>input_sequence_75311
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------------------------------------------------------------ATGTCGAAGTACGGAACCAT
CCCCATATCCTCCTCCTCCTCCTCGGATGCCCCGCCTCCCGGCTCCTCTCCGCTCGACTTCATCTCCCGGGCCAAGGCCC
GCGGCGCGTCGGCACTCGCGACGCGCCAACCCTGGCGTGAGCTGGCCGACCCAAAGGCCCTCGCCGTGCCCCGGGGGCTA
GGGGACGCCTACCTCCGCGCCCGCGCCAACCTCGCGCATTTCTCCATGAACTACGCCATCGTGGTCCTCGGCGTCGTCTT
CCTCTCCCTGATCTGGCACCCCTTCTCCCTCATCGTCTTCCTCGCCTGCATGGTTGCCTGGGTCTTCCTCTACTTCCTCC
GCGACGTCCCGCTCGCTCTCTTCGGCCACACCATCGGTGACGGCGTCGTGCTCGCCGTCCTCTCGGCCCTCACGCTCATC
CTGCTCCTGCTCACCGGAGCCACCGGCAACATCCTCACCTCGCTGCTCGTCGGGCTGGTGCTCGTCCTGCTGCACGCCTT
GCTGCATCGCCTCGCAGACAGCATCGACGAGGAGGCCGGACGGTGGTACACACCCGTCACACCGCCGCAGCCGTACTAG-
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>chr1B_1_TraesCS1B01G143000
TTAGCAGTGTGATGTCTATTACGCTAAGTGTAAGCAGGTCCACTATAATCGATATCAAAGAAACCACAATTTTTAATTAA
AGAACGGAAAGTAGACATACGATAATAATTCACACTACCATTACATATATCAGCATCATACATAATGTCATTGAGGTTGC
CCATACAGATCATAGGCTTACCCAGGTGGTCATACACAAAATTGGTAACATGATTCCAAATAGTACCAGTTTGCCTATGA
TAAGGATCACCATATATACATATCAAACAAAAGTGAACATCCGAAGCTACATGAACTACGTTCGCTAAGATATAATGAAA
GGAGGCGCTATGAACAGAAACTTTGAGATCATCATTCCACATAAGCCAAAGCCCACCCGAAGAACCTCTAGAAGGAACCA
CAACACTGTTACTAACATCAAACCTATTAACAAGATCCGTGGAGCGAATCTTAGAAGTTTTAATTTCAGAAACAAAGATA
ACTTGAGCTATGGCGGGCCGTGATGGGATGTGGGCATTGATGAGGAGTAGGTCTTAATTTAGGCGGCAGATTTTTACATC
CAATATGGCTGTTCTTCTATTGATTGGTCATGAGTATGTTCTCACTGATCAAGGATGTGTTGTATCGTGTAATA--CTCT
TCTCTTCAATGAAAGTGATAGGCTTGAAAAAATAAAATAAGGGTTGTGATCCACATGCTTGTACACGATGCTACTATTCT
CATGATTGAATAAAGGAGGTTTTGGATTGTCCAAAAGGAAGCCTAGGTATAACTGAGTCCACGATCCAGA----------
TCGTGCCGCTTCCTACAAGTCCACCTAAGCGCATATCCCC-ACTTGCCAGCCTTCATACCGACGCGTTTACCTCCCCATT
TATTGCATAATACTGCATAGGACCTGCCGGGTTGCAGACTCCCACATCTACACGTCGAGTTCAGTCCGCCCCACCCCAAC
ACGTTTTCCTCCTACCGTC-------GCCGGCCACCGGCCGTCTCCACCTCCAGCCAGCCATGTCGAAGTACGGAACCAT
CCCCATATCCTCCTCCTCCTCCTCGGATGCCCCGCCTCCCGGCTCCTCTCCGCTCGACTTCATCTCCCGGGCCAAGGCCC
GCGGCGCGTCGGCACTCGCGACGCGCCAACCCTGGCGTGAGCTGGCCGACCCAAAGGCCCTCGCCGTGCCCCGGGGGCTA
GGGGACGCCTACCTCCGCGCCCGCGCCAACCTCGCGCATTTCTCCATGAACTACGCCATCGTGGTCCTCGGCGTCGTCTT
CCTCTCCCTGATCTGGCACCCCTTCTCCCTCATCGTCTTCCTCGCCTGCATGGTTGCCTGGGTCTTCCTCTACTTCCTCC
GCGACGTCCCGCTCGCTCTCTTCGGCCACACCATCGGTGACGGCGTCGTGCTCGCCGTCCTCTCGGCCCTCACGCTCATC
CTGCTCCTGCTCACCGGAGCCACCGGCAACATCCTCACCTCGCTGCTCGTCGGGCTGGTGCTCGTCCTGCTGCACGCCTT
GCTGCATCGCCTCGCAGACAGCATCGACGAGGAGGCCGGACGGTGGTACACACCCGTCACACCGCCGCAGCCGTACTAGT
CTTTTAATTCTGAGCTGCTCCTTGTAATTTCGTTGCTTCTTGGTCTGTGAATTGTGTTCCGTAGATCGCAGCACTCGTTA
ATTATTTTGTTGAGTTGTATC---------------------------------------------CGTTCTTAATCCAC
