>input_sequence_75303
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--------------------------------------------------------------CTATATAAGCCGTCCAGA
GATCAAGATTGTAGCTACCCATATAGACAGCTGATTAAGATAGTACTAAATTGAAAC-----------------------
-AATGTGGATGAAGACCGTGTTCTGGGGGCTCCTAGTATTCATGCTCGTGGCGACAACAATGGCGGTCGAGTATGGTGCA
AGGAGCCATAACAGTGGTCCTTGGAGTTGGTGCGATCCGGCGACGGGCTACAAGGTGAGCGCACTCACGGGCTGCCGGGC
AATGGTGAAGCTCCAGTGTGTGGGCAGTCAGGTGCCCGAGGCTGTCCTAAGAGATTGCTGCCAGCAGCTGGCCGACATCA
ACAACGAATGGTGCAGGTGCGGGGACCTCAGCAGCATGTTGCGTAGTGTTTATCAGGAGCTCGGCGTGCGTGAGGGGAAG
GAGGTGC---------TCCCAGGTTGCCGGAAGGAGGTGATGAAGCTCACGGCGGCGAGCGTGCCTGAGGTCTGCAAGGT
GCCCATTCCCAACC---CGTCGGGAGACAGAGCAGGTGTCTGCTACTG---GGCCGCGTATCCGGACGTCTAGTCAAGCG
AATCTGCATCTTAATTGGTGC----------------------------------------GGTGCGTGCGCACAAGATA
A-------------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G000200
TATGAATACAGTTTACCGTGCTAATTAGTTTGTCAGGGCGGTGCATGCAATCCATTACTATATTAGCTAAGTCTTTTACT
ACCATAAGCGTCAGAGTGCTGCGGCCGTGTATGGTAACGAGAATTTAATCCATTACTATATTGTGTACTATTCATTACTA
TCATTTACTGAACCATAGCTGACGTCGGACAGGTGGCTAGTCGAGCGGGGCATAAGCAACCAGCGCGTACGGTTAGGAGT
TTAGCGCCACCGTTTTTATATGAAATGTACTTAATCTTGTGGGGAAAGAAATGTGACATATGATTAAATAGAAATGTGAC
AATCTTGATCTCTGGACGGATTAAATAGGAGTTTTACGCTCCGGCACAGTTTAGCGCCACCACTATTTGGTATGCACCAG
TTTTTGTTTCCACCCCGTACCGAAATGAGCTTTATCCGGTGGGGAAATAAATGTGACATACTAATGTTTTCCTCACGCAA
AGGTGTGCATACGTACCTTGCCAACAAAATGAATTATGCATTGCTAATTTTGTTCGCATGAATTAACTTAGGATCCACCA
ACAAATTCTGGGTTTTACTTAACATTCAGAAAGCTTCCAATTTTATGAACAGATCCTGATGACACTCTTGGAAGATG-GA
AGAAAGCTAATTGTAACGTGTCAGCATGTATAATATATACAAAGCCCACAAGCCACTCATGCAGATGGGGTGATGGATAG
CTGGGGTTTTATGTCCGTTCTTTGCACCCCATTGCATTTTCCTTGCTATATGTATACTGTATATGGACAAAGGATGTAGC
TAATTTTGTCGATATGGTAACCATGTATGCTAACTTTTTAGTAGTTAGACTAACAAACTATGAGTTGTAATCACAAAGTT
GCCAAGCATGACAAAATACCTCACGGGGCTAGATCGAGAACGGAGGCGTGCAAGCAAACGCCGCTGGCACCAGGCGCAAG
CCACCCACGGAGATCATGAACACCTC---------------------TTTATCTTTCTCTCGCTATATAAGCCGTCCAGA
GATCAAGATTGTAGCTACCCATATAGACAGCTGATTAAGATAGTACTAAATTGAAAC-----------------------
-AATGTGGATGAAGACCGTGTTCTGGGGGCTCCTAGTATTCATGCTCGTGGCGACAACAATGGCGGTCGAGTATGGTGCA
AGGAGCCATAACAGTGGTCCTTGGAGTTGGTGCGATCCGGCGACGGGCTACAAGGTGAGCGCACTCACGGGCTGCCGGGC
AATGGTGAAGCTCCAGTGTGTGGGCAGTCAGGTGCCCGAGGCTGTCCTAAGAGATTGCTGCCAGCAGCTGGCCGACATCA
ACAACGAATGGTGCAGGTGCGGGGACCTCAGCAGCATGTTGCGTAGTGTTTATCAGGAGCTCGGCGTGCGTGAGGGGAAG
GAGGTGC---------TCCCAGGTTGCCGGAAGGAGGTGATGAAGCTCACGGCGGCGAGCGTGCCTGAGGTCTGCAAGGT
GCCCATTCCCAACC---CGTCGGGAGACAGAGCAGGTGTCTGCTACTG---GGCCGCGTATCCGGACGTCTAGTCAAGCG
AATCTGCATCTTAATTGGTGCGGTGCGTGCGCACAAGATAAATAAAATTAAGTAATGGTGCGGTGCGTGCGCACAAGATA
