>input_sequence_75370
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--------------------------------------------------------------ATGAGTTTGTCTTCCATA
GCAAGACGACTATGTTGTTCAAGACAGTCATCCACAAGTCGACTTTCAGTAGTTTTGGCTCGTCTGCACAGCACCGAGGC
CGCAAAAGACGCTGGTGCTAAGAGGTACAAGTATCCTGAAGTCTATGACCCATATGGGCCTATGCCACCAGCATCAGAGA
AGGTTGTGGGTCTAGCGGACCGCATTGCCGCTCTTCCTCCTGAGGAGATCAAGCAGATAGCTCCAGCTCTCCTTCTCAGG
CTAAACCAGCCAGCACCACAGGCAATTTCTGGCCAGGGTTTTAGTATGGGTTCTCAAGGTGGTGCAGGGGCTGGTGCCGC
AAAGTCTGAAGAGAAAAAGGCTGAGAAGTTGGTATTTGATGTCAAGTTGGAGAAATTTGAGGCTGCTGCAAAGATTAAGA
TTATCAAGGAGATCAGAACGTTTACCGATTTGGGGCTGAAGGATGCAAAGGAGCTGGTGGAGAAGGCCCCTGTCATTCTG
AAGCAGTCACTCACGAAGGAGGAAGCGGAAGCAATCATCGCAAAGATCAAGGCAGCTGGTGGTGTTGCTGTGATGGAGTA
A-------------------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G189400
CCCCGTTACCGCCCTCCGCGTACCACCCTTCGCCGCGCGGAAGGCCAGCTCCCGCCGGAGATCCCCCGCCAACATGCTCG
TGGTGGGGCATCAATCCATTCGGCTTGTTGCGGGTTTGTTTGCTGCACGGTGGAGTAGCATATATTACCAAGAGCAGTTT
ATTTCCCGGAAATTTCGTTAGGTCCGCCCCTGGGTTAACTAGTGAAGACCTGGGAGTGTGAGATCGATGCGCTGATTGAC
ACCTGATGAAGTTT--------TAGTTGAGGTGGTCTAGGAGGGCTTCATGTGCCTTGCCGTGGGTGACGGTTTTAGGTT
TTAGGTTTTAGGGTGGGCGTCTGCTGCTCT--CACCCCGCTGTCATTTGAAAGCATTTGCTTTAGCAGATAAATTGCCCT
GTAGGTCTGGTTCACAATCTTTTGCCCGTGAGATTGAATGCGGCGATTCACTGGGTGAGCTGTAATGCTCTGGCTCATTG
GGGGACCTCCTAACCAGAGATTGAATCCCCCAGTTCATCTACTTCTTCTATCAATCATGTCGGAGGACTGACCTCTCTTC
TCATGGAATAGAGGAACTTATGCTGCTCGCCCTTGTCTTTTGCTGTGCGGAATTTCGGAACTGGGGGAAGCTAAAGTATG
TAGGAGTATTTCTGTAGGCAATGT--GAAAGGGTTTGGTGGAAAATAGCCTTCTTTTCTGGCAGCTGAGGTACGCTGAGC
ATTTAGTTCCAAGTCCAATA-------TCTCTAAATCGTCGGTTAGGTTGCA-TCTAAGCTTAAGTAGTTACTATGATTT
GTCCACTTCTGTTTAGCTGCTCTTATTTGACATACGACGCATATGCTTCTTCTTGCGCGCT--AGGTTATTTATTAATTA
AAAATGCATTTAGTTACGCAGGAGATTTCCATGGATCATGTTTAGTGTTAATTTCGTTTTTGTTCTTGTGCAGGGCAGCC
AATCATTAGTTTCTTCTCCATCCCTTGCTATATTTTTGTGCCAATACCTAGCTGACAGTAGGATGAGTTTGTCTTCCATA
GCAAGACGACTATGTTGTTCAAGACAGTCATCCACAAGTCGACTTTCAGTAGTTTTGGCTCGTCTGCACAGCACCGAGGC
CGCAAAAGACGCTGGTGCTAAGAGGTACAAGTATCCTGAAGTCTATGACCCATATGGGCCTATGCCACCAGCATCAGAGA
AGGTTGTGGGTCTAGCGGACCGCATTGCCGCTCTTCCTCCTGAGGAGATCAAGCAGATAGCTCCAGCTCTCCTTCTCAGG
CTAAACCAGCCAGCACCACAGGCAATTTCTGGCCAGGGTTTTAGTATGGGTTCTCAAGGTGGTGCAGGGGCTGGTGCCGC
AAAGTCTGAAGAGAAAAAGGCTGAGAAGTTGGTATTTGATGTCAAGTTGGAGAAATTTGAGGCTGCTGCAAAGATTAAGA
TTATCAAGGAGATCAGAACGTTTACCGATTTGGGGCTGAAGGATGCAAAGGAGCTGGTGGAGAAGGCCCCTGTCATTCTG
AAGCAGTCACTCACGAAGGAGGAAGCGGAAGCAATCATCGCAAAGATCAAGGCAGCTGGTGGTGTTGCTGTGATGGAGTA
