>input_sequence_75330
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-------------------------------------------------------------------------ATGGCTG
TCAGCACTGGTAGCTTCTTGGCCATTGCCATGGCCCTCGCTCTCCTTAGCGCCCACATGACCCACGCCGGCCGCCTCCTG
GCCGACACCACGGAGGCAGCAGCGCCCACTGCAACGCCTGCCGCTGTTCCAGGCATCCCCGCACTGAAGCCGCCCGTGCC
CACCATGCCTACAATGCCACCAGTGCCAACCGTGCCCGCGCTCACCACACCGCAGGTCGCAGTGCCGCCGATGCCGGCCG
TGCCGGCGATCACTCTCCCGCAGCTAACGGTGCCCCCCATGCCGGCCGTGCCTGCGATCACCGTGCCTCAGGTCACTTTG
CCGCCCATGCCGGCCGTCCCCGCGGTCACCGTGCCCAAGGTCACGTTGCCGCCCATGCCGGCCGTCCCCGCGGTCACCGT
TCCCAAGGTCACGTTGCCGCCCATGCC------------------------------------------------CGCCG
TTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCCATCCCCAAGGTGGTATTGCCTCCGATG
CCTGCATTTCCCACTGTGAACGTGCCGATGCCATTCCTTGCGCCACCTCCTTTGGCATAG--------------------
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>chr2D_1_TraesCS2D01G375500
AAGCAACTAACCTCTCCGCCGGCTTCCCATGCTCACACATCACCATCACCTCTTCGCCAACACCACAGTAGTTTGGGTCC
TTGATTATAGTTGGGATCTAGACCAATCAAAGAAATGAGAATATTTCAAACAACTAGTTCAAATCGAACCGGAAAAACAA
AATCCCCAAATTGAAACCCTAGAATGCACTGACCTTGACAGCGGAGTCGCTGGAGGAGATGTACTGGGCAGCCGAGTACT
CGCTGGTGTCGTCGTTGTTCTACAACACCATGGCGGCCGGCGGCAAGCAACCTGGTCAGCGATAGCGACGAGAACAGAGA
AGAGAGAGCGCGCGCGCGAGAGAGAGAGAGAGAGGG---------------------------GGGGCGACCGGGTCATT
TTGACCAACCGATGCCAAGCGGCACCGTCAACCAAGCCATTAGTCCACGTAAGTGTTTTCTAGACA--------------
-------CGGTGATTTTTCAACGGATTACTGACTAGGTGGTATTCTGCAAACCTAGCATAAATGTGGTAGTTTTTTGCTT
TTAATTCGGTTCAAGGCAATGAAAGTGTCAGCTCATTGATATGA------------------------------------
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-------------AAAATACTCTTTTTAATCCCGATCATATACTGGAAGCTGTTGGAGGTGCCTTGCAAGTTTGCATCTC
AAA----TACTTGACCAAATACCTGAAAAGCTCAGTTTAGGCCAATCGTTGGCAAACCAATCTGATGCGCAGGCATTACT
TTCGAACCAGTAGGGAGTTGAACTAACTGACGACATTGAGTCACAGTGCGTATCACTACGC-----CAATACCACCTCCT
CATCAAACTGGCCTGACCATCAGTCCATCACCAATTCCAAACAGAACTGAAGTCGCTTTGCTTAATCTGGCCAACCACCA
ACCTAATCACACCCTGTTCCCATGATCATGCCAT-------CCTGCATAAATATGGGTGAACCATCCCGGTTGTCTGCAC
CAAGCAAGCTGAGAACCAATCCTGCAGCCAGTTACCCAGAAATCTGAGAGCACACTGCCCACAGCTTCCTGAAATGGCTG
TCAGCACTGGTAGCTTCTTGGCCATTGCCATGGCCCTCGCTCTCCTTAGCGCCCACATGACCCACGCCGGCCGCCTCCTG
GCCGACACCACGGAGGCAGCAGCGCCCACTGCAACGCCTGCCGCTGTTCCAGGCATCCCCGCACTGAAGCCGCCCGTGCC
CACCATGCCTACAATGCCACCAGTGCCAACCGTGCCCGCGCTCACCACACCGCAGGTCGCAGTGCCGCCGATGCCGGCCG
TGCCGGCGATCACTCTCCCGCAGCTAACGGTGCCCCCCATGCCGGCCGTGCCTGCGATCACCGTGCCTCAGGTCACTTTG
CCGCCCATGCCGGCCGTCCCCGCGGTCACCGTGCCCAAGGTCACGTTGCCGCCCATGCCGGCCGTCCCCGCGGTCACCGT
TCCCAAGGTCACGTTGCCGCCCATGCC------------------------------------------------CGCCG
TTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCCATCCCCAAGGTGGTATTGCCTCCGATG
CCTGCATTTCCCACTGTGAACGTGCCGATGCCATTCCTTGCGCCACCTCCTTTGGCATAGGCACGAACCAGAGCACCAGG
