>input_sequence_75345
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-----------------------------------------------ATGGAGACTCTGGTCATCTCGCAGCAGCGCAG-
-----CCACCACCACCACCACCACTCAGGTCGCCGGAGGAAGCCATCCCCGCACACCTCGTCGCCTCAGCCCATGCGTGG
CTACCACGCCTTCAACTGCCGTGCCTTCCACTCCAGTATCAGCATAGGCATCCTGCCGTCCCCGCCCCCACCACCTCCCC
CGCCTGCACCCCGGGCTCGGACCTACTCCCCGGAGCCCAAGACGCCCAAGCAGCAGCTGCACAATGACAAAAAGCGCAGC
CGGGCGATCCCTATAACTCCATCAGGATCTCCTCCTTCCCGTCCTGAGCTTTGGGCTGGCCCGGCATACTCCAACTCGCC
GCCACCCAGCTCGCTGCCGATTCCCAAGTTCTCGCTCCACCAGAAGCGCAGTGTATCACTTGAGTTGCCACCTGCTGATA
GGCCAGAGCATGTGGAGGTGCTTGTGCATGCCAAGTCTGCACCTTCGACACCCACTGCTGGCTCAGGATTTGGCTTCTTT
GGTGACAATGATACTGCCATTGCCACGGAGAATCTGAGGAGGATCCTTAATTTGGAAATCACCGAGGACTGA--------
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>chr4A_1_TraesCS4A01G029600
TTAAGCACATGGATAGAGTAAGCACTACATTGTGGAATGGAGGGAGTAACAAATTCTTTTGTCACGCCGGCCACGACCCC
TCACCATGCGTCGCCCGCATCGCCGTCCATCCACACAGACCCAGGATCCAACGGCCGGGAGGCCCT-----CCAAGCCCC
CAGTACACGTCGAAGGGCTTTCAATTCACGGGGGCGGACCAGCGCACGGGCTCCCCGTCCTCGGAACCGAGGCGTCCGCT
ATCAAATCCGGCTTTGCGCCGTCCGTTCCGACTTTCAAGTCCGGCGTGGCGTCGTAGCTCATCATAGAGCAGTTGCTGGC
TTCCCTTCCACACCCCACTCCACCCCCCCACCCCAC------------------CCCACCTAATCGCCCCCCTCCCTCCC
C-------------------------------------------------------------------------------
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-------------------------------------------------------TCTCGCGAGGCGCACAGATCTCGCC
TCGCCTCCACCAGCAGCCGCAGCGGCTGCCAGATCCGT------------------------------------------
----------------------------CCGCCCGGCCGCCTCGCGAGGTTCCATCCGCCGATTCCCCGCATACGCTTCC
CTCGCCGCCGGCCGGTGGCTCGTCTGATCGGTGAGTCGCGGAATGCCGCTTCGTGCTCGTGAGTTGTTCGCGACGGTTTT
TGCCGT---GCGGTTTTATTTGATCGATGGCTGTGGGGTTCGTGGATGCAGGAGCGTGCGTGCGCTCGCGTC--AGAAGC
GGTTAGGGACGGAGGAGAGAAGCGCGGAGTCGATCTGAGAGGGAGGGGCGAACCCCTTCGCGCTCCTGTGGGTTTCGATC
TGTTCGTCGGGTGTAGATCCGGAAGGTATCGATCCATCTGTCCCCTGTAGATCCACGATTCTGCTAATATCTCCCATGTA
TGTTGTGGTTTGCGGATTTGTACAGTGAAAGTTTACTTTTACGTATGATTGTTTCCATCAAAGTCGATGTTTTTGTTAAG
TTTTCAGTGCCGCTAGTGTTGTGATCAA---------------AATGCCATGTTCAGATGTACTGATGCGCGTTTCATTT
GCCTGGCACCAGGGCTTGGTTGGATCTGCCACTTACGACCGGGCGCCATGGAGACTCTGGTCATCTCGCAGCAGCGCAG-
-----CCACCACCACCACCACCACTCAGGTCGCCGGAGGAAGCCATCCCCGCACACCTCGTCGCCTCAGCCCATGCGTGG
CTACCACGCCTTCAACTGCCGTGCCTTCCACTCCAGTATCAGCATAGGCATCCTGCCGTCCCCGCCCCCACCACCTCCCC
CGCCTGCACCCCGGGCTCGGACCTACTCCCCGGAGCCCAAGACGCCCAAGCAGCAGCTGCACAATGACAAAAAGCGCAGC
