGAGTCGAGTCGAGCCGAGCTACCTCGTT
AATGAAACGAGCCGGCTTGACTCGGCTCAAATTCCAGCCCTAATCCTTAGGGACAAGGAATACTTTTTGACTGTTATCGA
CAATGTCATGCCGACTCCAAGCCGATTATGACA------TTTT-TTCTTCAAATGGGGCCTAGTTTGA-AAATATGCCTA
AGCCGAGGTGCCATTATGCATTTTGTGCAACCCTCGCCGATGTGTGTCTG-GT-AAAGACACCGATGAGAGAGCGTTCTA
CAAGAGCTTCCTC-----------CTCTCCATTATTGTCAGCTGCCACAGGCACCACCACCATGGAAAAGCTGCTCACCG
TAGTGTGTGTTTCAAGCCTTCTTCTAGCCACTCTCGCGGACGACGCCTCCTCCAGATCTTCTCTTCAGCACCCCTCCCCG
GACAGTCTACAAGGTCGTGTTCTAGGTCGCAGAGGCAGAGAGGAACCGGCACACCACCACCATTACCGGCGTGAAGGCGA
CCACGAGGAGCAGCATGAGGTCAGTTCATTTTGCCCCCACCAAGAAATTCAGAGACCCCAAAACAGAGTTTCCCGTGTAA
TTTGAGCAGAGACTCTGCAGCTGTTATTCAGCTGTGTACCTGTCTCTGAACGAAGCACGCACCATTTTCTGCTCAGAAGA
AATTTGTTTTGTTCAGAAGAAAATGTATG--GCACCATCAGAGTTTT--TTGACGACGAA--GCACAAGTGCAGGTTGTG
CCTATGGGAGTGGAGAGTGTTGAAGAGAGGAGGAAGGCGGGCTGGAGGAACGAGGACGAGGAGGCGGTTGCGACGGAAGG
GCTGATCTCCAGCGCGGACTACAGCGGCGTGGCCATGCACGGCCACAGCTCCCCGCCGGCGCACAAAAAGCACCCCAGGC
CATAGGCCTTCCGCCTCCGGATATTATTCAGTTCGTGTGTAATCTTGTCCGGTTCAGTTTCCAGTTCTTT----GTGCCT
TTAGCAAAGTA----AGTAGGCCGGTTTCACGGAATTGGGGTATCGGGAGCTCCTCGCCGTCTCTGTAAAAGATGCCAAG
TCCACGATTTTATATGGATCTTCCTTAAAAAGAAAAATCGAGATACATAGTTGT----------GCCTTTGTTGCTTGAG
GCCGGGATGGGTGTGTACTCATTGTGCTTGTATCCCCTTGATGCTTCATTTCAAATTAATAAAATACACCCTTTATCGGA
AAATTACTTGTGCCTTTGT------------TGATTC-AGTAGCTGTTTGTTGGGGATTGGCTCCGGGCGGCACT-----
-------CGATGATCCGTGGGGTGCACCGTGCACCCAGCAGGTTCAACACCACCAAACGCAGAACGCACGGCACAGGCAC
TCCACATACAT-----------------AGGGCAAAGCACGGTGAAGTGTGCACGGGTGGGAAACCTGGGA---------
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-----------------------------------------------------------------------GCCATGGCA
GCCAAAATCAGTAGGCG--TTTCAGATAGCAGCTTCTTCACTACTTTTCTATCAAGTTCAGTATCTGCAGCAGGGCACGC
TCGCTGTGCGCTCCGTGCGTTCAGGGAGCAGG-----------------CCAGCTGCACGACTTCGTCCGTGGGATGGCA
CAGGCATTGTGGAGTTAGCTGCAAGC------------------------------------------------------
--------------------------------TATGCAGCA-----GTACGGTACGATCTGTTTTACTGAATAAATAAAA
GGAAAATAAGAGCATAAAAGCAGAGCAGAACTTTGCGCTGCATGATTCCTTGTCTCGTTTCTTCAGAGCTGAGAGAC---
-----AGAGAGAAAGAGAGGGCCGTCCGGCAACGG-----------AGCGACCATCTGCAAACGGACCGCCCTCCTCCAC
AATGGTCATAGCACTATAGCAGCGTCTGGCAGCCTGGGGA----CACTGAGATCTACAAACGGCCCAAGTTTTCCTTTCG
AGC-AACAGGCAAGAGCTCTGTCTTTTCATTAAGAAGAAGATAAGCTAACTTGGTCAGAGCCCATTGATTTTTGTATTG
>chr2B_728
CGAGCCA-------------------------------------------------------------------------
