>input_sequence_75360
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-------------------------------------------ATGACAGGAGCCGCCGCCACCGAGCTGATTCTCCCGG
CCCTGCGCGGCGCCTACCAGCGCGCCGGGCACTCCTTCTCCTCCTCCTCCGTCCGCGCGCGGCCGGTGACCGGGACGCAC
CTCTTCCAGATCGACGGCTACAAGCTCGTGCACAGGATGGTCGACGGCTCCTCCATCAAGTCCCGCAAGTTCCGCGTCGG
CGGCATCGACTGGCAGGCCGCCTACCACCCCCACGCCCGCGGCCT------CTGCGTCGGCGCTGGCCTCCACCTCGCCG
GGACCAACAACTCCGGCAAGAACTCCACCGCCATGTGCCAGGTGAGCATCCTCGACCGCGCGGGGGTGCCGGCGTTCAGC
CGCCTCATCGAGCCGCGCGACTTTCACGGGATGATCTACCCTGACCGGTCGTCCTGGAGCGTCGACGTGCACGACTTCGT
CAAAAGGGAGGAGCTCCTGAAGTGGGCGGAGGAGCACGTCGACGACGACCGCCTCCGCCTCCGCTATGATGTCCTCGTCC
TCCGGATGCGATCAGAGTCTCCCGTCCGGGGCTACTTGAAGGACTTTTGGGAGAGACTTAAGAACTAA------------
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>chr5B_1_TraesCS5B01G324900
GAGAGGAGTCCACGGCGGCGGTGGTTTCAGGCGAAACGGTGGGGCCGGAGGCGACTCGCGACGGGAGCGAGCTCCGCAAC
CTGGAGATCGATCTGTTTTTTCTGAGGCGCTGGAATCCAGATCGATCGGCAGAGACGGCAGTGGCCACCGAGCCTGGCGG
CGTGCGTGCTATATTGGGCCAGGTGAGGCTGCTGGGCCGGACTGGACTGGGTCAGTTTGCTTTTTCACTGCAACCTTTCT
TTTCTTTTATGGGCTGTAACTAGTATATAACATGGTTTGGCCCAACACTGTAGCTCCGCCCCTGCATAGTCATAGATGCG
GCTGCTTCCATTGGCATCCGAAATAAAGGCTCGCCGGACCAGCGAGCCGCCGCGGCGCCTTGAGAGGCCGTTGACGTGCC
TTCGCTTCGAGGAGCTGCCTCCTCGCCGGGATGGGCCGTGGCTGTGGTGCATCGACTTGACGCTGTGGATGACGCTTCCG
CCGCGCTGGACATGTGGGCAATGGAGCTGTTCCGTCGCTGATGCAGACGATCAGCCCACTCTGCCGCCGGTACCTGGGCA
ACACCATCGTTGACTGAAGCATTGCCTTTTTGCTAGCTTTGGAAGGTCACCAACTCACGCTAGGGAAATAGGCATCGTCC
TAGCCCAAACAAAGTTTTGTTTTGCTGTAAAACCCCGTTTACAGAAAACTCATCGCTAATTCTCTGTATCCAAACAAACC
ACTAATAGTAGGGACGTAAAATAACCATGATTGGACATTAGGGAGGAAGGGAGGGACCACTAATTAATGAAAATCCGGGG
ATTAGCGGGAGAGGGCCCCGAGCGTAAGTTTAGGTTTTTCGGTGTGAAAAATCGTAGGAAAGGGTTTCTTTCCTAGGATG
TCGACGGGAATATCACAAGGAAATCTTGAGAAACACGGA---TCTCATCATAGCCCATGCATATAATACACTCAAGAACG
GTATACACGTCCCATACCAACATCGTATCCACCATCGATCGCCATGACAGGAGCCGCCGCCACCGAGCTGATTCTCCCGG
CCCTGCGCGGCGCCTACCAGCGCGCCGGGCACTCCTTCTCCTCCTCCTCCGTCCGCGCGCGGCCGGTGACCGGGACGCAC
CTCTTCCAGATCGACGGCTACAAGCTCGTGCACAGGATGGTCGACGGCTCCTCCATCAAGTCCCGCAAGTTCCGCGTCGG
CGGCATCGACTGGCAGGCCGCCTACCACCCCCACGCCCGCGGCCT------CTGCGTCGGCGCTGGCCTCCACCTCGCCG
GGACCAACAACTCCGGCAAGAACTCCACCGCCATGTGCCAGGTGAGCATCCTCGACCGCGCGGGGGTGCCGGCGTTCAGC
CGCCTCATCGAGCCGCGCGACTTTCACGGGATGATCTACCCTGACCGGTCGTCCTGGAGCGTCGACGTGCACGACTTCGT
CAAAAGGGAGGAGCTCCTGAAGTGGGCGGAGGAGCACGTCGACGACGACCGCCTCCGCCTCCGCTATGATGTCCTCGTCC
TCCGGATGCGATCAGAGTCTCCCGTCCGGGGCTACTTGAAGGACTTTTGGGAGAGACTTAAGAACTAAATCTT-CTTTTC
TAGTTG--TAAT------ATTCGGTGAGGATAATGCAAGACGCAAGAACAAGAACGTATAGTAGC---AGTAGTAATATT
TTGTGAGGATCATATGATTTTGGTGCATTTCAGTTCTTTTTCATAAGTACTGCCTCCGTTCCTAAATATAAGCTTTTTTA
GTGGTTTCAAATGAACTATAGCATACAAATGTATATAAACATATTTTAAAGTGTAAATTCACTCATTTTGCTTCATATGT