AAGGATCAAATTCCAGACATTGCAATCCTTATTTCTTTCTTCTGATTTTGTTAGCATGATGGAGCATTCGAGGTCTGAGA
ATCTCTATACTTTTGGAGGAAATGGTTTACTTGTGACAGGTAACGAAAGGGAGATGCGAACTAGATATTTAGTTGCTATG
TTGGCGTTCTAGAATAAGACTTTCTTTCAGTATCACATATCT--TTCCTGACGGAACA-CTGTTGATACTGGAACTGGGT
GAAAGAAATGTCGACGCTGTTTTTTATGAATGTGATGCTGATGCCTTTTGTTTGTCTTGGATGTATGTATTGTGAATCAT
TTTGGATTTTGCTACAGATCAAATGCCAAATTTTTTAGCATGGCAAATGGAATGCCCAAGATGGCAAATTATGTTGTTGC
GAGGATGTCAATTTTCTTTGCCAAACATTCCCGATCATTTTAAATCACGTCCTTTTGGTGTTTGATTTGAAACGGCTTGC
AATTTATTTGCCGAACCTGTAATTAGAAGTAAATGATCCATATAGGTCACGTCCTGTTTTGCTTTGCTTGAAAAC-TACC
AGGAAGTTTCTTATAGCATATCCTCATTCAGCCTAGTGAATTGAAGTTCCTTTTGAATAAGCTATCAG-TTTCATATAAA
CGAATCCATTTCGCCCGTACATGAAAGTAAAAGAAGATGAATGTCCCAGCCTCAGTCCGTCTTCCATGCATGAAGAAAGA
AGCTGTAATCCGCCGGGTCACCGGGAATGCCTCTCCCGCTCTCCAACCCGGCCTCGTCGCTGTCGACCTCCGGCGGAGCA
CCCGGCTTGAAGGCGAAGACCGCCTGGGAGCCCGGGCCGGCGAAGATCCAGTCGTGCACGTCCCAGAGCACCTGCACCGG
CGACTGGTCGACGAGCACCGTCTGGTTGCCCCGGAACTTCCACTGAAGGTTCTTGACCTGCACCAGGGCGCGGCCGTCCA
CCGTGATCGCCATTTCTGGTTCCCTTGGCCCGGCTAGCGAGGCCTC
>chr6D_3
--CCGTTACCGCCCTCCGCGTATCACCCTTCGCCGCGCGGAAGGCCAGCTCCCGCCGGAGATCCCCCGCCAACATCCTCG
TGGTGGGGCATCAATCCATTCGGCTTGTCGCGGGTTTGTTTGCTGCGCGGTAGAGTAGTTTATATTA-CAAGAGCAGTTT
ATTTTCCGGGAATTTCGTTAGGTCCGCCCCTGGGTTAACTAGTGAAGACTTGGGAGTGTGAGATCGATGCGCTGATTGAC
ACCTGATGAAGCTGTAGACTTGTAGTTGAGGTCGTCTAAGAGGGCTTCATGTGCCTTGCCATGGCTGAG-------GGTT
TTAGGGTTTAGGGTGGGCATCTGCTGCTCTCACACCCCGCTGTCATTTCAAAGCATTTGCTTTATCAGATAAATTGGCCT
GTTGGTCTGGTTCATAGTCTTG-GCCTGTGAGATTGATTGCGGCCATTCACTGGGTGAGCTGTAATTTTCCGGCTCATTT
GGTGACCTCCTAACCAGAGATTGAATCCCCCAGTTCATGTACTTCTCCTATCAATCATGTCGGAGGACTGAGCTCTCTTC
TCATGGAATAGAGGAACTTATGTTGCTCGCCCTTGCCTATTGCTGTGCGGAATTTCGGAACTGGGGGAAGCTAAAGTATG
TAGGAGTATTTCTGTAGGCAATGT--GAAAGGGTTTGGTGGAAAATTGCCTTCTTTTCTGGCAGCTGAGTTATGCTGCGC
ATTTAGTTCCAAGTCAAATACTCCA-TTCTCTAAATCGTCAGTTACGTTGCCGTCTAAGCTTAAATAGTTACCATGACTT
GTCCACTTCTGTTTAGCTGCTCTTATTTGAAATACGACGCATATGCTTCTCATGC-----TAGAGGTTATTTGTTAATTA
AAAATGCATTTAGTTACGCAGGAGATTTCCATGGATCATATTTAGTGTTAATTTCGTTTTTGTTCTTGTGCAGGGCAGCC
AATCTTTAGTTTCTTCTCCTTCCTTTGCTATATTTTTGTGCCAATACCTAGTTGACGGTAGGATGAGTTTGTCTTCCATA
GCAAGACGACTATGTTGTTCAAGACAGTCATCCACAAGTCGACTTTCAGTAGTTTTGGCTCGTCTGCACAGCACCGAGGC
TGCAAAAGACACTGGTGCTAAGAGGTACAAATATCCTGAAGTCTATGACCCATATGGGCCTATGCCACCAGCATCAGAGA
AAGTTGTGGGTCTAGCGGACCGCATTGCCGCTCTTCCTCCTGAGGAGATCAAGCAGATAGCTCCAGCTCTCCTTCTCAGA
CTGAACCAGCCAGCACCACAGGCAATTTCTGGCCAGGGTTTTAGTATGGGTTCTCAAGGTGGTGCAGGGGCTGGCGCCGC