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-------------GGCTTGACTTGGCTCAAATTCCAGCCCTAATCCTTAGGGGCAAGGAAGACTTTTTGACTGCCATCGA
CAATGTCATGCTGACTCCAAGCCGATTACGTGGTGACATTTTCGTTCTTCAAATGGGGCCTAATTTA-CAAATATGCCTA
AGCCTAGGCGCCAGTATGCATTTTGCATC-----------ATGTGTACCTTAGCAAAGACACGGATGAGAGAGCGTTCTA
CAAGAGCTTCCTCTTCTCGTCGCTCTCTCCATTATTGTCATCTGCCACAGGCACCACC---ATGGAAAAGCTGCTCGCCG
TAGTGTGTGTTTCAAGCCTTCTTCTAGCCGCTCTTGCGGACGATGCCTCCTCCCGATCTTCTCTTCAGTACCCCTCCCTG
GACAGTCTACAAGGTCGTGTTCTAGGTCGCAAAGGCCGAGAAGAGCCAGCACACCACCA---TTACCGGCGTGAAGGCGA
GCACGAGCAGCATCATGAGGTCAGTTCACATGTCTCCCCCCAAAAGCTTCAGAAACGCAAAAACAGGGTTTCTCTTGTGC
TTTGCGCAGAGACTCTGCGGCTGTTATTCAGCTGTGTGCCTGTCTCTGCACGAAGCACACACCATTTTCTGCTCAGAAGA
AAATTGTTTTGCTCAGAGGAAAATACATG--GCGATGAG---------------------GTGCACATGTGCAGGTTGTA
CCTATGGGAGTGGAGAGTGCTGAAGAGAGGAAGAAGGCAGGCTGGAGGAACGAGGACGAGGACGCGGTTGCGACGGAAGG
GTTGATCTCCAGCGCGGACTACAGCGGCGTGGCCATGCACGGCCACAGCTCCCTGCCGGCGCACAAAAAGCACCCCAAAC
CATAGGATAGGCCTCCGGCTC-----TTCATTTCGTGTGTAATCTTGTCCAGTTCAATGTCCTGCTCTTT----GTGCCT
TTAGCAAAGTAG--TAGTAGTCCGGTTTTATGGAATTGGTGTATCTTGGGTTCCTCGCCGTCTTTGTAAAAGATGGC---
-CCACGATTTGATATGGATCTTCGTTAAAAAGAAAAATCGAGATACATAGTAGTCCAGTTTTTGGCCTTTGTTGCTTGAG
GCCGGGTGTG---------CATCGTGTTTATGTCCCCTTGATGCTTCATTTTGAGTTAGTAAAATTCACGCTTTATCAAA
AAATAACTTGTGCCTTTGTTGGTTCGCTGTATGGTAC-AGTCGCTGTTTGTCGGGGGTTGGCTCCGGCGGGCGGCACTCG
ATGACGACGATGATCCGTGGGGTGCACCGTGCACCCAGCAGGTTCAACACCACCAAACGCGGAACGCACGGCACACGCAC
TCCACATACGGCGCTGTCGTGGCCACCCAGGGCAAAGCACGGTGAAGTGTGCACGGGTGGGGAACCTGGGAGGCTCCCAT
GGGGACTAAGGGGCTGTTTGGATGGTGACCAACACTAGCCTTACCAAAAAATTGGTCACGCCCACGATATTTGGCTAGCG
TTTGGTCTGGTACCATTTTTGGCTCGCCATCGTCGACTTGGGCGCGCCCGCGTACCGTTTTCGCCAACTCGCGGGCGAAA
CAGCGGCGCGGAAATCAGCCGCCAAAATATTGGCTGCCAAATCTGGCGCGAGCCAGCCACCGTGATATAAAAGGCACGAT
TGATTTTTCCCCACCTGTTCGCCACTTTCCCCATCTCTCTTATCTCCACGCACAGAAGCGCTCTCGATCCAATCACCGGG
CGGCCGCGTTCTGCGTCGGTGCCAGCTTCTCCGGCGGCCGGCGACCGGCGACGCTGCTCCACCTCTCGCCCTCCTCTCCC
AGTCAAGCTACGCTCCAAGGTCAGCCACTGAAATCCCCATCCAACACTACTCCGATCCCCTTTTCTATGGTCTGATTTGT
GAGCTCAAATCCCCATCATCCCCTTATGGATGTATGTATTGTACGGAGGTACTACTTGCTAGATCTGAGAATTGCTTGTT
GAATCCTCTTCCCTGTTTGCTGGAAGTAAAATTGGAATGGGACTCCCGTGCATGTTGTTGGTTTGCTGCAAGTAAAAACA
TATGAGACTCTCATCCATATTCTTTGTTTTTTTTTGGGTGATCCATGTTCTTTATTTGACGCAAGTCAAATCACATGAGA
ATAATGATGTTAATTAGTTAATTAACCTGGTATGGTTCTGAAAGTAGTATGGTCTGTTCTTCCCTTTTTGTGCCATATGT