CGGGCGATCCCTATAACTCCATCAGGATCTCCTCCTTCCCGTCCTGAGCTTTGGGCTGGCCCGGCATACTCCAACTCGCC
GCCACCCAGCTCGCTGCCGATTCCCAAGTTCTCGCTCCACCAGAAGCGCAGTGTATCACTTGAGTTGCCACCTGCTGATA
GGCCAGAGCATGTGGAGGTGCTTGTGCATGCCAAGTCTGCACCTTCGACACCCACTGCTGGCTCAGGATTTGGCTTCTTT
GGTGACAATGATACTGCCATTGCCACGGAGAATCTGAGGAGGATCCTTAATTTGGAAATCACCGAGGACTGAATGATG-G
GGGCATCACAGTGTACATAGGTCATCAGCAACTAACCTTGGGTACTTTGTATAAAGTAACTTAGTATAGCAGCCTTCCAC
CTAGATTCTGCATCAACAGGAGTACTGTTAGGTGTGTTAGTAAGCACATCATGACTCGCGGGAAGCTGCCGTGAAGGATG
TGGTTGTGGTGGAGACTGTTGGGGTGGATGAGAGCACAGCAGTTTTAGAGTCACCTTGTAGCTTGTGGTCACCTATAGGG
TTCCAACTTTCTTTAGGTGTTAGATCTTCATTTCCATCCATGGTCAGTGATCCATTAGTGGTTGGTAGTCTGCATGATCC
TAGCTAGTAGGAAACTGCATCAGGCAGGGGTAGGGTAATAAGTTCTGTTCTACTGTTAGATAGCTAGAGTTTACACTCCA
GCATCTGTTCCCATCTTATATTCTGTAGGATATCTGCATATTATATTCTTCTGATACATACATTCTTCCTCGCCATCTTG
ACACTCCTCTAATCACACCGACTTCCCTGGTGCTCTGCAAAGAACACAAGGATCTCTCCTCACTGGCTCTTCTGTATTTT
TTGGAATGAAGAGGCCAGTGGAGGTTCAAGAAGCCCCCCTTCGATGCCCTTTCTCCCTCATCTGTCAACTAACTTTTATC
TCCGCACCTCCCCTCCCACCTTAGTTTGTTGCATATGTAGCATGTCAGATCCCCTCCCCTGCCATCCAATCTTCGTTCCA
TGCATATAATCTAAAGTTCCATCCAGTGGCACCCTGTGTAGTTTCTGTTACTTGTTCATGTTCATGGAACATGTGGAGGA
TTCGAGTTCCGTTGGCATGTTTGATAAAGGATGCGAGATTCCATTTCAGAGACCTGCGAGCGGACAAACCATAATACGGT
AATTATACGTGTGCTGCTTGTTTAATCTTATTACATCTGTTGACTTCTGTGGCTAATACTAAAGTGATTCCTGTGCTGTG
GTGCTGCAGGTTGGCTTATCCAGTGCACTTCAT
>chr4D_57
TTTTAG-------------------------------------------------------TCACACCGGCCACGACCCC
-CACCACGCGTCGCCCGCAACACCGTCCATCCACACAGACCCAAGATCCAACGGCCGGGAGCCCCCCCACCCCAAGCCCC
CAGTACACGTCGAAGAGCTATCAATTCAC-GGGGCGGAGCAGCGCACGGGCTCCTCGTCCTCGGAACCGAGGCGTCCGCT
ATCAAATCCGGCTTTGCGCCGTCCGTTCCGACTTTCAAGTCCGGCGTGGCGT---AGCTCATCATAGAGCAGTTGCTGCC
TCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCGCGAGGCGCACAGATCTCGCC
TCGCCTCCACCAGCAGCCGCAGCGGCAGCCAGATCCGT------------------------------------------
----------------------------CCGCCAGGCCGCCTCGCGAGGTTCCATCCGCCGATCCCCCTCGACCCT----
CTCGCCGCCGGCCGGTGGCTCGTCTGATCGGTGAGTCGCGGAATGCCGCTCCGTGCTCGTGAGTTGTTCGCGACGGTTTT
CGCCGT---GCGGTTTTGTTTGATCGATGGCGGTGGGGTTCGTGGATGCAGGAACGTGCGTGCGCTCGCGTCGCAGAAGC
GGTTAGGGACGGAGGAGAGAAGCGCGGAGTCGATCTGAGAGGGAGGGGCGAACCCCTTTGCGCTCCTGTGGGTTTCGATC
TGTTCATCGGGTGTAGATCCGGAAGGTATCCGTCTATCCGTCTTCTGTAGATCCACGATTCTGCTAATATCTCGTCTGTA
TGGTGTGGTTTGCAATTTTGCACAGTGAAAGCGTAGTTTCGCGTATGATTGTTTCCATCAAAGTCGATGTTTTTGTTAAG
TTTCCAGTGCCGCTAGTGTTGTGATCAA---------------AATGGCATGTTCAGATGTTCTGATGCGCGTTTCATTT
GCCTGGCACCAGGGCTTGGTTCGATCTGCAACTTACGACTGGGCGCCATGGAGACTCTGGTCATCTCACAGCATCGCAGC
