>input_sequence_75344
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------------------------------------ATGGCCAAGATCCAGCCCCTCCCCGCGGCCCCATCGCCGCC---
--------G---TCCTCCGGTGATCACCGC---------CAGGGCCAGCAGGCGTACACGGTGTGGATGAAGTCGCTGGT
GTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCTTCTTCATGGACCGTCAGGGGAACGCCCTCATCAGGATCAGGCGCAAGGGCTTCGGCATGTTCAGGAGG
TGGGAGGTCTGCCGGTGCGAG------------GA---CGAGGATGCGACGCCGTGGTTCACCGTGCGCCGAGCTGGCAA
GGGCGGGGCCGCCGTTGCGATGCACGGCGGCGCGGGGACATGCTACAAGATCGACGGGTGCTCT---GCCAGCAAGACGG
AGTACAAAGTCCGCGGCGTGGACGGCGCGGCCGTGGCGGAGGTGGCGCGGAAGCAGACGGCGGCCGGGGTGGTGCTGGGA
GAGGACGTGCTGACGCTGACGGTGGCGCCGGAAATGGATCACCTGCTCGTCCTGGGTTTGGTCGTCGTGCGTGGCCTCAT
CAACCGCTCCTTGTGA----------------------------------------------------------------
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>chr3D_1_TraesCS3D01G442300
CCCGCGAGGTCGCCCCAGATCGCCTCATCTAGTCACTTAGAACAACACGTACCGCCTAAGCGGTACTCCTTAACACACGT
GTATGGACGAGAATAATTTTGTTTCACTTTTGCCACTCTTAGCTATGATACATTGTCAAAAGCTAAGAGTGGCAAAAGTG
TCCCTCCCCGTTTGCGCTCCGGTATTGTAGTCGTCGATCTGCATATGAGCGTCCCTCCTCGTTTTATGGCAGGCCTTGCT
TTGTTTAACACTGCATCACAGTTCTCCTGTGGGCTGTTGGCAGGAAGCTACCGATTAATTAGTGGTACCTCACTCAGAAG
CACGTGCGTGCATTTTAAGTCATCGATCACTACGAACTACCGGTTGTCCAAAGAGCTGGAACCTGATTCCTTAATCCAGG
AGGATTATGAGTACAAATGCACTAGCTTATTTCGTATGAACTTGTGCCATGTGATGCTGTAAACAAAGCTGAGGGTCGCC
GGCAGCCCGACATTAGAAAATGGGGAGGACGACTGAAGAATATTGCCCCATGGTCCATAGAAAACGAGAGGAAACTAAAT
GACTGCTTAATTATATTAGGTGCAGGTACCTATCT---------------TACGTGCCTGCTTTCTTTCTGCTTGCCAAA
CACAACAATCTGTAAATAGTACGTTTCGATCATCCAATTTTAATCGCGATATCACACATGTTCAGCATTGCATTACATTA
CATTGC-----------GGTTTCAACTCTTCGATGAATCTCTAAACGTGATGCTGATCGCATGCTGACTTGTAT-ACAGT
ACAAGACGGAGCATAAACAACTAGTAATCCAGTACAGCACTAT----TCTATCCTAAGCGCGTGAGCGTGATGCACACAC
TGCCTTTAA-----CTAATCCGGCCACGGAATAAACAAAAT-GTAGTTCAAGCATCCCTCT--ATAAATAGGTGGAGCCA
ACCACTGCTCCC--ACCGTCCAAATCATCCCA------------ACATCAACAGCCGAGCAGAGCAA-------------
----TCTTCTTCTTCTTCG------ATCTCTCGGCGATGGCCAAGATCCAGCCCCTCCCCGCGGCCCCATCGCCGCC---
--------G---TCCTCCGGTGATCACCGC---------CAGGGCCAGCAGGCGTACACGGTGTGGATGAAGTCGCTGGT
GTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCTTCTTCATGGACCGTCAGGGGAACGCCCTCATCAGGATCAGGCGCAAGGGCTTCGGCATGTTCAGGAGG
TGGGAGGTCTGCCGGTGCGAG------------GA---CGAGGATGCGACGCCGTGGTTCACCGTGCGCCGAGCTGGCAA
GGGCGGGGCCGCCGTTGCGATGCACGGCGGCGCGGGGACATGCTACAAGATCGACGGGTGCTCT---GCCAGCAAGACGG
AGTACAAAGTCCGCGGCGTGGACGGCGCGGCCGTGGCGGAGGTGGCGCGGAAGCAGACGGCGGCCGGGGTGGTGCTGGGA
GAGGACGTGCTGACGCTGACGGTGGCGCCGGAAATGGATCACCTGCTCGTCCTGGGTTTGGTCGTCGTGCGTGGCCTCAT
CAACCGCTCCTTGTGA-------CCCTCTTCTTCTAGCTCAGGAACGC-----------------CGTAGATGGTGAGAG
TAGGAACGCC----------------------------------------------------------------------
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------------------GTAGGTGGTTCATGTGACCATTTTTTTCCTGACGAACAATTCAGGAAGTTTTTGCCCATGCC
----GATTGGCATGGTGATTCTTTTTGTTGTATGA--CT----TTTTTTTCCCTTTCTGAAAGGGTTTTTCGCGACCATA
GTTTCAACACAATGAAACAAGGTTATACACCGATTGTATAAATCTTTGGATGTGT--TCGATTTCCAG------------
-----GTTGTCTATGAGTTATCCTCTGTTTGTGAGAGTAGTTAGTTTAGTTGTACAATGAAACACAAATGTTAGCCTATG
AAACTCCAATATATGAATCTATGATCCCACACAGAATAAATTGAGAGGCACCCAAAATGTTTCTAAAAATCTG----AAT