ATGGTCTCTATTTTTAGAACATTAAGGTGGATTTTTTGAAGTTGGATATACATAGTTAACTACTGAGACATGCTTCGATT
TTTTGTCCATCAAGGTGTATTTTTTTTACAAGTTGTGCATCCTTGGTACTGGTTAGAAGCAGGTATCAAGAAGCTAGCTG
ACTCTCTTGCATCTCCTATTGTTTCTGTGCAACCAATGCCACCTACAGATCCATATGCAAACCTTTGGAAGCGGATAAAT
GCCCTTACCATACCAGCTAAGGATAAACTTGAGATTGTAGCATATCTATCCAAGCCAGATCAAGATATCTTTCGTAGTTA
CCTCAACTATGCTGATGAAACAATTCTTGGACAGTGGGTCCTTAGCTTCTTCGAGCCTCGGTTTCAAGAAGATGGTGGCA
ATGGTGGATCTGCAACTGCTCACTGAATGGCCACATGACTAGATAGAGATTGCGGCTTCCTTTTGTTTACCGCTAGGAGC
ATGGGTAACATACATCATGCATATTTTGTCTATATAGAGCAGGCTGGGTGCATCATATTTTGTTTATATGGAGCAGACTT
CGTGCTAGTCTGACTAGTATGACTTACTTGGTCTGGTAAAGACTTGGTTACTATGTGAATTTTATTTAGCCTCCTTGATG
ATTAATCTGATGTATCGAACAATATGAGTTATCTAATGTATTAGTTGAACCATGTCATTGTCAATTTATGAAATGCATGC
TTACAGTTTGTCTCTCTGTGTGTTTCTAAATTGAAAATTTGTATTAATGTCATGTGATATATGTGAGGTAGTGTCTGATG
CTGATCACTTTTTGGCTGGCATGCATTTTGGAACCAAACCAAACACAGTCCAATCAAGGTTGCCAAATATTTGGCTTCAA
ACCAAACGCTGGCCAATGGTTTTGCCAAAAAGTTGGCAAGTGCTATGGGCTACAAACCAAACAGCCATAACCTGCCAATT
TTTTGGTCTTGCCTTCAAGTTGGCCATGCCAATAATTTGGTAGGGCTAGATGGGGCACAATCCAAACATACCCTAAGATC
CGGTGACTTGCCGTGAGCGAGTCACAGGTGAACAGTATGGTGCCTTGCTCCCCTCTCCACACCGTCTGATCAAAAATCTA
TGGACAGATTCGTGTGAACAGCTGAAAGGTACAGTGTATGAGCTACAGGATATGCTACAGGGATTATGCTACAGGAATCC
GGCTACAGTGACCCGACTACAGTGCATGCGCTACAGGAATTCGCCTGCTGTTTTGCTGTTCATATAGATCTGTCCATAGA
TTTTTGATCTGACGGTGTAGAGAGGGGAGCAAGGCACTGTACTGTTCACCGATGACTCGCCCACAGCAAGTCACCGGATC
TCAGTCCCTCCCATGGACTCCCATGCCAGTGGCGCC-GCACGGCAGCCGTGTGGACATGTCGGATGTCGCCAACTCGCCA
TTGCGCAGTGG--------------GCACAGGGTGGCTATCGGCATAATTCAGTTGCGC-AAATAAACGCTGCCATGGCA
GCCAAAGTCAGACAGGCGTTTTCAGTTAGCAGTTTCTTCACTACTTTTCTGTTAAGTTCAGTATCTGCACAAGGGCACGC
TCGCTGTGTGCTCCATGCGTATAGGGAGTATG-----------------CCAGCTGCACGACTTCGTCCGTGGGATGGCA
CAGGCATTATGGAGCTAGTTGCAAGC------------------------------------------------------
--------------------------------TATGCAGCACAGCCGTACGGCACGATCTGTTATTACTG---AATAAAA
GGAAAAGAAGAACAGAAAAGCAG--CAGAACTTTGCGCAGCATAATTCCTTGTCTCGTTGCTTCAGAGCGTGTGTGCTCG
AACTGAGAGAGAAAGAGAGGGCCGTCCGGCAACAGTGCCAGCCGGCAGCGACCATCTGCAAACGGACCGCCCTCCTCCAC
AGTGGTC--------ATAGCGGCGCCTCGCAGCTTCGTACGGGGCACTGACATTTACAGACGGACCAAGTTTTCTTTTCG
AGCAAACAGGCAAGAGCTCTGTCTTTTCATTAAGAAGAA----------------------------------------
>chr2D_759
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--------------------------------------CCTATTCCTTAGGGGCAAGGAAGACTTTTTGACCGTCATCCA
CAATGTCATGCCAGCTCCAAGCCGATTACGTGGTGACATTTTT-CCCTTCAAATGGGGCCTAAATTTGCAAATATGCGT-