AAAGTCTGAAGAGAAAAAGGCTGAGAAGCTAGTATTCGATGTCAAGTTGGAGAAATTTGAGGCTGCTGCAAAGATCAAGA
TTATCAAGGAGATCAGAACATTTACCGATCTGGGGCTGAAGGATGCGAAGGAGTTGGTGGAGAAGGCCCCTGTTATTCTG
AAGCAGTCACTCACGAAGGAGGAAGCGGAAGCAATCATCGCAAAGATCAAGGCAGCTGGTGGTGTTGCTGTGATGGAGTG
AAGGATCAAATTCTGAACACTGCAATCCTTATTTCTTTCTTCTGATTTTGTTAGCATGATGGAGCATTCCAGGTCTGAGG
ATCTCTATACTTTTGGAGGAAATGGTTTACTTGTGACAGGTAACGAAAGCGAGATGCGAACTAGATATTTAGTTGCTACG
TTGGCGTTCTAGAATAAGACTTTCTTTCAGTATCGCATATCT--TTCCTGATGGAACA-CTGTTGATACTGGAACTGGGT
GA-AGAAATGTCAGACGCCG-TTTTATGAATGTGATGCTGATGCCTTTTGTTTGTCATGGATGTATGTATTGTGAATCAT
TTAGGATTTTACTACAGATCGAAGGCCAGATTTTTGAGCATGGCAAATCGAACAACCAAGATGGCAAATTATGCTGT---
GAGGATGCCAATTTTCTTTACCAAACATTCCTGATCATTCTAAATCACGTCCTTTTGGTGTTTGATTTGAAATGCCTTGC
AATTTTTATAGCGAACCTGTAACTAGAAGTAAATGATCCATATAGGTCACGTCCTGTTTTGCTTTGCTTGAAAAC-TACC
AGGAAGTTTCTTATAGCATATCCTCATTCAGCCTAGTGATTTGAAGTTCCTTTCGAATAAGCTATCAG-TTTCATATAAA
CGAATCCGTTTCGCCCGTACATGAAAGTAAAAGAAGATGAATGTCCCAGCCTCAGTCCGTCTTCCATGCATGAAGAAAGA
AGCTGTAATCCCCCGGGTCGCCGGGAATGCCACTCCCGCTCTCCAACCCGGCCTCGTCGCTGTTGACCTCCGGCGGAGCA
CCCGGCTTGAAGGCGAAGACCGCCTGCGAACCCGGGCCGGCGAAGATCCAGTCGTGCACGTCCCAGAGCACCTGCACCGG
CGACTGGTCGACGAGCACCGTCTCGTTGCCCCGGAACTTCCACTGGAGGTTCTTGACCTGCACCAGGGCGCGGCCGTCCA
CCGTGATCGCCATTTCCGGTTCCCTTGGCCCGGCTAGCGAGGCCTC
>chr6A_3
--CCGTTGCCGCCCTCCGCGTGTCACCCTTCGCCGCGCGGAAGGCCAGCTCCCGCCGGAGATCCGCCGCCAACATCCTCG
TGGTGGGGCATCAATC-----------TTGCGGGTTTGTTTGCTGCGCGGCGGAGTAGCATATTTTACCAAAAGCAGTTT
ATTTTCCGGAAATTTCGTTAGGTCGGCCCCTGGGTTAACTAGTGAAGACTTGGGAGTGTGAGATCGATGCGCTGATTGAC
ACCTGATGAAGTAT--------TAGTTGAGGTGGTCTAGGAGGGCTTCATGTCCCTTGCCATGGGTGAG-------GGTT
TTAGGTTTTAGGGTGGGCATCTGCTG--CTCACACCCCGCTGTCATTTCAAAGCATTTGATTTAGCAGATAAATTGCCCT
GTAGGTCTGGTTCATAATCTTG-GCCCGTGAGATTCATTACGGCCATTCACTGGGTGAGCTGTAATGTTCCGGCTCGTTG
GGTGACTCCCTAGCCAGAGATTGAATCCCCCAGTTCATGTACTTTTCCTATCAGTCATGGCGAAGGGCCGAGCTCTCTTC
TCATGGAATAGAGGAACTTATGTTGCTCGCTCTTGTCTATTGCTGTATGGAATTTCGGAACTGGGGGACGCTAAAGTATG
TA------TTTCTCTAGGTAATGTGAGAAAGGGTTTGGTGGAAAATAGTCTTCTTTTCTGGCAGCTGAGTTATGCTGCGC
ATTTAGTTCCAAGTGTGATATTCCATTTCTCTAAATCGTCAGTTAC--------------------------CATTACTT
GTCCACTTCTGTTTAGCTGCTCTTATTTAGAAAACGACACATATGCTTCTTCTTGCGCGTTAGAGGTTATTTATTAATTA
AAAATGCATTTAGTTACGCAGTACATTTCCATGGATCATATTTAGTGTTAATTTCGTTTTTGTTCTTCTGCAGGGCAGCC
AATCTTTAGTTTCTTCTCCTTCCCTTGCTATATTTTTGTGCCAATACCTAGTTGACAGTAGGATGAGTTTGTCTTCCATA
GCAAGACGACTATGTTGTTCAAGACAGTCATCCACAAGTCGACTTTCAGTAGTTTTGGCTCGTCTGCACAGCACCGAGGC