TAGTCCTCGGCCTCTTGGAGAAGAGGTTGGCGCACACAAAAACGTTAGCCAGTCACTACT---CATTGGCAGACGCAGCA
AGCAGCTGT---CGCACTGAAGATGTCTCTGCGCGAAAAGAATGTTCAATAGGACACACCACAACTTCAACGCA---A--
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---------------------------------------------------------------------------AGAAG
AAAAGAGCACACATCAACATCAGCCTACCAAAATGACGTCCGTGTCACTGCCAGCCTTATTAAACTCAGTCAATTTATCG
AGGAAATCGGGGTACAAAGTGTGTACAACGAGCGGAAGACCAGTACACAGAGGCGGCGACGGAGATAGCTGTCGGCTTGA
AAAAGAGCAAGCGAGCAGCAGACCGTCTCTCTCCCTCCCTCCCAAAAGGTTGGAGTAATTCACC-GGCTGAGATGTACTC
CCTCCGTTTTAAAATATAAGTTTTTCTAAAGATTTCGATAGATGACTACATACGAAACAAAATGAGTGAATCTACACTCT
AAAATATGTCTATATACATCTGTATGTTGTAATTCATTTAAAATGTCTAAAAAGACTTATATTTCAGAACGGAGGGAGTA
CAATACATGACAAGTGGTGGCGAATATGAACTTGAGCCTATAACCGGA--------------------------------
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>chr3A_492
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-----------ATTAGAAAATGGGGATGACAACTGAAGAATATTGCCCCATTATCCATGCAAAACGAGGGGAAACTAAAT
GACTGCTTAATTATATTAGGTGCAGGTACCTATCT---------------TATGTGCCTGCTTTCTTTCTGCTTGCCAAA
CACAACAATCTGTAAATAGTACGTTTTGATCATCCAATTTTAATCGCGATAT---------------------TACATTA
CATTGC-----------GGTTTCAACTGTTGGATGAATCACTAAACGTGATGCTGATCGCATGCTGACT-GTAT-ACAGT
ACAAGACGGAGCATAAACAACTAGTAATCCAGTACAGCACTAT----TCTATCCTAAGCGCGTGAGCGTGATGCACACAC
TGCCTTTAA-----CTAATCCGGCCACGGGATAACAAACAAAGTAGTTCAGGCATCCCTCT--ATAAATAGGTGAAGCCA
ACCACTGCTCCC--ACCGTCCAAATCATCGCA------------GCATCAACAGCCTAGCAGAGCAA-------------
----TCTTCTTCTTCTTCG------ATCTCTC-GCGATGGCCAAGATCCAGCCCCTCCCCGCGGCCCCCTCACCGCC---
--------G---TCCTCCGGTGATCACCGC---------CGGGGCCAGCAGGCGTACACGGTGTGGATGAAGTCGCTGGT
CTTCAATGGCAACGGCTGCGCGGTGTACGGCCCCGATGGCAGCGTTGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCTTCTTCATGGACCGCGGCGGCAACGCCCTCATCAGGATCAGACGCAAGGGCTTCGGCATGTTCAGGAGG
TGGGAGGTCTGCCGGTATGAG------------CAGGGGGAGGAGGCGACACCGTGGTTCACCGTGCGGCGGGCCAAGAA
GGGCGAGGCCGCCGTTGCGATGCACGGCGGCGCGAGAACCTGCTACAGGATGGACGGGTGCCCT---GCCCGCAAGACGG
AGTACAAAGTCCGCGGCGTCGATGGCGCGGCCGTGGCGGAGGTGGCCCCGAAGCAGACGGCGGCGGGGGTGGTGCTGGGC
GAGGACGTGCTGACGCTGACGGTGGCGCCGGAAATGGATCACCTGCTCGCCCTGGGTATGGTCGTGGTGCGTGGCCTCAT
CAACCGCTCCTTGTGA-------CCCTCTTCTTCTAGTTCAGGTTCAGGTCTCTCTAGTTAGTAGCAACGTAGACCA---
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---------------------------------------TTTTTTTCTGACGAACAGTTCAGCAAGTTTTTTCCCATGAT
GCCAGATTGGCATGGTGACTCTTTTTGGCGTATGA--CT----TTTTTT-CCCTTTCTCAAAGGGTTTTTCACTACCATA
GTTTCAACACGATGAAACAAGGTTATACAGTGATTGTATAAATCTTTGGGAGTACTTAGTTTAGTTTGTGGGAGTACTTA
GTTTAGTTGTCTATGTGTTATCCTTAGTTTGTGGGAGTACTTAGTTTAGTTGTACAATGAAACACAAATGTTAGCCTACG
AAACTCCAATATAAGACTTTATGGTCTCAGACAGAATAAATTGAGAGGCACCAAAAATG---------------------
------CCGGCCTCTTGGAGAAGAGGCTGACACACACACAAACATTAGCCAGTCACTCACTGGCAGTGGCACACGCAGAA
AGCAGCTGT---CGCACTGAAAATGTCTCGCA-CGAAAAGAAAGTTCAATAGGGCACACCATAACTTCAACACAAAGA--
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---------------------------------------------------------------------------AGAAG
AAAAGAGCGCACATCAACATCAGCCTACCAAAACGACGTCCGTGCCACTGCCAGCCTTATTAAACTCAGCCAATTTATCG
AGGAAACCGGAGTACAAAGTGTGTACAACGAGCGAAAAACCAGTACGCAGAGACGGCGACAGAGATAGCTGCACGCTTG-
