>input_sequence_75265
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-------------------ATATATATGCGAGTGCGTCTGGTGCAAGTGTGCATACA-CCACTTTCCTTGTTTGTTCCGT
GAAGAAGTAGATATACTGCATCACATGGGGAGCTGCGCGTCCAAGGACGACATGGCGGCGAGGCCGAGGAACGCGGCGGT
GCACCCGTGCCCATGGATTACGCCGACGACGCTGCCGGCGCCCGGCCAGCGGGTCGCCGTGCGGATGCGCGCCAGCGAGT
TCCGCGCTCTGCATGAAGCCACTGGTAGGGATACCAGCGGCAGAGATGCCGACGCCGGCGTCGGCCGTGCCATCCTGGAC
GGCTGCGTCACCGGTCGGTGGACGTGGTCACCAGCGTCCGCGTCCTACTTT------GCAGGCTAGCCACCCATGCTGCG
CATGCAGTCATGCACA---TAGATGACTTGTGTACATAATAC--TAGTGCATATGAATTCGTCTCTACA-----------
------TACATAGCTTCACAAACCTCCTGATCCATTCGTCTATGTGCGTAT---GTA----GTTGTAATTGAGGAAAGAC
GAATTGGATTTGTGGCACAAATTACATACTCGGTTGGATCATCGCATGGCTTTGAGCCTTTA--ACTTGCGATCCAAGA-
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>chr7B_1_TraesCS7B01G218100
GAAAA---------------------------------------------------------------------------
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-------------------------------------AAAAAGTCTACCTATGCCGACGGCTATGCCGTCGGCATAGAGA
CGGCTAGGTTTTAGGCGGCGGGCGGCGTGCCGCGGATCGCTGACGTGGCATGTATGCCGACGGCAGCCGTCGGCTTAGCT
CATGGACGGTGCGCCGCGGATCTGTGACGTGGCATGACGATATATGCCGACGGCCGGCCGTCTAGGCCGTCGGCATAGAT
TTGACGACGTTAGCCGCTGGTCACGGGCGGGGTTGCCGGGCCCACGGGTATGCCGACGGCTGCTGTCGCCATGTTCGCAG
CTGGGCCGACGACATATGTATGCCAACGGGTGTCGTCGGCTTAGCTCGTGGTAGCCCAACGGCCAAGGTACGCCGACGGC
CAAGACGTGGCTGTCGGCATAGCGCAAAGTAGGCCGACGGCAGCCATCGGCATTGATTTGGCCGTCGGGGTAGGGCCAGT
TTCCGGTAGTGCCCCTACCAGGACGCGTGGTGCCCGCAGCGGGCGGTTTAAGCCTGAGAAAAATTCATCCGTTTTCTACA
ATCTAAACGGTTTTATATTCGTTTACAAAGGGCTAGGACTACTAGTTGCCAACGGGAAAGAAAATGTCGATATATATCTT
GTGTCGA-TATGTAGTCACATATCTCATGCCATATTCAGT----CCGAA-GGCCGGGGGCGTTGCTTGCACACAACAACA
ATTCTATGTTGCTCTGCGCACAAGGAACCGATGGATCGGAAGCAAGGCAAGCAACGAGCAACAACATGGATGCATTATTA
GCATGATCC-AAATTAGACCAGCTCGCGAAAGCTGGTATGAACGACATAATAATCATCATCCTATAGCTAGCTA------
----------GTGTGTGTTTCTTGCCGTCTCCACCCATTCGATCGATCACGCGTAGCGTAGCCATTCTCTTGACGCTTGT
CCAACTCCATGGATTCGGTTGCTTCTTGAATTTGCTTGTGCACATGCATGC----ATGGAGGCCGGCTTCAATTCCTTCA
TCATCTCGCTCGACGCCACATATATATGCGAGTGCGTCTGGTGCAAGTGTGCATACA-CCACTTTCCTTGTTTGTTCCGT
GAAGAAGTAGATATACTGCATCACATGGGGAGCTGCGCGTCCAAGGACGACATGGCGGCGAGGCCGAGGAACGCGGCGGT
GCACCCGTGCCCATGGATTACGCCGACGACGCTGCCGGCGCCCGGCCAGCGGGTCGCCGTGCGGATGCGCGCCAGCGAGT
TCCGCGCTCTGCATGAAGCCACTGGTAGGGATACCAGCGGCAGAGATGCCGACGCCGGCGTCGGCCGTGCCATCCTGGAC
GGCTGCGTCACCGGTCGGTGGACGTGGTCACCAGCGTCCGCGTCCTACTTT------GCAGGCTAGCCACCCATGCTGCG
CATGCAGTCATGCACA---TAGATGACTTGTGTACATAATAC--TAGTGCATATGAATTCGTCTCTACA-----------
------TACATAGCTTCACAAACCTCCTGATCCATTCGTCTATGTGCGTAT---GTA----GTTGTAATTGAGGAAAGAC