AGTTCCTTGTTAAAAAGACTTATACTCCCTCCGTCCGGAAATATTTGTCGGACAAATGGATGTATCTAGATGTATTTTAG
TTGTAGATACATCTATTTTTATCCATTTTTCCGACAAGTATTTTGGGATGGAGGGAGTACGTGATTAGATAGTGCAAGTG
CGCTAAAGTTTTTCTTTTTGTTGCACGCATTGTTTGTAGAAAAAAAATCTCTTCTATGAATATCCAATTTTTTGCACCTA
ATACTCCATAGATAGTGGCCTCTCCTCCGCCAGGGAGATAGTGGTCTCTCCTCCGGCAGTGGCCCGAGGCGGCGGGCGGT
GGAGTCGATGGTTTCCTTCACGCGGTCTGGATCTTCATGTTCACGGCTTTTGCTGTCGCCGGGTGGCTTCGGCCCTTCCG
TTCTAGCTGTGCAAGCTCTCCGGCTGCTTGATCGCAGTTTTCTTGCTGCCTTATTCTCTGTAGTGAATTTGGCATGTATT
TTTCAGTTTTTGGTCAAGTCTTTGCCTTTGTAATTCAGCACCATTGTATCCTAGCCGGTTGATGGCTTCATTAATTTGAA
GTCGGGCCTTTGTGCCTTTTCTCTAAAAAAAATACTCCATAGATAGTTTGAATTGGATAGCAGCAATAATCAATTTTAGC
GTGAATTGTTTGGAGAGGAAGTTTG-------------------------------------------------------
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-------------------------------------------------------------------------CCCTTTT
TAATGGATTCGGCACGTGCAATTTCTTTTCCTCTGAGACAATCCGCAAATTTTACTTTTACTCCCCTTATATCCGTTTGT
TTAGTTAA
>chr5D_816
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---------------CCCCGAGCGTAAGTTTAGGTTTTTCGGTGTGAAAAATCGTAGGAAAGGGTTTCTTTCCTAGGATG
TTGACGAGAATATCACAAGGAAATCTTGAGAAACACTGACGATCTCACCAAAGCCCATCCATATAATACACACAAGAACG
GTATACACGTCCCATACGCACATCGTATCCACCATCGATCGCCATGACAGGAGCCGCCGCCACCGAGCTGATTCTCCCGG
CCCTGCGCGGCGCCTACCAGCGCGCCGTCCACTCCTTCTCCTCCTCCTCCGTCCGCGCGCGGCCGGTGACCGGGACGCAC
CTCTTCCAGATCGACGGCTACAAGCTCGTGCACAGGATGGTCGACGGCTCCTCCATCAAGTCCCGCAAGTTCCGCGTCGG
CGGCATCGACTGGCAGGCCGCCTACCACCCCCACGCCCGCGGCCT------CTGCGTGGGCGCTGGCCTCCACCTCGCCG
GGACCAACAACTCCGGCAAGAACTCCACCGCCATGTGCCAGGTGAGCATCCTCGACCGCGCGGGGGTGGCGGCGTTCAGC
CGCCTCATCGAGCCGCGCGACTTTCACGGGATGATCTACCCTGACCGGTCGTCGTGGAGCGTCGACGTGCACGACTTCGT
CAAACGGGAGGAGCTCCTGAAGTGGGCGGAGGACCACGTCGACGACGACCGCCTCCGCCTCCGCTATGATGTCCTCGTAC
TCCAGATGCAATCAGAATCTCCCGTCCAGGGCTACTTGAAGGACTTTTGGGAGAGACTTAAGAACTAAATCTT-CTTTTC
TAGTTG--TAATATATTAATTCGGTGAGGATAATGCAAGACGCAAGAAC------GTATAGTAGC---AGTAATATTTT-
---TGAGGATTATATGATTTTGGTGCATTTCAGTTCTTTTTTGTAAGTA-------------------------------
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>chr5A_816
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---------------CCCCGAGCGTAAGTTTAGGTTTTTCGGTGTGAAAAATCCTAGGAAAGGGTTTCTTTCCTAGGATG
TTGACGTGGATATCACAAGGAAATCTTGAGAAACACTGA---TTGCATCATAGCCCATGCATATAATACACACAAGAACG
GTATGCACGTCCCGTACGCACATCGTATCCACCATCGATCGCCATGACAGGAGCCGCCGCCACCGAGCTGATTCTGCCGG
CCCTGCGCGGCGCCTACCAGCGCGCCGTGCACTCCTTCTCCTCCTCCTCCGTCCGCGCGCGGCCGGTGACCGGGACGCAC
CTCTTCCAGATCGACGGCTACAAGCTCGTGCACAGGATGGTCGACGGCTCCTCCATCAAGTCCCGCAAGTTCCGCGTCGG
CGGCATCGACTGGCAGGCCGCCTACCATCCCCACGCCCGCGGCCT------CTGCGTCGGCGCTGGCCTCCACCTCGCCG
GGACCAACAACTCCGGCAAGACTGCCACCGCCATGTGCCAGGTGAGCATCCTCGACCGCGCGGGGGTGCCGGCGTTCAGC
CGCCTCATCGAGCCGCGCGATATTCACGGGATGATCTACCCTGACCGGTCCTCGTGGAGCGTCGACGTGCACGACTTCGT