AAAAAAGCAGGCGAGCGTCAGACCGTCTATCTCCCTCCCTCTCAAAAGGTTGGAATAATTCACC-GGCTCAGATGTAC--
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>chr3B_533
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----------------------------------------------------GTCCATGGAAAACGAGAGAAAACTAAAC
GACTGCTTAATTA-ATTAGGTGCAAGTACCTATCTACCGTCCACCGCACGTACGTGCCTGCTTTCTTTTCTCAGATGCGA
TCG----------AAGTTGTACGTTTCTATTATCCATTTTCAGATGCGATCTCACACATGTTCAGCATTACGTTGCATTG
CGGTTTAATTATATACAGGTTTCAACTGTCGGATGAATCACTAGACGTGATGCTAATCGCATGCTGACT-GTAT-ACAGT
ACAAGACGGAGCATAAACAACTAGTAATCCAGTACATCACTATTCTATCTATCCTAAGCGCGTGAGCGTGATGCACATAC
TGCCTTTAA-----CTAATCCGGCAACGGAATAAATAT-----TAGTTCAAGCATCCCTCTCTATAAATAGGTGAAGCCA
ACCACTGCTTCC--ACCGTCCAAAT----------------------C---------AGCAGAGCAGAGTAGAGCAATCT
TTCTTCTTCTTCTTCTTCG------ATCTCCTGTCGATGGCCAAGATCCAGCCCCTCCTCGCAGCCCCATCGCCGCC---
--------G---TCCTCCGGTGATCACCGCCAGGGCCAGCGGGGCAGGCAGGCGTACACAGTGTGGATGAAGTCGCTGGT
CTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGAGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTTCTTCTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCGCAAGGGCTTCGGGATGTTCAGGAGG
TGGGAGGTCTGCCGGTATGAG------------GAAGGGGAGGAGGCGACGCCGTGGTTCACCGTGCGCCGGGCTGACAA
GGGCGGGGCCACCGTGGCGATGCACGGCGGCGCGGGGACGTGCTACAGGATCAACGGGTGCTCA---GCCCGCAAGACGG
AGTACAAAGTCCACGGCGTGGATGGCGCAGCCGTGGCGGAGGTGGCCCGGAAGCAGACGGGGGCGGGGGTGGTGCTGGGG
GAGGACGTGCTGACGCTGACGGTGGCGCCGGAAATGGATCACCTGCTCGCCCTGGGCTTGGTCGTCGTGCGTGGCCTCAT
CAACCGCTCCTTGTGA-------CCCTCGTCTTCTAGTTCAGGTTCAGGTCTCTGTAGGTAGCAA------TGATGAGAG
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---------------------------------------TTTTTTCCTGACGAACAATTCAGCAAGTTTTTTCCCATGCC
----GATCGGCATGGTGACTCTTTTTTGGTGTATGACCT----TTTTTC-CCCTTTCTCAAAGGGTTTTTCACGACCATA
GTCTCAACACAATGAAACAAGGTTATACAGTGATTGTATAAATCTTTGGGTGTGT--TCGATTTCCAG------------
-----GATGTCTATGTGTTATCCTCAGTTTGTGGGAGTACTTAGTTTAGTTGTACAATGAAACACAAATGTTAGCATATG
AAACTCCAATATAAGACTTTATGGTCCCACGCAGAATAAATTGAGAGGCACCAAAAATGTTTCTAGAATACTG----AAT
TAGTAGTCGGCCTCTTGGAGAAGAGGCTGACACACACAAAAACGTCAGCCAGTCACTACT---CACTGGTAGACGCAGCA
AGCAGTTGT---CACACTAAAAATG-CTCACA-CGAAAAAAAAGTTCAATAGGGCACACCACAACTTCAACGCA---A--
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AGGAG
AAAAAAAGAG-CATCAACATCAGCCTACCAAAGCAACGTCCGTGCCACTGCCAGCCTTGTTAAACTCAGTCAATTTATCG
AGGAAATAGAAGTACAAAGTGTGTACAACGAGCGGAAGACAAATACACAGAGACGGCGATGGAGATAGCTACCGGCTTGA
AAAGGAGCAAGCGAGCAGCAGACCGTCTCTCTTCCGCCCTCCCAAAAGGTTGTAATAATTCACC-GGCTGAGATGTAC--
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>chr3A_736
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-----------------------------------------TAAACGTGATGCAAATCGGATGCTGACGTAGAGCACAGT
ACTGGGTCGAGCATAAACAAGTT------CAGTGCAGCACTGT----TCTATCCAAAG-------GCGTGACGCACACAC
TACCATTAACTAAACTAATCCGGACACGGGATAACGAACAAACTAGTTCAAGCAA------CTATAAATATGTAGAACCA
GCCACTGGCTCCCAACCATCCCAATCATCGATGTCCTTCTCATCGCAACAGCAGCAGAGCAGAGCAGAGAAA--------
----------TCTTCTTCG------AACGCTCTCCAATGGCCAAGATCCAGCCTCTTCCTGCCGC-----------GGCC
TCTTCTTCTCCCTGCTCCGGAGA------------CCAGGAGGGCAGGCAGGCGTACACGGTGTGGATGAAGTCGCTGAT
CTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCTTCTTCATGGACCGTGAGGGGAACTCCCTCATCAGGATCAGGCGCAAGGGCTTCGGCATGTTCAGGAGG
TGGGAGGTCTGCCGGTGCGCCCACAACGGCGGCAAGGAGGAGGAGGCCACTCCGTGGTTCAGCGTGCGGCGGGCCGAGAA
GGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACAATCGACGGGTGCTCT---GGCAGCAAGTGGG
AGTACAGAGTACGCGGCGTGGATGGCGCGGTGGTGGCGGAGGTCGCACGGAAGCAGACGCCGGCGGGGGTGGTGCTGGGG
GACGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGAGCACCTGCTAGCTTTGGGTTTGGTCGTGGTGCGTGGCCTCAT
GAACCGCTCCATGTGA----------------------------------------------------------------
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>chr3B_934
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--------------ACCATCCCAATCATCCCACTAACTGTGCAACAGC---------AGCAGAGCAA-------------
-TCTTCTTCTTCTTCTTCG------TTCTCTCTTCAATGGCCAAGATCCAACCCCTTCCTACGGCCACCTCGTCGTC---
--------G---TCCTCCTATGATCACCGCCAGGGCCAGCGGAGCAAGCAAGCGTACACGGTGTGGATGAAGTCGCTGGT
GTTCAACGGCAACAGCTGCGCGGTGTACGGCCCCGACGGCAACGTCGCCTTCCGGGTCGACAACTATGGCTGCAGGGGCG
GCCGTGAGGTCTTCTTCATGGACCGTGCCGGCAACGCCCTCATCAGGATCAGGCGCAAGGGCTTCGGCATGTTCAGGAGA
TGGGAGGTATGCCGGTGCGTG------------CA---CCAGGAAGCGACGCCGTTGTTCACCGTGCGGTGGGCCGAGAA
GGGCGGGGCCGCAGTTGCGATGCACGGCAGCACGGGAACATGCTA-AGGATCAACGGGTGCTCT---GCCAGCAAGAGGG
AGTACAAAGTACGCGGCGTTGATGGCGCGGCCGTGGCGGAGGTGACCCGGAAGCAGACATCGACGGGGGTGGTGCTGGGG
GAGGACGTGCTGACGCTGACGGTGGCGTCGGAAATGGATCACCTGCTCACCCTGGGCTTGGTCGTTGTGCGTGGCCTCAT
CAACCGCTCCTTGTGG-------CCTTCTTCTTCTAGTTCAGTTTCAGGTCTCTGTACGTAGCAACGTAGATGATGAGAG
TAGGAACAATGTTTTAAATAGCAGGCTATGACATATAGTGGCAACCCTTAAAAACAACTATAACTGGGCTATAGCGGCAA
ATTATACATGAAATCATTTAGCAGCAACATGCTAGAACAGCTATAGCAGAGCTATAGCGGGGCTATAGCTGGCTATTTGA
AACTACGGTAGGAACGTTGTAGGTGGTTCGTGTGACCA--TTTTTTTTTACGAACAATTCAGCAAGTTTTTGCCCATGCC
A----ATTGACATGGTGACTCTTTTTGGTATATGA--CT----TTTTTT-CCCTTTCTCAAAGGGTTTTCCACCACCAGT
TGAA----------AAACAAGGTTATACAGTCATTGCATAAATCTTTGGATATGTGCTCGATTTCCAG------------
-----GTTGTCGATGTGTTATCCTCAGTTTGTGGGTTTACTTAGTTTAGCTGTACGATGAAACACAAATGTTAGCATATG
AAACTCCAATAAAAGACTTGATGGCCCCACACAGAATAAACCGAG-----------------------------------
-AGTCGCCGGCCTCTTGGACA-----CTGACACACACAAAAACATTAGTCAGTCACTGCC---CACTTGCAGATGCAGCA
AGCAGCTGT---CACATTGAAAATGTCTCGCA-TGAAAAGAAAGTTCAATCGGGCACACCACAAATTCAACGCAAAGA--
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---------------------------------------------------------------------------AGAAA
AGAAGAGCGCACATCAACATCAGCCTACCAAAACGATGTCAGTGCCACTGCCAGCCTTATTAAATTCAGTCAATTTATCG
AGGAAACCAGAGTACAAAGTGTGTACAATGAGTGGAAGACCATTACGCAGAGACGGTGATGGAGATAGCTGCCGGCTTGA
AAAAGAGCAGGCGAGCAGCAGACGGTCTCTCTCCCTCCCTCCCAAAAGGTTGGAATAATTCACC-AGCTGAGATGTA---
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---TACGTGACGAGTGGTGGACAATATGAACTTGAGCCTATAACATGAGAAAAAGAAAAACTGCAAATCCCCATGCTCGA
TTGCATGAACTACACTTATTTATGTATGCTACTTTTAAAGACAACTTTTCTTTCCTTCATCCTATCAGAGTGTTTAGAAG
TTATTACATATGTTGTCAAATCTAATATTGTACTCCCTCTATCCCAGAATGTAGCCCCGTTGTGCGCAGTTGTAACCAAA
AGGCGGGCATTATATACTCTTATACAAAAGATTAGTTTGTAAGAATTGCATGATTAATTGTTTCCTTCAAAATTACATGA
TAAATTCAATGCAGGACACATGGACTTCACCATGTTAGGTGTCTAGTGTAACAAATTCGATTGTTGTATTGTACCTAGCT
CCGCCTATGTTAGCACTATCACTAACTTTTGAAACAATTGCGAGCCTTGGTGCAATACACCGGTAAAATGTCAATGCTTG