AGCGGGAATCTACATTTCC------------------ATGTTTACTAGACCATTTGGTTTTGGCCATTCACCGTTAGCCA
CCTTGTTTACATTATGTGGTTCCTATTTTCTTTGTGT------------------GTGTGTGTAGTATGTAGTACAGTAT
TAGGCTTGTCAATGGCCATCCCTTTTTCTTTCTCTTTGTATTGAGTTTTTACAGTGAACATATATGTCATTTT-ATCACA
TTTATGTCAGACATACTGTTATGCAATTACTGAGCAATAATTCGTCATGTGCATTCTAACTCCAACAAATCTGCTTTCTG
ACAAGTACTCCCTCCGTTCGGAATTACTTGTCGCAGAAATAGATGTATCTAGACATACATCCATTTCTGCGACAAGTAAT
TCCGAACTGAGGG-------------------------------------------------------------------
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----------------------------------------------------------------------AGTATAAGTT
TGAGCAATCAACAGTTGAACACAAGTACTTCCTCCGTTCATAAACATAAGATGTTTTTGAGATTTCAATATGGACTACAG
ACAGGCTGAAATGAGTGACCAAACACACTAAAACGTGTCTATATACATCCAACTCAGAAAAAAGTTACTAGAAAATCTTA
TTTGTGAACAAAGGAGTACATAGCTAGACTGG--ACATCTTTGACATACTACCTCCGTTCCAAATTACTCTGTCGCTGAA
ATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATACGTGCGACAAGTAATTCGGAACGTTGGGAGTACATTTA
TACATTCAAATCGTCCATCCAAAGAGCATTACCGCAAATGCACGGATCCAACTTCACTTTAAGCAGAACGCCCAGAAAGA
TACATTTCTGCGGTGGCAGTATGCAATGCAGCTCCAATTGGAAGGACATCCTCGTCGACGAAGAAATGCGGGTTGTGAGC
AGAGTGGACCGAACCGACTTTCTCATTTCTAATGCCGATACCAAACATAACGCCAGGAACTAACTGTTGGTAGAATGCAA
AGTCTTCCCCTGCCATGATCTTCTCTCCGGGCTTCA
>chr2A_48
ACA-----------------------------------------------TCTTCGCCAACAACACAGTAGTTTGGGTCC
TTGATTATAGCTGGGATCTAGACCAATCAAAGAAATGAAAATATTTCAAACAACTAGTTCAAATCGAACAGGAAAAACAA
AATCCTCAAATCAAAACCCTAGACTGCACTGATTTTTACAGCAGAGTCGCGGGAGGAGATGTACTGGGTGGTCGAGTGCT
CGTTCGTGTCGTCGATGTTCTGTGACACCATGGCGACTGGCGGCGAGCAATCTCGTCAGCGATAGCAACCG-------GA
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGCGCGGGGCCTCTGTCTGATGCGGGCCCACCGGGTCGTT
TTGACCAGCCGATGTCAAACGGTGCCGTCGGCCAAGCCGTTAGTCCACATAAGTGTTTTATGCAAAAAAAAAAGTTTACT
AAAGATGCGGTGATTTTTCAACGGATTACTAACTAGGTGATTTTCTGCAAACCAAGCGCAAATATTGTAGTTGTCTGCTT
TTAACT-GGTTCAAGGCAATGAAAGCGTCAGCTCATTGATAAGACTAGTCACAGTAGGAAGTAGCTTAGAGTAGTAACAT
GTATATGTTACTAGTCTATGTTACTATCTCCACAATGGGTAGTAACGTATGTGTTGTGTCATGCATCACTTCATTTATTA
TATTATAGACTCATTTTTTTCCTTGATATGTGTGATATTACAGTAACTAGCTATGTTACCATCTATGTTACTATCAGTGT
GGGTAGTCTAAGAAAAATATTCTTTTTAATCCCGATCATATACTGGAAGCTGTGGGAGGTGTTTTGCAAGTTTGCATCTC
AAA----TACTTGACCAAATACCTGAAAAGCTCAGTTTAGGCCAATCGTTGGCAAACCAATCTGATGCGCAGGCATTACT
TTCGAACCAGTAGGGAGTTGAACTAACTGACGACATTGAGTCACAGTGCGTGTCACTACGTCAAGTCAACACCACCTCCT
CATCAAAGTGGCCTGACCATCA--------CCAACTCCAAACAGAACAGAAGCCGCTTTACTTAGTCTGGCCAACCACCA
ACCTAATCACACGCCGATCTCCTGATCATGCTAGATGCTACCCCGCATAAATATGCATGCACGAATCCTGTTGTCTGCAG
CAAGCAAGCTGAGAACCAATCCTGCACCCAGTTACCCAGAAATCTGAGAGAACACTGCCCACAGCTTCCTGAAATGGCTG
TCAGCACTGGTAGCTTCTTGGCCATTGCCATGGCCCTCGCTCTCCTTAGTGGCGACATGGCCCACGCCGGCCGCCTCCTG
GCCGACACCACGGAGGCAGCAGCGCCCGCTGCAACGCCTGCCGCTGTCCCAGGCATCCCCGCGCCGAAGCCGCCCGTGCC