AGCCCAGGCGCCATCATGCATTTTGCGCAACCATCGCCCGATGTGTACCTAGT-AAAGACACGGATGGGAGAGCGTTCTA
CAAGAGCTTCCTCA-----------TCTCCATTATTGTCATCTGCCATAGCCACCACA---ATGGAAAAGCTGCTCACCG
TAGTGTGTGTTTCAAGCCTTCTTCTAGCCACTCTTGCGGACGATGCCTCCTCCAGATCTTCTCTTCAGCACCCCTCCCTG
GACGGTCTACAAGGTCGTGTTCTAGGTCGCAAAGGCAGAGAAGAACCGGCACACCACCA---TTACCGGCGTGAAGGCGA
GCACGAGGAGCAGCATGAGGTCAGTACATC-TGCCCCCACCAAGAAATCCAGAAACCCAAAGACAGAGTTCCTG-TGTGC
TTTGAGCAGAGACTCTGCAGCTGTTATTCAGCTGTGTGCCTGTCTCTGCACGAAGCACACACCATTTTCTGTTGAGAAGA
AATTTGTTTTGTTCAGAAGAAAATGTACTTAGCACCATCAGAGTTTCTCTTGACGGCGAAGTGCACATGTGCAGGTGGTG
CCTATGGGAGCGGAGAGTGGCGAAGAGAGGAAGAAGGGAAGTTGGAGGAACGAGGACGAGGAGGCGGTTGCGGCGGAAGG
GCTGATCTCCAGCGCGGACTACAGCGGCGTGGCCATGCACGGCCACAGCTCCCCGCCGGCGCACAAAAAGCATCCCAGGC
CATAGGCCTTCCGCCTCCGGATATTATTCAGTTGGTGTGTAATCTTGTCCAGTTCAGTTTCCTCTTCTTTTTCGGTGCCT
TTAGCAAGTACTCCTAGTAGTCCAGTTCTATGGAATTGGTGTATCCTGAT----------TCTCTGTAAAAGATACCAAG
TCCACGATTTTATATGGATCTTCGTTGAAAAGAAAAATCGAGATACATAGTTGT----------GTCTTTGTTGATTC--
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----------------------TTCGCTGCATGGTAGGAGTAGCTGTTTGTTGTGGGTTGGCTCCGGGCGGCACT-----
-------CGATGATCCGTGGGGTGCACCGTGCACCCAGCAGTTTCAACACTAGC-AACGCAGAACGCTCTCCACATCGGC
CGTTAGCCTCCAGCGCGATGAGTGCGCACCCCTGGAAT------------------------------------------
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--------------------CCAGGACAGTGGCACCGGCACGGGAGCCGTGTGGACATGTCGGATGTCGCCA--------
TTGCGCAGTGGTATCGCTCTCTATCGCACAGGGTGTATGTCGGCATAATTCAGTTGCGCAAAATAAACGCTGCCATGGCA
GCCAAAATC-GACAGGCGTTTTCATTCAGCGGTTTCTTCACTACTTTTCTGTTAGGTTCTGTATCTGCACAAGGGCACGC
TCGCTGTGTGCTCCGTGCGTTCAGCCGTGTCGCTCCCCTGGACTGGACTCCAGCGGCACGACCTCGTCCGTGGGATGGCA
CAGGAATTGTGGAGTCAGTTGCAATCTACTCCCTCGGTACCATAATATAAAACGTTTTTGCAGTTCAAATTTAACTGCAA
AAACGTCTTATATTATGGTACCGAGGGAGTAGTATGCAGCA-----GCACGGCACGATCTGTTTTACTGAATAAATAAAA
GGAAAAGAAGAACAGAAAAGCAG--CAGAACTTTGCGCTGCGCAATTCCTTGTCTCGTTTCTTCAGAGTGTGTGCTCGCC
GAGCAG-------AGAGAGGGCTGT----------------CCGGCAGCGACCATCTGCAAACGGACCGCCGCCCTCCAC
AGTGGTC--------ATAGCGGCGTCTCGCAGCTTGGGGA----CACTGAGATTTACAGACGGACCAAGTTTTCCTTTCA
AGCA-ACATGCAAGAGCTCTGCCTTTTCGTTAAGAAGAAGAGAA-----------------------------------
>SNPs
-----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS---------S-----------------------------S-------S-------------S-----
----------------------------S-SSS-----------------------------S---SS------------