AAAATGACATGACTGCTTTCCTTCAGGGAAAAATGGCATGACTGTTGCATGGAGAACTTAAAATACTTTATTGAGCAATA
TTCTTGCTGCCTCACACATTAAAAAGTGTTTACTCGTCAACTCGTGTAAACAACAACATTACATGAAAGTCCAATGCTTT
ACAATCTCGCTGGTCCCAAGGAAAATTTTCTCTGACTAGCACTAGCATCCACATATACTAACACATGCGCAAAGAGGACG
GAAGTGAGTGGGAACATGTGGCTGCAGGCCCAACTTGGTCTGTATGGAAACTTTTGTGGCGAAAAGGACTTGAGTGAGGA
AATTCAGCACTAACTAAGAAAAAGGGAAAAAGAAATGGAAGGCACTTGGACATACGCTCCGCTGACTCCCTTTGGCTCTC
GAGCACCACGTATCTTACTGACAATAAAAAAAATCATTTCCAAAAATGTATAAATGAAAACAAACCAACTGTTCAAAGTA
TCCATACATGAGTTCAACCATTAAATTTTCATATCCAAATTCAGACATGTATGACATGTGCAAAACTAACAACTCCGGCC
CTGCTATTCAAAATTTGAATCCGCCATTATTTATCTATTTTGCAGGGAGAATCAAAATGTTATTTGTACTAGGGGTCAAG
AGAACGGTTTAGATGAAGGTCCTTGACTACAATGGGCCGCCCCTAAAATGTGTTCTCCCTTTTATCTTGTTTTAATTTCC
ACGATGTGACGTGGACATCACACACGTGTGTGTATCTACTAAGCTCCCGGAGCCTTTCTTTCTAGTGTCAAAAAACGTTC
TTATATTTTGGGACAGAGGGAGTAGAAAATATGTGCAATACCCGTTCTTAAACTGAGGCTTCCTCTCTGCCTGTCGTACT
GGCTAGCTAGCTAGTTGAGCTGCTCCACACGTAGACAACTCGTACCATACCATAAACGCGCAAAGAAAGAAAGAACTGAG
TTATCCATCGTCCACACGTCGAGGCTCGATCAGTTTTACGTACAATATTATATGGTAGGTATCATGTGTACACATGGATT
TTGCGCTCTCGAAAGGATAATATGGAGATCACTACTGATTCCTCAGAAGTCATCTCCCGTTGCGACGATATAGTTTACGC
TGCAATATTAGCAGAGTTGTACTCCTAGTAGCTGGTCTGAACAAACTTCCCTCCCAACCTCCCAGTTTTATGCTAGGTCT
TGCTTTGTTTTACACAGCAGCATTGTCCTTGTGAGTTGTGAGTTGGAAGCTAATTAATCAGTCGATCTTCTGTCAGAGCT
GGAGGCGGATTTCATTAATCCAGCAAGAGCATGAGTAAAATCAAAATCACAGCTTCTTATTCTCATGCAGTTATGCTTTC
TGCAACCAAAAAAAAGAATTAAAAAAATCTTATTCAGTTCTGCAATGTGCGTATATAAAGTAATAATGTTGTAAACAAAA
CAAAGTTGAGGGCCTGACATGACACAAGGGGGGACACAATGACTCAAGTTTGTCGCCCCACGGTCATGAACACTTCACGG
AAAACGAGAGAAAACCGAACTGGCCCGACTGCTTAATTAATTGATTAGGCGCAAGTACTTATCCTTTCTTCAGGCAGCTA
ACGTACATGGCTACATGTCTGCTTTCTTTCTACTCGCCAAAGCAGAACAAATCTATTTTCTGACAAGGGGTCGACATAGT
ACGTCTCGATCATCCATTTTTAAACTTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACA
CACACACACACACACACACACACACACACATGTTCAGCATTGCATTACATCTAGGTTTAATTATATATCCATGTCTCAAC
TCTTGGATGAATCACTAATCGTGGTGCTAATCGCATGCTGACTGGGAGTAGATGGAGCATAAACAACTAATCGAGTGCAG
CACTATTCTATCCCAACGTGTGACGCTCACAGTGCCATAAACTAATCAAGACACGGGAATAACGAACGAAGTAGTCCACT
TCAGAGCACGTCCTGAATAAATAGGCCAAACAGCAGCAGCAGAGCCGAGCCGAGCCGAGCAGAGCAGAGCAATCTTCTTC
TTCCATCTCTCCTCTCTCCTCTCTCCTCAATGGCCAAGATCCAGCCCCTTCCTTCGTCTTCCTGCTCCACCTCTTCCTCC
GGAGATCACCACCAGAACCGTCAAGCGTACACGGTGTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTGTA
CGGCCCCGACGGCGCCGTCGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCG
CCGGCAACGCCCTCATCAGGATCAGGCGCAAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGGTGCGCCCACAAC
GGCCACGAGGACGAGGAAGCGACGCCGTGGTTCAGCGTGCGACGGGCCGAGAAGGGCGGAGCCGCCGTGACGATGCACGG
CGGCGCGAGGACGTGCTACAGGATCGCCGGGTGCTCCGGCGCGCGCAAGCCCGAGTACACAGTCCGCGGCGTCGATGGCG
CGGCCGTGGCAGAGGTGGCGCGGAAGCAGACGGCGGCGGGGGTGGTGCTAGGGGAGGACGTGCTGACGCTGACGGTGGCG
CCGGAGGTGGATCAGCTGCTCGTCCTGGGCTTGGTCGTAGTGCGTGGCCTCATCAACCGCTCCTTGTGA
>chr3D_960
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----------------------------------------------------AGCCGAGCAGAGCAA-------------
----TCTTCTTCTTCTTCG------TTCTCTCTTCAATGGCCAAGATCCAGCCCCTCCCTGCGCCCCCCTCGCCGTC---
--------G---TCCTCCGATGATCACCTCCAGGGCCAGCGGGCCAGGCAGGCATACACGGTGTGGATGAAGTCGCTGGT