CAAACGGGAGGAGCTCCTGAAGTGGGCGGAGGACCACGTCGACGGCGACCGCCTCCGCCTCCGCTATGATGTCCTCGTCC
TTCAGATGCGATCAGAATCTCCCGTCCAGGGCTACTTGAAGGACTTTTGGGAGAGACTTAAGAACTAAATCTTTCTTGTC
TACTTGTATAAT------ATTCAGTGAGGATAATGCAAGACGCAAGAAC------GTAGTATAATACTAGTAATATTTT-
---TGAGGATTATATGATTTTGGTGCATTTCAGTTCTTTTTTGTAAGTAC------------------------------
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>chr5D_980
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----------------------TCGTATCCACCGTCGATCGCCATGACCGGCGCCGCCGCCACCGAGCGGATGCTTCCGG
CCCTGCGCGGCGCCTACCAGCGGGCAGCGCACTCCTTCTCCTCCTCCGGCGTCCGCGCTCGGCCGGCGATCGGGTCCCAC
CTCTTCCAGATCGACGGCTACAAGCTCGCCCACAGGATGGTCGACGGCC---CCATCATGTCCCGCAAGTTCCGCGTCGG
CGGCCTCGAGTGGCGGGTCGCCTACAGCCCCAACGCCCACGGCCACGGCCGCTTCGTCGGCGCTGGCCTCCACCTCGCCG
CCCAAAACCAGACCGGCAAGGACCTGTCAGCCATGTGCCAGCTGAGCGTCCTCGACCGCGCGGGGGTGCCGGCTTTCAGC
CGCCTCATCGAGCCGCGCGATCA---------GATCCACCATTACCGGTTGTGGTGGAGCGCCGACGCGCACGACTTCGT
TAGCAGGGAGGAGCTCCTGAAGTGGGTGGAGAACCACGTCGACGACGACCGCCTGTCCCTCCGCTGCGACGTCCTCGTCC
TCCGGATGC-----------------------------------------------------------------------
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>chrUn_2410
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------------------------------AATACTCCATAGATAGTCCGAATTGGATAGCAGCAATAATCAATTTTAGC
GTGAATTGTTTGGAGGGGAAGTCTACCCTTTTTAATAGATTCGGCGCGTGCAATTTCTTTTCCTCCGAGACGACCCGCAA
TTTTTACTTTTACTCCCCTTATATCTGCTTTTTTAGTTAATTCAATGGCTTTTTTCATTGCCTTTCGGAATGAAACTCTA
TTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGCTGTCTATAAGGTTCTTTCACTTTTTCGATAGAAATATT
AAATCTCTGGTTTACAGAGTTAATTTCCTTTTGTAGATCTTTCTCTAATTCTTCGATTGCTCCTTTTTTCTTTAATAAAT
TTGGGAATCCAATATGGATTATGACGTGGATCGTATCGATTTCTTTTTGGATTTCTATATGTGTAATTACTTCGGAACTT
GAACCTGAGTCCATTTTTCTATTATGTGTAATTACTTCGGAACTTGAGTCTGATTCTATTTTTCTATTCGAGCCCTTTNN
NNNNNNNNAGCTCCTATGACTCGAATACACATCAATTTTCGAGCTCCACTATTATCTGCTACATTTAAAAGGGTCTGAGG
TTGAATCATATTATTTTTTATTTTGATTTCAATTTGTTATTTCAATGCAAAAGGATGAAAGAAATATTGTCTTTCCAGAA
AGAAAAACCGGGCATTTTTTTTTATCTTCCATACCCCTTTTAGGGTTCTATATCTCTAATCGAATAAATTGACTTCGTAT
GGGCATTTTACTGGCAGCTATGGAGATAGCTGCTCTAGCTACAGTTTCAGATACTCCCCCCATTTCATAAAGTATACGAC
CAGGTTTAACAACGGATACCCAATATTCGGGGGACCCCTTTCCCGAGCCCATACGTGTTTCCGTGGGTCTTAGTGTAACC
GGTTTGTCGGGAAATATACGTACCCATATTTTTCCACCACGACGTGCATATCGTGTTATTGCTCTTCGTCCTGCTTCTAT
CTGTCTCGCCGTGATCCAAGGGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACGATTGCCTCGGCAAGATT
TTCCTTTCATTCTTCCTCTATGTGGTTTGCGAAATCTGGTTCTTTTGGGGTTATAGTCGATGGTTCTCTTTCTTAGTTCC
ATCTCTACTGCAAAACTGGACATGAGAGTTTCTTCTCATCCAGCTCCTCGCGAATGGAATGAGAAAGCATGTAAATTTCT
CTAATTCATAATATTCAAAAATATTACGGTACGGATAGATACACATTAATAGATAATAGAAAAAGTTCGGTTTTTTTATA
TTGAATTTGTTAAAACAGAAAAATATAATATATAGTCAAAAAAGAAGATCTAGAATATATCCAGATGTGTGTGTATATTT