GAATTGGATTTGTGGCACAAATTACATACTCGGTTGGATCATCGCATGGCTTTGAGCCTTTA--ACTTGCGATCCAAGAA
CAAAAGGCGCACCATCGGA--------------------GGCAATTCA---GTCCTAAAGCTAACAGGCTTTACCGCCAT
GGA-------TTGGACACTGACAGCGATGTTACCCACTAACACACACGCGCTCG----CTCTCTCACCCATTCTATGTAC
GAATCTTTGGCGTTCTTGGACGAACCGTGTGGTAGGTGCATGCATGGCCGCCAG-CACGCGGCACCTGCGACGCA-----
--------TACATTTTTGTCCAAGGAATCTCTATATCTT--GTCCGATTGCCATCACGCCAAACGCAACTAAAATA----
TGTCGTTAACAGGTTAGTTTCGGAGCTGGACTAGATAAATCCTAGATCTGTCCGCATGCATGTGCATGAACCGACCGACA
CATCACCGGTCTCGATCTTTTCCTAGTCTCATCTGCCCCCGGTCACCAGACGCATATTTGTGATCTATGGATGCATGTGT
GTGCTCTAAACTCCGATCCAGCTGCCATGCGTTTACAGCCGGGTGACCCGAATCCGTCTTAAACACGGTCCAGTCAAAAA
AAAAAAAATCAACCAGACGGACACCTCAAACGCCCAGTCTGACCGACAACCCTTAGACCCAGCTTAAATTGGGACGGATA
TAGGCGCCTGGGTGTGTCCGTTGCGTCGACCCGGCCCACGTTGACCCACCCAACCACACATATATTTCTCCCCATCCGCT
TGCCGGGCCAAATCCTAGCCACTTCACTCCATTTTCCCGACTCCCCTTCACCACCCAAGCTCACCTCCGGTGATCTCCGT
CCGTGTCCGGCACGGCGGACAGCGGATCTGACTTCGACCAGTCCGGATCCGTCGACTAGGGTGTCATCCTGTGCAGGTTG
GAGGAGGCAATGGCCGTCCGCATTGCACTCCGACGATTCCGGGAGGACAGTGCCCGACCGACGGCAGGATATGCCCGGCG
TGACTCCATAGCGTCCGCTCAATGGGCGCTCGGATCCCTCCAGGGCTGGATCATCATGGTCCCTGATGTGATCACCTACT
ATAGGCAAGGCCA
>chr2B_1
AAAAAAAGTCTACCTATGCCGACGGCTATGCCGTCGGCATAGAGACGGCCAGGTTTTAGGCGGCGGGCGGCGTGCCGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAATACAAACTACATATATATTCATATGTATGTTTATATTTAACATGCTACATGTTAGTTTATATA
ATAATACATAAAAAAGCTTAAAAAATACATATGAAAAAAAAAGTCTACCTATGCCGACGGCTATGCCGTCGGCATAGAGA
TGGCCAGGTTTTAGGCGGCGGGCGGCGTGCCGCGGATCGCTGACGTGGCATGTACGCCGACGGCAGCCGTCGGCTTAGCT
CATGGACGATGCGCCGCGGATCTGTGACGTGGCATGACGATATATGCCGACGGCCGGCCGTCCAGGCCGTCGGCATAGAT
TTGACGACGTTAGCCGCTGGTCACGGGCGGGGTCGCCGGGCCCACGGGTATGCCGACGGCTGCTGTCGCCATGTTCTCAG
CTGGGCCGACGACATATGTATGCCGACGGGTACCGTCGGCTTAGCTCGTGGTAGCCCGACGGCCGAGGTACGCCGACGGC
CAAGACGTGGCTGTCGGCATAGCGCAAAGTAGGCCGACGGCAGCCGTCGGCATTGATTTGGCCGTCGGGGTAGGGCCAGT
TTCCGGTAGTG---------------------------------------------------------------------
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>chr7D_570
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-----------------------------------------CTACTTGCCAAAGGGTAAAAAA---TCAATATATACCTT
GGTGTGAGTATGCAGTCACATATCTCATCTGTGCTGCAGTCAGCCCGAACGGCCGGGAGCGTTGCTTGCACACAACAGCA
ATTTGCAGTTGCTCTGCGGACAAGGAACCAATGGATCGGAAGCAAGGCAAGCAGCGAGCAACAACATGGATGCATTATTA
GCATGGTCCAAAATTAAAGCAGCTAGCCAAAGCTGGTATGAAGGACATAATAATCATCATCGTATGGCTCGCTAGTCCGC
TAGTGTGTGTGTGTGTGTTTCTTGCCGTCTCCACC-ATTCGGTCCATCACGCGTAGCGTAGCCATTCTCTTGACGCTTGT
CTAACGCCATGGATTCGGTTGCTTCTTGAGTTTGCTTGTGCACATGCATGGAGTGATGGAGGCCGGTTTCAGTTACTCCA