CGCAAAAGACACTGGTGCTAAGAGGTACAAGTATCCTGAAGTCTATGACCCATATGGGCCTATGCCACCAGCATCAGAGA
AAGTTGTGGGTCTAGCGGACCGCATTGCCGCTCTTCCTCCTGAGGAGATCAAGCAGATAGCTCCAGCTCTCCTTCTCAGG
CTGAACCAGCCAGCACCACAGGCAATTTCTGGCCAGGGTTTTAGTATGGGTTCTCAAGGTGGTGCAGGTGCTGGCGCCGC
GAAGTCTGAAGAGAAAAAGGCTGAGAAGTTAGTATTCGATGTCAAGTTGGAGAAATTTGACGCTGCTGCAAAGATTAAGA
TTATCAAGGAGATCAGAACGTTTACTGATTTGGGGCTGAAGGATGCAAAGGAGCTGGTGGAGAAGGCCCCTGTCATTCTA
AAGCAGTCACTCACGAAGGAGGAAGCGGAAGCGATCATCGCAAAGATCAAGGCAGCTGGTGGTGTTGCTGTGATGGAGTG
AAGAATCAGATTCTGGACATCACAAATCTTTTTTCTCT-TTCTGATTTTGTTAGCATGATGGAGCATTCGATGTCAGAGG
ATCTATATTC---------------------TGTGACAGGTAACGGAAGCGAGATGCGAACTAGATATTTAGTTGCTACG
TTGGTGTTCTAGAATAAGACTTTCTTTCAGTATCACATATCTCTTTCTTGACGGATCACCTGTTGATACTACAACTGGGC
GGAAGAAATGTCTGACACCATTTTTATGAATGTGATGATGATACCTTTTGTTTGTGTCGGTGGTATGTATTGTGAATCAT
TT------------------------------------------------------------------------------
----------------------------------------TAAATCACGGCCTTTTGGTGTTTGATTTGAAACGCCTTGC
GATTTTTATAGCGAACCTGTAGCTACAAGGAAATGTTCCATATATGTCACATCCTGTTCTGCTTTGCCCCAATACTTACC
AGGAAAATATTCTTAGCATATCCTCATCCAGCCTACTGATTTGAAGTTCCTTTTGAATAAGCTATCCGTTTTCATATAAA
CGAATCCGTTTCGGCAGTACATGAAAGTAAAAGAAGATGAATGTCCCAGCCTCAGTCCGTCTTCCATGCATGAAGAAAGA
AGCTGTAATCCGCCGGGTCGCCCGGAATGCCACTCCCGCTCTCCAACCCGGCCTCGTCGCTGTCGACCTCCGGCGGAGCA
CCTGGCTTGAAGGCGAAGACTGCCTGCGAGCCCGGGCCGGCGAAGATCCAGTCGTGCACATCCCAGAGCACCTGCACCGG
CGACTGGTCGACGAGCACCGTCTCGTTGCCCCGGAACTTCCACTGAAGGTTCTTGACCTGCACCAGGGCGCGGCCGTCCA
CCGTGATCGCCATTTCCGGTTCCCTTGGCCCGGCTAGCGAGACCTC
>SNPs
SS--------------------S----------------------------------------------------S----
----------------------------------------------S---------------------------------
----S--------------------------------------------S------------------------------
------------------------------------------------------------S-------SSSSSSSS----
------------------S-----------------------------S-------------------------------
--------------S------SS--------------S------S----------------------S--S---------
--S-----------------------------------S-------S------------------------S--------
----------------------S---------------S-----------------------------------------
---------------------------------------------------------------------S--S----S--
---------------S------------------------S----S-----S------------S-------S----S--
------------------------------S----------------------------S--------------------