GTTCAACGGCAACGGCTGCGCGGTCTACGGCCCCGACGGCAGCGTCGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCCTCCTCATGGACCGCGCCGGCAACGCCCTCATCAGGTTCAGGCGCAAGGGCTTCGGCATGTTCAGGAGA
TGGGAGGTCTGCCGGTATGAG------------GAGGGGGAGGAGGCGACGGCGTGGTTCAGCGTTCGGCGGGCCAAGAA
GGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCAGCGACCTGCTACAGGATCGACGGGGGCTGT---GCGCGCAAGCCTG
AGTACAGAGTGAGCGGTGTAGATGGCTCGGTCGTGGCGGAGGTGGCGCGGAAGCAGACGGCGGCGGGGGTGGTGCTGGGG
GAGGACGTGCTGACGCTGACGGTGGCGCCGGAAATGGATCAGCTGCTCGCCCTGGGCTTGGTCGTCGTGCGTGGCCTCAT
CAACCGCTCCTTGTGAGTTGTGACCCTCTTCTTCTAGTTCAGGTTCAGGTCTCTGTAGGAAGCAAC-------------G
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---------------------------------------TTTTTTTCTGACGAACAATTCATCAAGTTTTTTCCCATGCC
----GATTGGCATGGTGACTCTTTTTGGTGTATGA--CT----TTTC-C-CCCTTTCTCAAAGGGTTTTTCACGACCATA
GTTTCAACACAATGAAACAAGGTTACACGGTGATTGTATAAATCTTTGGATGTGT--TCGGTTTCCAG------------
-----GTTGTCTATGTGTTATCCTCAGTTTGTGGGAGTACTTAGTTTAGTTGTACAATGAAACACAAATGTTAGCCTATG
AGACTCCAATTTAAGACTTTATGATCCCACACAGAATAAATTGAGAGGCATCAAAAATGTTTCTACA-------------
------TCGGCCTCTTGGAGAAGAGGCTGATACACACAAAAACGTTAGCCAGTCACTACT---CACTGGCATACACAGCA
AGCAGCAGTTATCGCACTGAGAATGGCTAGCACGAAGAAGAAAGTTGAGTTGGGCACACCACAACTTCAACGCAAAGA--
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AGAAA
GAAAGAGCGCGCGTCAACATCAGCCTACCAAAACGACGTCTGTGCCACTGCCAGCCTTATTAAACTCAGTCAATTTATCG
AGGAAACCGGAGTACAAAGTGTGTACAACAAGCGGAAGACCAGTACGCATAGGCGGCGACGGAGATAGCTGCCGGCTTGA
AAAAGAGCAGGCGAGCAGCAGACCGTCTCTCTCCCTCCCTCCCAAAAGGTTGCAATAATTCACGGGGCTGAGATGTAC--
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>chr3D_960
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----------------------------------------------------AGCAGAGCAGAGCAA-------------
----TATTCTTCTTCTTCTTCTTCATTCTCTCTTCAATGGCCAAGATCCAGCCCCTGCCTGCGCCCCCCTCGCCGTC---
--------G---TCCTCCGATGATCACCGC---------CAGGGCCAGCAGGCGTACACGGTATGGATGAAGTCGCTGGT
CTTCAACGGCAACGGCTGCGCGGTGTACGACAGCGACGGCGCCGTCACCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCCTCCTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGACGCAAGGGCTTCGGCATGTTCAGGAGG
TGGGACGTCTGCCGGTGCGAA---------------GACGAGGAGGCGACGCCGTGGTTCACCGTGCGGCGGGCCGAGAA
GGGCGGGGCCGCCGTGGTGATGCACGGCGGCGCAGCCACCTGCTACAGGATCGACAGGTGCT---GCGCACGCAAGCCCG
ACTACAAAGTGAGCGGCGTGGACGGCGCGGCCGTGGCGGACGTCGCGCGGAAGCAGACGGCGGCCGGAGTGGTGCTCGGG
GAGGACGTGCTGACGCTGACGGTGGCGGCCGAGGCGGATCACCTGCTCGTCCTGGGCTTGGTCGTGGTGCGTGGCCTCAT
CAACCGCTCCTTGTGA----------------------------------------------------------------
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>chr3A_960
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----------------------------------------------------AGCCGAGCAGAGCAA-------------
----TCTTCTTCTTCTTCG------TTCTCTCTTCAATGGCCAAGATCCAGCCC-TCCCTGCGGCCACCTCGCCGTC---
--------G---TCCTCCGATGATCAGCGG---------CAGGGCCAGCAGGCGTACACGGTGTGGATGAAGTCGCTGGT
GTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCAGTCACCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCCTCCTCATGGACCGCGCCGGCAACGCCCTCATCACGATCAGGCGCAAGGGCTTCGGCATGTTCAAGAGG
TGGGAGGTCCGCCGGTGCGCCCACAACGGCCACCAGGACGAGGAAGCGACGCCGTGGTTCAGCGTGCGGCGGGCCGAGAA
GGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCGAGGACGTGCTACAGGATCGACGGGTGCTCCGGCGCGCGCAAGCCCG
AGTACAGAGTCCGCGGCGTGGATGGCTCGGTCATGGCGGAGGTGGCGCGGAAGCAGACGTCGGCCGGGGTGGTGCTGGGG
GAGGACGTGCTGACGCTTACGGTGGCGCCGGAGGTGGATCACCTGCTCGCCCTGGGCTTGGTCGTCGTGCGTGGCCTCAT
CAACCGCTCCTTGTGA----------------------------------------------------------------
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>chr3A_960
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----------------------------------------------------AGCCGAGCAGAGCAA-------------
----TCTTCTTCTTCTTCG------TTCTCTCTTCAATGGCCAAGATCCAGCCCCTCCCTGCGGC-----------C---
--------G---TCCTCCGATGATCACTGGCAGGGCCAGCGGGGCAAGCAGGCGTACACGGTGTGGATGAAGTCGTTGGT
CTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGATGGCAGCGTTGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCTTCTTCATGGACCGCGGCGGCAACGCCCTCATCAGGATCAGACGCAAGGGCTTCGGCATGTTCAGGAGG
TGGGAGGTCTGCCGGTATGAG------------CAGGGGGAGGAGGCGACACCGTGGTTCACCGTGCGGCGGGCCAAGAA
GGGCGAGGCCGCCGTTGCGATGCACGGCGGCGCGAGGACCTGCTACAGGATGGACGGGTGCCCT---GCCCGCAAGACGG
AGTACAAAGTCCGCGGCGTCGATGGCGCGGCCGTGGCGGAGGTGGCCCCGAAGCAGACGGCGGCGGGGGTGGTGCTGGGC
GAGGACGTGCTGACGCTGACGGTGGCGCCGGAAATGGATCACCTGCTCGCCCTGGGTATGGTCGTGGTGCGTGGCCTCAT
CAACCGCTCCTTGTGA-------CCCTCTTCTTCTAGTTCAGGTTCAGGTCTCTGAGA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GTAGGAACGCTGTAGGTGGTTCATGTGACCA--TTTTTTCTGACGAACAATTCAGAAGTTTTTGCCCAGAATG
AG------GACATGATTGCTCTTTTTGGTGTATGCTCGACTACTTTTTT-CCCTTTCTCAAAGGTTATTTCACGACCATA
GTTTCAACAC-------------------------------ATCTTTGGATGTGT--TCGATTTCCAG------------
-----GTTATCCGTGTGTTATCCTCAGTTTGTGGGAGTTCTTAGTTTAGTTGTACAATGAAACACAAATGTTAGCATATG
AAACTCCAATGTAAGACTTTATGATCCCACACGGAATAAATGGAGAGGCATAAAAAATGTTTCTAGAATACAGAATAAAT
TAGTCGTCGGCCTCTTGGAGAAGAGGCTAACACACACAAAAACGTTAGCCAGTCACTGTT---CACTGGCAGACGCAACA
AGCAGCTAT---CGCACTGAAAATGCCTTTCA-CAAAAAGAAAGTTCAATAGGGCACACCACAACTTCAACGCAAAAAGC
AGATTAAGGCATAGCCTAGTGGTGGGAAGGGGTTGATGCCTTCCCACCCACCCAGGTTCAAGGCATGGTACTTGCAATTT
GGGGTTGTTGCACCAATATACCGTAGGGGGTTCCCTTACAGTCTTTTTATTAAAAAAAAAACTTCAACGCAAAAGAGAAA
AAAAGAGCGCACATCAACATCAGCCTACCAAAACCATGTTCGTGCCACTGCCAGCCTTACTAAACTCAGTCATTTTTTCA
AGGAAACCGGAGTACAAAGTGTGTACAATGAGCGGAAGACCACTACGCAGAGACGGCGACGAAGATAGCTGTCGGCTTGA
AAAAGAGCAGGCGAGCAGCAGCCCGTCTCTCTCCCTCCCTCCCAAAAGGTTGCAATAATTTAC-----------------
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>chr3A_991
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--------------------------TCTCTCGTCCATGGCCAAGATCCAGCCCCTTGCTGCCGC-----------CGCC
TCACCGTCG---TCCTCCGGAGT------------TCAACAGGGCAGGCAGGCGTACACGGTGTGGATGAAGTCGCTGGT
CTTCAACGGCAACGGCTGCACGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCGCGAGGTCTTCTTCATGGACCGTGAGGGGAACTCCCTCATCAGGATCAGGCGCAAGGGCTTCGGCATGTTCAGGAGG
TGGGAGGTCTGTCGGTGCGCCCACAACGGCGGCCAGGAGGAGGAGGCCACGCCGTGGTTCAGCGTGCGGCGGGCCGAGAA
GGGCGGAGCCGCCGTGGCGATGCACGGCGGCACGGGGACGTGCTACACGATCGACGGGTGCTCT---GCCCGCAAGTCGG
AGTACAGGGTACGCGGCGTGGATGGCGCGGTGGTGGCAGAGGTCGCACGGAAGCAGACGCCGGCGGGGGTGGTGCTGGGG
GACGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGATCACCTGCTCTTCCTGGGCTTGGTCGTCGTGCGTGGCCTCAT
CAACCGCTCCTTGTGA----------------------------------------------------------------