AATAAAATTAAGTAATGGTGTATGTGCCTCTGCGAGATGCATGGGTCATGAATAAATGTGAACTTTGTTTCCTGTTGATG
GATTACACTAGTATCTCAGATTTGTACCTTACCAATCACGCATGCCCTCTTATCCTTGTTCTGAAGCCTTAATTTGGCTA
TACGTACTGCGGCGAGATGTTGTTGTAAGAACATTAGCAAGTCGAGAGAAAGAGAGAGAGTAAATTGCTAGCACATCCCC
AGGGTCTCATTATGGACGCTCTATCCTGTGACACCGTCACAATACAGCACACCAGCCACCCGAGCACTGGAACATGACGT
CCGCTCCCCCCTTGTTCCCATGCTATTATGTTGGCATTGGTTATATCGTGTGTCCATCCTGCATTTTATGAGAGATCTAG
TATACAAGAGTCCTAATAAGACACTACATCATATCGTGTCTACACACTATACGATTCCAAGTTCAACTATAATTTACCTT
ATACAATAATATTCGACACAACTCTAACAAATTCCACCTTGCGGAATATTCTTCAACATCTTGGAATCATCTCCGAGGAA
TTCTAGAGCAACCATTGAAACAGAATCACTCCACTTTTGGTAAGTGAATCCCGCAGAAAAGAAGCAAGCTTGAATATCAC
CCAAGATGTCAAGAATGCTAATTTCCTGTGAATATGTATATCAGGCACGTCAAGCTTCAAACAGAATATGTAGGTGTCAT
TGACAGAGTCCCAATACATGGAATTCGTAACATCTCACACAGAAGAAGAAGCTCCTTGGAAACTGCCCCTCTTCCGGGAG
CCAGTAGCCATTGAAATTTCACTTGAGCTGGTACAGTGGAGTGCAATACCATTCATGAAGCCGCTACAAATTCAGCACAG
CCACAGGTTCATCCAGTGGACCCCGTAGACATATAGATAGCATTTCTTATCCTTTCCCAACAAATCTAGTATAGCCGCTA
G
>chr3D_462
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-------------------------------------------------------------TAATGATTTCCTCATGCAA
AGGTGGACATATGGTGC-------CAAGATGAATCTTGCATTGCTAGTTTTCTTTGCGTGATCTAATATAGAATCCTCTA
ACAAACTATGGGTTTTACTCAGCACTTGAAAAGCTGGCAATTATGCAAACACATCAGCACGACACTGTTGGAAGTTGCAA
ACAAAATTAGTTGTGACATGTCA----GTATAATATATAC-AAGCCCACAAGCCACTCACGCAGATGGTATGATGGACAG
CTAGGGTTTTATGTCCGGTCCGTCGACCTCTTTGCATTTCCCTTGCCATATATATGAACCAAAA---------ATGTAGC
TAATTTTGTCGATATGGTAACCATCCTAG----CTTTTTAGTAGTGCGATTAACAAACTATGGGTTGTAATCACAATGTT
TAGATGCATGCCAAAATACATCACCGCACTGGATCAAGAACAACGACGTGGAAGCCCAATCTATAGGCACTAGACACAAG
CCACCCACGCAGATCATGAACGGCTTATGTCTGTTTCCTTGCACCTTTTTAGCTTTATCTAGCTATATAAACCGTCCAGA
GATCAAGAGTGTAGTTATCCATATGCACAACTGATTAAGATAGTACTAAATTAGAGGCAGAAAGTCTGTGCATAGAGGAA
GAATGTCGATGAAGACCGTGTTCTCGGTGCTCCTACTATGTATGCTCGTGGCGACACCCATAGCAGCCGAGTACGACGCA
TGGAGCGTTAACAGTGGTCCTTGGAT---GTGCTATCCGGGGCAGGCCTTCCAGGTTCCCGCGCTCCCTGCCTGTCGTCC
ATTGCTGAGGCTCCAGTGCAATGGCAGCCAGGTGCCCGAGGCTGTCCTAAGGGACTGCTGCCAGCAGCTCGCCCACATCA
G---CGAGTGGTGCAGGTGCGGGGCCCTCTACAGCATGTTGGACAGCATGTATAAGGAGCATGGCGCGCAGGAGGGACAG
GCAGGGACAGGAGCGTTCCCACGCTGCCGGAGGGAGGTGGTGAAGCTGACGGCGGCGAGCATCACAGCGGTCTGCAGGCT
ACCCATCGTCGTTGATGCGTCCGGAGATGGAGCGTATGTCTGCAAGGATGTGGCCGCATACCCAGACGCCTAGTCAAGCA
AAT-----------------------------------------------------------------------------
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>chr3D_505
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------------------------CAAGATGAATCTTGCATTCCTAGTTTTCTTTGCGTAAACTAATATAGGATCCTCTA
ACAAACTTTGGGTTTTACTTAGGACTTGGAAAGCTGACAATTATGCAAAAAAATCCGCATGGCACTGTTGGAAGTTG-AA