ATACGCACTTGCTCATGAATAATACGTGCGAAATAAGTGTTCGTGTTCCATTTTTATCTTTTTGAACATTGATGAGACGA
TGAACTAGGGTCAATTATTGGGAACAGGTGACCAATTTGAAGTCAACTTCGGCTCAATTGTATGTTTCTTGTATAATACT
TCCTCCGTCCGAAAATACTTGTCATAAAAATAAATGCATGTAAAACTAAAATACGTCTAGATATAACCATTTCTTTGACA
AGCATTTCCGGACTGAGGGAGTAATTAATGGTTGCTTAGCTCACAAGGCGTTTGGAAGAAGGAAGTACATGGTCAAATTC
GTGCGTTGCCTTGTGCTCCAGGATGTGGCCAGAAACCGACGTTCACGTTTGAGATTGGGACGTTGATGCGACCGTATGAA
CTAGTTGAACCAATTATTTTGCTCATGGTTTTGGCAAACACTAA-----------------------------------A
TAAAGATATGAGAGCATTTTCAATAGCTACCCTATTTTACGGCACCAAAGGAGAGTGTTATAGAAAAAATTCGGCACC--
--------------------GCAAAGCGCCGTTTCCTAGGGATGAAAACGGCTCGAAAGCCGATGAAAATGGGTGCTATC
ACATTTGTTTTCATAATTTCTATGA-AAGCAAAAACGAATACA-GAATGCCAAAAATGAATACAAAAACATATACTACCG
AAAACATACACCGAGCGAAGACGGTGCAGAAACGGCAAAGGAAGCAGGTGCTCACTAGAACTTGAAAACCCCTTGAACCA
AAGGG-AAAAAC---ATAAGAAAACCAACATATTTAATCAAC------CATGACTACACAATATTATAATGGTTATATTA
TAATATATGAATTTTGTGATATATTTTTTCAATTGTGGCAATACAAACATATTTGTGGTAATTAGACATATAA
>chr1D_569
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--------CTGTTCTTCTATTGATTGGTCATGAGTATGTTCTCACTGATCAAGGATGTGTTGTATCGTGTAATGCTCTCT
TCTCTCCAATGAAAATGATAGGCTTGAAAAAA-AAACTAAGGGTTGTGATCCACATGCTTGTACACGATGCTTGTCG---
--------------------------------AAAAGGAAGCCTAGGGATAACTGAGTCCACGATCCAGA----------
TC----------CTACAAGTCCACCTAGGCGCATATCCCCCACTTGCCAGCCTTCATACCGACGCTTTTACCTCCCCATT
TAT----------TGCATAGGACCTGCCGGGTTGCAGACTCCCACATCTACACGTCGAGTTCAGTCCGCCCCACCCCAAC
ACGTTTTCCTCCTACCGTC-------GCCGGCCACCGGCCATCTCCACCTCCAGCCAGCCATGTCGAAGTACGGAACCAT
CCCCATCTCCTCCTCCTCCTCC---GATGCCCCGCCTCCCGGCTCCTCTCCGCTCGACTTCATCTCCCGGGCCAAGGCCC
GCGGCGCGTCGGCACTCGCGACGCGCCAACCCTGGCGTGAGCTGGCCGACCCAAAGGCCCTCGCTGTGCCCCGGGGGCTA
GGGGACGCCTACCTCCGCGCCCGCGCCAACCTCGCGCATTTCTCCATGAACTACGCCATCGTGGTCCTCGGCGTCGTCTT
CCTCTCCCTGCTCTGGCACCCCTTTTCCCTCATCGTCTTCCTCGCCTGCATGGTCGCCTGGGTCTTCCTCTACTTCCTCC
GCGACGTCCCGCTCGCTCTCTTCGGCCACACCATCGGTGACGGCGTCGTGCTCGCCGTCCTCTCGGCCCTCACGCTCATC
CTGCTCCTGCTCACCGGAGCCACCGGCAACATCCTCACCTCGCTGCTCGTCGGGCTGGTGCTCGTCCTGCTGCACGCCTT
GCTGCATCGCCCCGCGGACAGCATCGACGAGGAGGCCGGACGGTGGTACACACCCGTCACACCGCCGCAGCCGTACTAGT
CTTTTAATTCTGAGCTGCTCCTTGTAATCTCGTTGGTTCTTGGTCTGTGAATTTTGTTCCGTGGATCGCAGCACTCGTTA
ATTATTTTGTTGAGTCGTATC---------------------------------------------CG------------
--------------------------TGTGAAATAAGTGTTCTTGTTCCATTTTTATCTTTTTGAACATCGATGAGACGA
TGAACTATGGG--ATTATTGGGAACAGGTGACCAATTTGAAGTCAACTTCCGCTCAATTGTATGTTTCTTGTATAATAAT
GG------------------------------------------------------------------------------
-----------------------ATTAATGGTTGCTTAGCTCACAAGGCGTTTGGAAGAAGGAAGTACATGGTCAAATTC
GTGCGTTGCCTTCTGCTCCAGGATGTGGCCAGAAACCGACGTTCACGTTTGAGATTGGGACGTTGATGCGACCGTATGAA