CACCACC------ACCACCACCACTCTGGTCGCCGGAGGAAGCCATCCCCGCACACCTCATCGCCTCAGCCCATGCGTGG
CTACCACGCATTCAACTGCCGTGCCTTCCACTCCAGTATCAGCATCGGCATCCTGCCGTCCCCGCCCCCACCCCCACCCC
CGCCTGCCCCCCGGGCTCGGACCTACTCCCCGGAGCCCAAGACGCCCAAGCAGCAGCTGCACAATGGCAAAAAGCGCAGC
CGGGCGATCCCTATAACTCCATCAGGATCTCCTCCTTCCCGTCCTGAGCTTTGGGCTGGCCCGGCATACTCCAACTCGCC
GCCACCCAGCTCGCTGCCGATTCCCAAGTTCTCGCTCCACCAGAAGCGCAGTGTCTCACTTGAGTTGCCACCTGCTGATA
GGCTAGAGCATGTGGAGGTGCTTGTGCATGCCAAGTCTGCACCTTCGACACCCACTGCTGGCTCAGGATTTGGCTTCTTT
GGTGACAATGATACTGCCATTGCCACAGAGAATCTGAGGAGGATCCTTAATTTGGAAATCACCGAGGACTGAATGATGGG
GGGCATCACCGTGTACATAGGTCATCAGCAACTAACCTTCGGTACTTTGTATAAAGTAACTTAGAATAGCAGCTTTCCAC
CTAGATTCTGCATCAACAGGAGTGCTGTTAGGTGTGTTAGCAAGCACATCATGACTCGCGGGAAGCTGCCGTGAAGGATG
TGGTGGTGGTGGAGACTGTTGCGGTGGATGAGAGCACAGCAGTTTCAGAGTCACCTTGTAGCTTGTGGTCACCTATAGGG
TTCCAACTTTCTTTAGGTGTTAGATCTTCATTTCCATCCATGGTCAGTGATCCATTAGTGGTTGGTAGTCTGCATGATCC
TAGCTAGTAGGAAACTACATCAGGCAGGGGTAGGGTAATAAGTTCTGTTCTACTGTTAGATAACTAGAGTTTACGCTCCA
GCATCTGTTCCCATCTTATATTCTGTAGGATATCTGCATATTATATTCTTCTGATACATACATTCTGCCTCGCCATCTTG
ACACTCCTCTAATCACACCGACTTCCCTAGTGCTCTGCAAAGAACACAAGGATCTCTCCTCACTGGCTCTTCTGTATTTT
TTGGAATGAAGAGGCCAGTGGAGGTTCAAGAAGCCCCC-TTCGATGCCCTTTCTCCCTCATCTGTCAACTAACTTTTATC
CGCGCACCTCCCCTCCCACCTTAGTTTGTTGCACATGTAGCATGTCAGATCCCCTCCCCTGCCATCCAATCTTCATTCCA
TGCATATAATCTAAAGTTCTATCCAGTGGCACCCTGTGTAGTTCCTGGTCCTTGTTCATGTTCATGGAACATGTGGAGGA
TTCGAGTTCCGTTGGCATGTTTGATAAAGGATGCGAGATACCATTTCAGAGACCTGCGAGCGGACAAACCATAATACGGT
AATTATATGTGTGCTGCTAGTTTAATCTTGTTACATCTGTTGATTTCTGTGGCTAATACTAAAGTGATCCCTGTGCTGTG
GTGCTGCAGGTTGGCTTCTCCAGTGCACTTCAT
>chr4B_98
CAT-----------------------------------------------------------------------------
--------------------CACCGCCCATCCACACAGACCCAAGATCCAACGACCGGGAGGCCCCC-------AGGCCC
CAGTACACGTGGAAGAGCTTTCAATTCAC-GGGGCGGAGCAGCGCACGGGCTCCTCGTCCTCGGAACCGAGGCGTCCGCT
ATCAAATCCGCCTTTGCGCCGTCCGTTCCGACTTTCAAGTCCGGCGTGGCGT---AGCTCATCATAGAGCAGTTGCTGCC
TCCCCTTCAACACCCCACTCCACCCCCCACCCCCACCCCCTCCGCTCCCACCCACCCACCCAATCGCCCCCCTCCATCCC
C-------------------------------------------------------------------------------
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-------------------------------------------------------TCTCGCGAGGCACACAGATCTCGCC
TCGCCTCCACCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCCGGCCGCCCCGCGAGGGTCCATCCGCCGATCCCCCTCGACCCT----
CTCGCCGCCGGCCGGTGTCTCGTCTGATCGGTGAGTCGCGGAATGCTGCTCCGTGCTCGTGAGTATGTAGTTCCCAGGAT