CACCATGCCTACAATGCCACCAGTGCCAACCGTGCCCGCGGTCACCACACCGCAGGTCACAGTGCCCCCGATGCCAGCCG
TGCCCGCGCTCGCCGTTCCCCAGTTCACGGTACCCCCCATGACGGCCGTGCCCGCGATCACCGTGTCCC-----------
-------------------------------------AGGTCACGTTGCCGCCCATGCCGGCCGTCCCTGCGGTCACCGT
GCCCAAGGTCACGTTGCCGCCCATGCC------------------------------------------------CGCAG
TTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCCATACCCAAGGTGGCATTGCCTCCGATG
CCTTCCATTCCCACTGTGAACGTGCCGATGCCAACCCTTGCGCCACCTCCTTCAGCATAGGCACGAACCAGAGCACCGGG
AGCGAGAATCTACAATGCTGGCTCAATGATTTTGGCAATGTTTACTTGATCATTTGATTTTGGCCATTTACCGTTCGCCG
GCTTGTTTACATTGTGCGGTTCCTATTTTGTTTTTGTTTTTGTTTTTGTGTTTGTGTTTGTGTA----GTAGTAC--TAT
TGGGCTTGTCAATGGCCATCTCTTTTTCTTTCTCTTTGTACTGAGTTTTTACAACGAACATGTATGTCATTTTTATCACA
TTTATGTCAGACATACTGTTATGTACTTATTGAGCATTAGCCCGCCATGTGGGGTCTAACTCCAACAAATCTGCCTTCTG
ATGAATATGCATTTGAGCCTGAT---------------------------------------------------------
------------G-------------------------------------------------------------------
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----------------------------------------------------------------------AATATGCATT
TGAGCCTTGAAAAGTTGAACACAAGTAGGAGTAC----------------------------------------------
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---------------GTGCACAACTAGACTTGGAACATCTTTGACA----------------------------------
------------------------------------------------------------------------TACATTTA
TACATTCAAATCGTCCAAACGAAGAGCATTACAGCGAATGCACGCTTCCATCTTCATTTTGAGTGGAACGCCCAGAAAGA
TACATTTCTGCGGTGGCAGTATGCAATGCAGCTCCAATTGGAAGGACATCCTCATCGACGAAGAAATGCGGGTTGTGAGC
AGAGTGGACCGAACCGACATTTTCATTTCTAATACCGATACCAAACATAACACCAGGAACTAACTGTTGGTAGAATGCAA
AGTCTTCCCCTGCCATGATCTTCTCTCCGGGCTTCA
>chr2B_520
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-------GGTTCAAGGCAAAGAACGAGTCAGCTCATTGATAAAA------------------------------------
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-------------AAAGCTCC--TTTTAATCCCGATCATACACTGGAAGCAGTTAGAGGTGCT-------TTTGCATCTC
AATTACGTACTTGACCAAATACCAGAGAAGCTCAATTTAGGCCAATCGTTGGCAAACCAATCTGATGCGCAGGTATTACT
TCGGAACCAGTAGGGAGTTGAACTAACTGATGACATTGAGTCACAGTGCGTGTCACTACGTCAA-----TACCAGCTTCT
CATCAAACTGGCCTGACCATCA--------CCAACTCCAAACAGAACAGAAGTCGCTTTGCTTAATCTGGCCAACCACCA
ACCTAATCACACCCCGATCTACCCATCATGTTAT-------CCTGCATAAATATGCATGCATGATCCCTGTTGTCTGCAC
CAAGCAAGCTGAGAACCAATCCTGCACCCAATTACCCAGAAATCGGAGAGCACACTGCACACAGCTTCCTGAAATGGCTG
TCAGCAGCTGTAGCTTCTTGGCCATTGCCATGGCCCTCGCTCTCCTTAGCGGCCACATGGCCCACGCCGGCCGCCTCCTG
GCGGACACCACGGAGGCAGCAGCGCCCACTGCAACGCCTGCCGCTGTCTCGGGCATCCCCGCACCGAAGCCGCCCGTGCC
CACCATGCCTACAATGCCACCAGTGCCAACCGTACCCGCGCTCGCCACACCGCAGGTCACAGTGCCGCCGATGCCGGCCG
TGCCCGCGCTCACTGTCCCGCAGCTCACGGCGCCCCCCATGCCGGCCGTGCCCGCGATCACCGTGCCCC-----------
-------------------------------------AGGTCACGTTGCCGCCCATGCCGGCCGTCCCTGCGCTCACCGT