---------------------------------------S----------------------------------------
----S--------------S-------------------------------S----------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
-S------------------------------------------------------------------------------
--S-----------------------------------------------------------------------S-----
------------------------------S-----S-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
-------------SS----------------------------------------------------------------S
-------------------------------------------------S----------------------------S-
--------------------------------------------------------------------------------
------------SSSSSSSS------------------------------------------------------------
--S-------S---------S--S----S------S------------S---SSS------------------S---SSS
-------S-----------S-----------S-------S----------------------------------S-----
-----S-S-SS-----------S---------------------------------------------------------
---------------------------------------S----------------------------------------
-------S------------------------------------------------------------------------
-------------------S-----------S------------------------------------------------
--------------------------S-----------------------------------------------------
-----------------------S--------------------------------------------------------
----------------S-----------------------------
>forward_415
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---------------------------------------------------------------------------GCCCT
GTAGGTCTGGTTCAC-----------------------------------------------------------------
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>reverse_1355
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--------------------------------------------------------------------------TGCCGC
AAAGTCTGAAGAGA------------------------------------------------------------------
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>forward_860
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----------------------------------------ATATGCTTCTTCTTGCGCGC--------------------
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>reverse_2352
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-------------------------------TCTCCCGCTCTCCAACCC-------------------------------
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