----S---S----------------S------S-----SSSSSSSSS-SS------------S-----------------
----------------------------------------S-----------------SSS-------------------
----------------------------------S--------S----------------------------------S-
-------------------------------S---------S-----------------SSS------------------
S----------------------------S-----------------------S----S-------------S-S---SS
-------------------------------------S----------S---------S---------------------
----------------------------------------------S--------S-----------S------------
-------------------S-----------S------S-----------------------------------------
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--------------------------------------------------S-----------S-----------------
--------------------S-------S-S--------S-----SS---S-----------------------------
-----------------------S--------------------------------------------------------
------SSS-SSSSSSSSS---S---S--S-S-------------------SS-S---S------S---S-------SS-
----S----------------------------S-S--------------------S-----------------------
---------------------------------------------------------------------------S----
---------SS--------------------------------------------------S------------------
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-----------SSS-SS--------S------S-----------------S-S----------------SS---------
--------S-------------------S-S-------------------------------------------------
------------------S-------------------------------------------------------------
----------------------------------------------------S---------------------------
------S----S--S--------SS------------------S-------------------------SSSSSSS----
---------------------------------S----------------------------------------------
-S-----SSSSSSSS-----S------S-----S-------------------S----S----S----------------
-----------------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_205
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-------------------------CACAACACAAGGCTCAACCG-----------------------------------
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>reverse_1711
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------------------------------CGGAATTGGGGTATCGGGAG------------------------------
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