GCCCAAGGTCACGTTGCCGCCCATGCCGGCCGTCCCCGCGGTCACTGTGCCCAAGGTCACGTTGCCGCCCATGCCCGCAG
TTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCCATCCCCAAGGTGGCATTGCCTCCGATG
CCTTCCATTCCCACTGTGAACGTGCCGATGCCATTCCTTGCGCCACCTCCTTCAGCATAGGCACGAACCAGAGCACCGGG
AGCGGGAATCTACGATGCTGGTTCAATGATTTTGGGAATGTTTACTTGATCATTTGATTTTGGCCATTTACCGTTGGCCA
GCTTGTTTACATTGTGCGATTCCTATTTTGTTTTTGT------------------GTTTGTGTAGTATGTAGTAC--TAT
TGGGCTTGTCAATGGCCATCTCTTTTTCTTTCTCTTTGTACTGAGTTTTTACAATGAACATGTATGTCATTTTTATCACA
TTTA-----------CTGCTATGTACTTATTGAGCATTAGCCCCCCATGTGCGGTCTAACTCCAACAAATCTGCCTTCTG
ACAAATGTGCATTTGAGCATTGATTTTTTTTATAACTCATCTCTTCCTTTATTCCATCAAAACGATCGTATCACTTGCAA
GGAAGGGTGGCGAATCCATCCAGACAGGAGTAGAGTACTACTTAGCTATTTTAGCTACATGAGCAGCCTGATTACAATGC
TCAAACAAGACATGGTTAAAATCTTAAGACAGTCATCGATAATGGCACTTGCTACTGAATTCAAGACACCTTCATTAAGA
TCATTGACAACCCTTCATTATCCGAGGCCACTTCAATCTTGCTGCAACCCACCATACGTGCCTTCTGACAAATATGCATT
TGAGCCTTGAAAAGTTGAACACAAGTAGGAGTAC----------------------------------------------
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---------------GTACACAACTAGACTTGGAACATCTTTGACA----------------------------------
------------------------------------------------------------------------TACATTTA
TACATTCAAATCGTC--------------------GAATGCACGCTTCCATCTTCATTTTGAGTGGAACGCCCAGAAAGA
TACATTTCTGCGGTGGCAGTATGCAATGCAGCTCCAATCGGAAGGACATCCTCGTCGACAAAGAAATGTGGGTTGTGAGC
AGAGTGGACCGAACCGACTTTCTCATTTCTAATACCGATACCAAACATAACGCCAGGAACTAACTGTTGGTAGAATGCAA
AGTCTTCCCCTGCCATGATCTTCTCTCCGGGCTTCA
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-----------------
----------S---------------------------S------------------------------S----------
-----S-----SS----------S--------SS--S-----S-------S-----------------SS-S-----S--
--S-S---------S------SSS-----------S-S------S-----S--S------------S--SSSSSSSSS--
--------S-S-S-S-S-----------------SS------------------------------S-S--------S--
-------S------S---S---SS-----SS-------S---------S----------S-SS-S---------------
------------------------------S--------S-S-----------S---SS----S-S------S-S-----
----S-S------------------S---------------S--------------------------------------
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--------------------------------------------------------------S-----------------
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---------------------------------------------------S--------S-------------------
----------------------SSSSSSSS----S------------S--------------------------------
--------------S-S--S-S---------S-----------------------SS--S--S-----S-----------
--------------------------S-----------------------------------------------------
---------------------------------------------------S-------S--------------------