CTAGTTGAACCAATTATTTTGCTCACGGTTTTGGCAAACACTAATTAAAAATCATCTAGATGTGAATTAGACAAACTGAA
TAAAGATATAAGAGCATCTCCAATAGCTACCATATTTTAAGGCACCGAAGGAGGGTGTTATAAAAATAATTGGGCACCAA
AAGTGTCCTTTTTGGGCACCATAAAGCACCGTCTCCTAGTA---------------------------------------
-----TGTTTTCATATTTTTTGTCATAAGCAAAAATGAATACAAGAATACCAAAAATAAATACAAAAACAGATACTACTA
AAAACGAACACAGAGCGAATATGGTGCGGAAACGGCAACAGAAGCATGTGCTCACCAGAACTTGAAAACACCTTGAACCA
AAGGGAAAAAAC---ATAAGAAAACCAACATATTTAATCAACTGTTAACATGACTACACA-----ATGATGGTTATATTA
TAATATATGCATTTTGTGATATTTTTTTC--ACTGTGGCAATACAAACATATTTGTGGTAATTAGACATATAA
>chr1A_676
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-------------------------------------TAAGGGTTGTGATCCACATGCTTGTACACGATGCTACTATTCT
CGAAA---------------------------------AAGCATAGGGATAACTGAGTCCACGATCCAGATCGTGCCGCT
TC----------CTACAAGTCCACCTAGGCGCATATCCCC-ACTTGCCAGCCTTCATACCGACGCTTTTACCTCCCCATT
TATTGCATA---CTGCATAGGACCTGCCGGGTTGCAGACTCCCACATCTACACGTCGAGTTCAGTCCGCCCCGCCCCAAC
ACGTTTTCCTCCTACCGTCGCCGGCGGCCGGCCACCGGCCGTCTCCACCTCCAGCCAGCCATGTCGAAGTACGGAACCAT
CCCCATCTCCTCCTCCTCCTCC---GATGCCCCGCCTCCCGGCTCCTCTCCGCTCGACTTCATCTCCCGGGCCAAGGCCC
GCGGCGCGTCGGCACTCGCGACGCGCCAACCCTGGCGTGAGCTGGCCGACCCAAAGGCCCTCGCGGTGCCCCGGGGGCTA
GGGGACGCCTACCTCCGCGCCCGCGCCAACCTCGCGCATTTCTCCATGAATTACGCCATCGTGGTCCTCGGCGTCGTCTT
CCTCTCCCTGCTCTGGCACCCCTTCTCCCTCATCGTCTTCCTCGCCTGCATGGTCGCCTGGGTCTTCCTCTACTTCCTCC
GCGACGTCCCATTCGCTCTCTTCGGCCACACCATCGGTGACGGCGTCGTGCTCGCCGTCCTCTCGGCCCTCACGCTCATC
CTGCTCCTGCTCACCGGAGCTACCGGCAACATCCTCACCTCGCTGCTCGTCGGGCTGGTGCTCGTCCTGCTGCACGCCTT
GCTGCATCGCCCCGCGGACAGCATCGACGAGGAGGCCGGACGGTGGTACACATCCGTCACACCACCGCAGCCGTACTAGT
CTTTTAATTCTGAGCTGCTCCTTGTAATCTCGTTGGTTCTTGGTCTGTGAATTGTGTTCCGTGGATTGCAGCACTCGTTA
ATTATTTTGTTGAGTTGTATCCGTTCTTAATCCGCATGCGCACTTGTTCATGAATAATACTCCGTACG------------
--------------------------TGCGAAATAAGTGTTCCTGTTCCATTTTTATCTTTGTGAACATTGATGAGACGA
TGAACTATGGTCAATTATTGGGAACAGGTGACCAATTTGAAGTCAACTTCGGCTCAATTATATGTTTCTTGT---ATAAT
GG------------------------------------------------------------------------------
-----------------------ATTAATGGCTGCTTAGCTCACAAGGCGTTCGGAAGAAGGAAGTACATGGTCAAATTC
GTGCGTTGCCTTGTGCTCCAGGGTGTGGCCAGAAACCGACGTTCACGTTTGAGATTGGGACGTTGATGTGACCGTATGAA
CTAGTTGAACCAATTATTTTGCTCACGGTTTTGGCAAACACTAA-----------------------------------A
TAAAGATATGAGAGCATCTTCAATAGCTACGCTATTTTACGGCACGAAAGGAGGGTGTTATAAAAAAAATC---------
--------------GGCACGGCAAAGCGCCGTTTGCTAGGGATGAAAACGGCTTGAAAACCAACGAAAGTAGATGCTATC
ACATTTG---------------TGA-AAGCAGAAACAAATACA-TAATGCCAAAAATAAATACGAAAAAC-ATACTATCG
AAAACGAACACGGAGCGAAGATGGTGCAGAAACGGCAACGGAAGCAGGTGCTCACCAGAACTTAAAAACCCCTTGAATCA