TTCTGTTAGGCGGTTTGGTTTGATCGATCGCGATGGGGTTCGTGGATGCAGGAGCGTGCGTGCGCTCGCGTGCGGCG-GC
GGTTAGGGACGGCGGAGACAAGCGCGGAGTCGATCTGAGAGGGAGGGGCGAACCCCTTCGCGCTCCTGTGGGTTTCGATC
TGTTCGTCGGGTGTAGATCCGGAAGGTATCGATCCATCTGTCCTCTGTAGATCCACGATTCTGCTAATATCTGCTATCTA
TGTTGTGGTTTGCGATTTTGCACAGTGAAAGCGTAGTTTTGCGCATGATTGTTTCCATCAAAGTCGATGTTTTTGTTAAG
TTTTCAGTGCCGCTAGTGTTGTGATCAATAGTGCTGTGATCAAAATGGCATGTTCAGATGTTCTGATGTGCGTTTCATTT
GCCTGGCACCAGGGCTTGGTTCGATCTGCCACTTACGACTTGGCGCCATGGAGACTCTGGTCATCTCGCAGCAGCGCAG-
-----CC------ACCACCACCACTCTGGTCGCCGGAGGAAGCCATCCCCGCACACCTCGTCGCCTCAGCCCATGCGTGG
CTACCACGCCTTCAACTGCCGTGCCTTCCACTCCAGTATCAGCATCGGCATCCTGCCGTCCCCGCCCCCACCCCCACCTC
CGCCTGCCCCCCGGGCTCGGACCTACTCCCCGGAGCCCAAGACGCCCAAGCAGCAGCTGCACAATGGCAAAAAGCGCAGC
AGGGCGATTCCTATAACTCCATCAGGATCTCCTCCTTCCCGTCCCGAGCTTTGGGCTGGCCCGGCATACTCCAATTCGCC
GCCACCCAGCTCGCTGCCTATTCCCAAGTTCTCACTCCACCAGAAGCGCAGTGTATCGCTTGAGTTGCCACCTGCTGATA
GGCCAGAGCATGTGGAGGTGCTTGTGCATGCCAAGTCTGCACCTTCGACACCCACTGCTGGCTCAGGACTTGGCTTCTTC
GGTGACAATGATACTGCCATTGCCACGGAGAATCTGAGGAGGATCCTTAATTTGGAAATCACCGAGGACTGAATGATG-G
GGGCATCACCGTGTACATAGGTCATCAGCAACTAACCTTGGGTACTTTGTATAAAGTAACTTAGAATAGCAGCCTTCCAC
CTAGATTCTGCATCAACAGGAGTACTGTTAGGTGTGTTAGCAAGCACATCATGACTCGCGGGAAGCTGCCGTGAAGGATG
TGGTGGTGGTGGAGACTGTTGGGGTGGA-GAGAGCACAGCAGTTTCAGAGTCACCTTGTAGCTTGTGTTCACCTATAGGG
TTCCAACTTTCTTTAGGTGTTAGATCTTCATTCCCATCCATGGTCAGTGATCCATTAGTGGTTGGTAGTCTGCGTGATCC
TAGCTAGTAGGAAACTGCAGCAGGCAGGGGTAGGGTAATAAGTTCTGTTCTACTGTTAGATAACTAGAGTTTACGCTCCA
GCATCTGTTCCCATCTTATATTCTGTAGGATGTCTGCATATTATATTCTTCCGATACATACATTCTGCCTCGCCATCTTG
ACACTCCTCT---CACACCGACTTCCCTGGTGCTCTGCAAAGAACACAAGGATCTCTCCTCGCTGGCTCTTCTGTATTTT
TTGGAATGAAGAAGCCAGTGGAGGTTCAAGAAGCCCCCCTTCGATGCCCTTTCTCCCTCATCTGTCAACTGACTTTTATC
TGCACATCTCCCCTCCCACCTTAGTTTGTTGCATATGTAGCATGTCAGATCCCCTCCCCTGCCATCCAATCTTCATTCCA
TGCATATAATCTAAAGTTCCATCCAGTGGCACCTTGTGTAGATCCTCGTTCATGTTCATGTCCATGGAACATGTGGAGGG
TTTGAGTTCCGTTGGCATGTTTGATAAAGGATGCAAGATTCCATTTCAGAGACCTGCGAGCGGACAAACCATAATACGGT
AATTTTTTGTGTGCTGCTTCTTTAATCTTATTACATCTGTTGATTTCTGTGGCTAATATTAAAGTGATTCTTGTGCTGTG
GTGCTGCAGGTTGGCTTATCCAGTGCACTTCAT
>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------------
S-----S------------S-S---------------------S---------------------S--------------
---------------S-------------S--------S---------------S-------------------------
----------------------------------------------------SSS-----------------------S-
-S------S-------------------SS------------------------------S--------------S----
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--------------------------S-----------------------------------------------------
---------------------------------------------------------------S----S-SSS-SSSSSS
--------------------------------------------------S-----------------------------
-----------------S-------------S------------------------------------------------
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-------------------------------------------S------------------------------S-----
--------------SS----S----------SS--S----S---------------------------------------
-----------------------------------------------S-------------S------------------
---------------------S-----------------S----------------------------------------
-------SSSSSS-------------S-----------------------------------------------------
---------------------------------------------S--------------------------S--S----
-------S----------------------------------------------------------S-------------
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---------S------------------------------------------------------S---------------
----------------------------------------S---------------------------------------
----S----------------------------------------S----------------------------------
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--------------------------------------------------------------S-----------S-----
------------------------------------------------------------------S-------------
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-S------------------------------------------------------------------------S-----
-------------------------------------------S---S-S------------------------------
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-------S-----------------------------------S------------------------------------
---------------------------------
>forward_124
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------------------------GTCCATCCACACAGACCCAG------------------------------------
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>reverse_2387
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------------------------------------------------------------------TCCTCGCCATCTTG
ACACTC--------------------------------------------------------------------------
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