AAAAAATTAGTTGTGATGTGTCAACG----TAATATATAC-AAGCCCACAAGCCACTCATGCAGATGGTATGATGGACAA
CTAGGGTTTTATGTCCGTTCCGTCGACCTCTTTGCATTTCCCTTGCCATATATACGAACC---------AAGGATGTAGC
TAATTTTGTCGATATGGTAACCATCCTAG----CTTTTTAGTAGTGCGATTAACAAACTATGGGTTGTAATCACAATGTT
TAGATGCATGCCAAAATACATCACCGCACTGGATCAAGAACAACGACGTGGAAGCCCAATCTATAGGCACTAGACACAAG
CCACCCACGTAGATCATGAACGGCTTATGTCTGTTTCCTTGCACCTTTTTAGCTTTATCTAGCTATATAAAACGTCCAGA
GATCAAGAGTGTAGTTATCCATATACACAACTAATTAAGATAGTACTAAATTAGAGGCAGAAAGTCTGTGCATAGAGGAA
GAATGTCGATGAAGACCATGTTCTCGGTGCTCCTACTATGTATGCTCGTGGCGACACCCATAGCAGCCGAGTACGACGCA
TGGAGCGGTAACAGTGGTCCTTGGAT---GTGCTATCCGGGGCAGGCCTTCCAGGTGCCCGCGCTCCCCGCCTGTCGTCC
ATTGCTGAGGCTCCAGTGCAATGGCAGCCAGGTGCCCGAGGCTGTCCTAAGGGACTGCTGCCAGCAGCTCGCCCACATCA
G---CGAGTGGTGCAGGTGCGGGGCCCTCTACAGCATGTTGGACAGCATGTATAAGGAGCATGGCGCGCAGGAGGGACAG
GCAGGGACAGGAGCGTTCCCACGCTGCCGGAGGGAGGTGGTGAAGCTGACGGCGGCGAGCATCACAGCGGTCTGCAGGCT
ACCCATCGTCGTTGATGCGTCCGGAGATGGAGCGTATGTCTGCAAGGATGTGGCCGCATACCCAGACGCCTAGTCAAGCA
AAT-----------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------S----
-----SS----S-SSS-SSSSSSS---S------SS----------S----S--S--S----S---SS--------S-S-
-----S-S-------------S--S-SS-------SS-----S-SSS----S----SS--------S-------S---S-
-S---SS--S----S--------S-SS-------------S---------------------------SS-------S--
--S-----------------SS-SS---S-S--------S------S----S---SSSSS-S-SSSSSS-----------
------------------------SSSS-SSSS------------SS--S------------S-------------S---
SSS-S-----S--------S----S-SS--S----S-----SSS-S----S----SS-SS-SSSS-----S--S-S----
---------S-----------SS--S-------------------------S----S---S---------S---------
--------S-----S--S-------S---S----------------------SS-SS-----------------------
------S-----------------S--S-------S---SS---------------S-S--S--S-S------S-SS---
S-----SS-----------------SSSS----S------S-SS--S--S-S-----SS---S---S-S-S---S--SS-
-S--S---S---------SSSS-----S-----------------------S--S--------------S---S------
SSSS---S----------------S----SS----------SSS--SS-S---S------SS----S--SS-----SS--
-SS-S-S--------------S-S-------S-------S-------S------------S-SS-S-S--------S-S-
S-----SSS-SSSS-------S-----SS----SSS-------S-SSS---------S--S--S----S----------S
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_427
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-------TTCCACCCCGTACCGAAATG-----------------------------------------------------
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>reverse_1789
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----------------------------TTACCAATCACGCATGCCCT--------------------------------
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