AAGGGAAAAACATATATAAGAAAACCAACATATTTAATCAACTGTGAACATGACTACACAATATTATGATGGTTATATTA
TAATATATGCATTTTGTGATATATTTTTTAAACTGTGGCAATACAGACAT-TTTGTGGTAATTAGACATA---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-----------------------------------------------------------------S------
-----S--------S-----------------S---S-------------------------------------------
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S--------------------------------
--SSSSSSSSSS---------------S-------------------------------------S--------------
---------SSS--------------------------------------------------------------------
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------S---------------SSS-------------------------------------------------------
----------------------------------------------------------------S---------------
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----------S-------------------------------------------S-------------------------
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-----------S---S----------------------------------------------------------------
----------------------------S------S--------------------------S-----------------
--------------------------------------------------------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-------------------------------------
-------S----------------------------------------------------------------------S-
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
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-------------------------S------------------------------------------------------
-----------------S-----------------------------------S--------S--------S--------
-----------------------------------------------------S----S--S-S----S-S-S-------
---------------S---S-S-----------------------------------S------------S---------
-----SS----S---------S----------------S----------------S------------------------
-------------------------------------------------------------------S------------
---------S-------------------S--S----------------------------------------
>forward_498
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------------------------------------------------------------------------------TA
ACTTGAGCTATGGCGGGC--------------------------------------------------------------
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>reverse_2000
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-------------------------------------------------------------------------------A
AGCATTTCCGGACTGAGGG-------------------------------------------------------------
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