-----------------------------------------------S----------------S---------------
----------------------------------------------------------S---------------------
----S---S-----S----------S--------------------------S--------------S-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S-----------
S-----------------------------------------------------------------------------S-
------------------------------------------------------------------S-------------
---S-SS---------------------------------------------SS-----------------------S--
--------------S-S-S---------------------------S--S------S-----------S------S----
S------------S--S------------S---S-----------------------S-----------------SS---
-S------------------S-------------------S------------S-------S------------------
-----------------------S-S---S------S--SSS--S-------SS--------------------S-----
----S--SS-SS-SSSSS-S-----SS--S-SSS-SSS--SSS-SSS-S--SS-SSS--SSSSSS--SSSSSSSSSSS-S
SSSSSSS--SS---------------------------------------------------------------------
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-----------------------------------------------------------------------S---SSS--
-----SS-S--S---------------SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----S-S-------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-----------------SS-S-----------S--S--------SS----S-----S---S--SS---------------
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---------------------------------S----------------------------------------------
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>forward_44
------------------------TCCCATGCTCACACATCACC------------------------------------
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>reverse_1529
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--------ATCACTCTCCCGCAGCTAAC----------------------------------------------------
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>forward_230
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--------------------------------------------------TGGAGGAGATGTACTGGGCA----------
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>reverse_1894
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-----------------------------------------------------GGCATAGGCACGAACCAGAG-------
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>forward_232
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----------------------------------------------------GAGGAGATGTACTGGGCAGC--------
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>reverse_2254
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-------------CCGTTCGGAATTACTTGTCGC----------------------------------------------
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