ATCTAAATTCTATATTTATAGATAATGTAATCCTTCTTAAAAAAATCCTTATTTTTACTCTTATTGAATCGCGGTAAAGT
ATTCTAATTCAATAAGAATTTCGCGGGCGAATATTTACTCTTTCCTGTCTTATTTGTTAATTTATAAACTTACCAAATAA
GACAATTTTTTTGGTTTGTTCCGCCATCCCACCCAATGAAGTGTTAGGATTCTTTTCAATAAAATCCTATGGAATCATAG
GTTCTGTCGTTCCCACTGCTTCTCCTTGAATGGTTAGGTCTGAATCCCGCAACGGAGCTTCCAAAAAATTTCTTTCCGAG
TTAATTTTCTCAGTTTTATTAACCCGGGCGGCTCTTTATTATTGCTTTAAATTTGTAGTTCTTGTTTCAAGTTAAAATTT
TTAATTCTCTATTATTTTTATTATATTGATGCTTTATCACATTGCCTTTTATGATGTAATTCATAGACCATACATAGTGG
AATCCTATATCTTATTTATTTCCTATTCCTTCTTTCTATCATCCCTCCCTTTATCCACATCCCTTTAGTTTTGCTTCACA
ACCTAGAATCCCTTTTCTTTTTTAGAGAAAAAATTGCAGTTGCTACAACTATATGACACATCTACTCATTTATGATAGAG
GTATTTATTCATATAGTGACTGTTTCTTAGTTAGGATCTCGACAATACGAAGCAATAGGTTGGTTATTAGTTAATTTTCT
ATAATTACTAAGTTTTTTTCTTAAAAAAAAGAAAAAAATAACGAGTCACACACTAAGCATAGCAATTATATTAAATGATT
TATCAATTTTCATTAAATCTTATAGAAAGAGGTATAATTTCTTCTTTTGCAGGGATTTCAGGAAAAAAGTCTCTTGTCAT
TTTTGATTCTATCAATGGACAGAATCCGAAGACAAGATTACTTATTCTTCGTCTACGAATATCCAAATTTTTACACCTAA
TACTCCATAGATAGTCCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACCCTTTT
TAATGGATTCGGCGCGTGCAATTTCTTTTCCTCCGAGACGACCCGCAATTTTTACTTTTACTCCCCTTATATCTGCTTTT
TTAGTTAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------------------------------------------------------------
-S----S-----------------------------S----------------------------------S--------
-----------------SS-------------------------------------------------------------
---------------------------S----------------------------------------------------
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-----------------------------------------------------S--------------------------
---------------------------------S----------------------------------------------
----------------S----------S----------------------------------------------------
-------------------------------------------------SSSSSS-----------------S--S-S-S
SSS-------S------------------------------SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------SS-------------------------------
---------------S------S-S-------------------------------------------------------
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-------------S-------------------S-----S-S------S------------------------S-S--S-
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>forward_290
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------------------------------CATGGTTTGGCCCAACACTG------------------------------
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>reverse_1862
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---------------------ATACTCCCTCCGTCCGGAAA---------------------------------------
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--------