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>chr3A_993
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----------------------------TCTCGACCATGGCCAAGATCCAGCCCCTTCATTCCTC-----------TCCC
TGCTCCACTTCTTCCTCCGGAGT------------TCAACCGGGCAGGCAGGCGTACACGGTGTGGATGAAGTCGCTGGT
GTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCGTCGACAACTACGGCTGCAGGGGCG
GCCACGAGGCCCTCTTCATGGACCGTCAAGGGAACGCACTCATTAGGATCAGACGCAAGGGCTTCTGGACGTTCAGGAGG
TGGGAGGTCTGCCGTTGCACCCACGACGGCAGCGAGGAGGAGGAGGCGACGCCGTGGTTCAGCGTGCGTCGTGCTAAGAA
GGGCGGGGCCGTCGTGGCGATGCACGGTGGCGCAAGGACGTGCTACAGGATGGACGGGTGCTCCGGCGCGCGCAAGCCCG
AGTACAGAGTCCGCGGCGTGGATGGCTCGGTCGTGGCGGAGGTGGCGCGGAAGCAGACGTCGGCGGGGGTGGTGCTGGGG
GAGGACGTGCTGACGCTCACGGTGGCGCAGGAAATGGATCACCTGCTCGTCCTGGGCTTGGTCGTCGTGCGTGGTCTCAT
CAACCGCTCCTTGTGA----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------S---S--------------------S------S---------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S-S--------
---------------------------S--S--------S----------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--S-S---------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S--------------------------S----S---
-----------------------------------------------S--------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
-------------------------------------S-----SS-SS-------------------------S------
-------SSS----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------S-----------------
------------------S--------S---------------------S--------S------------S--------
-----------------------------SS-------------------------------------------------
---------------S---------S-------S-----S----------------------------------------
-------------S--S-S---------------------------------S------------S--SS----------
-----S--------------------S--S-S---------------------------------S--------------
---------------------S--------SSS---------S----------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------S-----------------------------------
----------S---------------------------------------------------------------------
------------------------------------------------------S-----------------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---S----S--------SS----------------------SS----------------------------------
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---------------------------------------------------------------------
>forward_326
--------------------------------------------------------------------------------
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------------------------------------------------------------------ACCTCACTCAGAAG
CACGTG--------------------------------------------------------------------------
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>reverse_1768
--------------------------------------------------------------------------------
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-------GCCGTAGGTGGTTCATGTGA-----------------------------------------------------
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---------------------------------------------------------------------