TCATCTCGCTCGACGGCACATATATATGCGAGTGCGTCTGGTACAAGTGTGCATACACCCACTTTCCCGGCCTGTTCCGT
GAAGAAGTAGATATACTACATCACATGGGGAGCTGCGCGTCCAAGGACGACATGGCGGCGAGGCCGAGGAGCGCGGCGGT
GCACCCGTGCCCGTGGATTACGCCGACGGCGCTGCCGGCGCCCGGCCAGCAGGTCGCCGTGCGGATGCGCGCCAGCGAGT
TGCGCGCTCTGCATGAGGCCGCTGGTGGGGATACCAGAGGCGGGGACGCCGACGCCGGCATCGGCCGTGCCATCCTGGAC
GGCTGCGTCGCCGGTCGGTGGACGTGGTCACCAGCGTCCGCGTCCTACTT------GGCAGGCTAGCCACCCATGCTGTG
CACGCAGTCATGCACATACTAGACGACTTGTGTACATAATAC---AGTACATATGAATTCGTCTCTGTA-----------
------CACATAGCTTCACAAACCACCTGATCCATTCGTCTCTGTACGTAC---GTACTCGGTTGTAATTAAGGAAAGAC
GAGTTGGGTTTGTGGAACAGATTACACATTCGGTTGGATCATCGATCGCATGG----CTTTG--ACTTGCGGTCCATGTA
CAAAAGGCGCACCATCGGATTCCAATGAGGCAGCTGGGAGGCAATTCA---GTCCTAAAGCTAACAAGCTTTATCGCCAT
GGATTGGACTTTGGACACTGACAGCGATGTTACCCACTAACACACACGCGCGCGCGCTCTCTCTCACCCATTCTATGTGC
GAATCTTTGGCGTTCTTGGACGAACTGTGTGGTAGGTGCATGCATGGCCGCCAG-CGCGCGGCACCTGCGGCGCA-----
--------TCCATTTCTGTCCAAGGAATCTCTATATCTT--GTCCGATTTCCAGCACGCCAAACGCAACTAA--TA----
TGTCGTTCACAGGTTAGTTTCGGAGCTGGACTAGATAAATCCTAGATCTGTCCGCATACATGTGCATGAACCGACCGACA
CATCACCGGTCTCGATCTTTTCCTGGTCTCATCTGCCCCCGGTCACCAGACGCATATTTGTGATCTATGGATGCATGTGG
GCGCTCTAAACTCCGATCCAGCTGCCATG---------------------------------------------------
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>chr7A_639
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-------------------------------ATATGTAGT----CCGAACGGCCGGGAGCGTTGCTTGCACACAACAACA
ATTCTAAGTTGCTATGCGCAAAAGGAACCGATGGATCGGAAGCAAGGCAAGCAACGAGCAACAACATGGATGCATTATTA
GCATGATCCAAA-TTAAACCAGCTAGCGAAAGCTGGTATGAACGACATAATAATCATCACCCTATAGCTGCTAGTGCT--
-------------TGTGTTTCTTGCCGTCTCCACCCATTCGATCGATCACGCGTAGCGTAGCCATTCTCTTGACGCTTGT
CCAACGCCATGGATTCGGTTGCTTCTTGAGTTTGCTTGTGCACATGCATGC----ATGGAGGCCGGCTTCAATTCCTTCA
TCGTCTCGCTCGACGGCACATATATATGCGAGTGCGTCTGGTACAAGTGTGCATACA-CCACTTTCCTTGTTTGTTCCGT
GAAGAGGTAGATATAC---ATCACATGGGGAGCTGCGCGTCCAAGGACGACATGGCGGCGAGGCCGAGGAGCGCGGCGGT
GCATCCGTGCCCGTGGATTATGCCGATGGCGCTGCCGGTGCCCGGCCAGCGGGTCGCCGTGCGGATGCTCGCCAGCGAGT
TGCGCGCTCTGCATGAAGCCACTGGTAGGGATACCAGCGGCGGGGACGCCGACGCCGGCATCGGCCGTGCCATCCTGGAC
GGCTGCGTCGCCGGTCGGTGGACGTGGTCACCAGCGTCCGCGTCCTACTTGGCATTGGCAGGCTAGCCACCCATGGTGTG
CAAGCAGTC------------------TTGTGTACATAAATACGTAGTACATATGAATTCGCGAAAGAAAGAAAAATACT
TGTATGCACATAGCTTCACAAACCACCTGATCAATTCGTCTCTGTACGTACGTAGTA----GTTGTAATTATGGAAAGAC
GAGTTGGATTTGTGGAACAGATTACATGTTCCGTTAGTTCATCGCATGGCTTTGAGTACTTGCGACTTGCGACCCATGTA
CAAAAGGCGCACCATCGGATTCCAATTAGGCAGCTAGGAGGCGATTCATCAGTCCTAAAGCTAACAAGCTTTATCGCCAT
GGATTGGACTTTGGACACTGACAGCGATGTTACCCACTAACACACACGCGCG---GCTCTCTCTCACCCATTCTATGTGC
GAACCTTTGGCGTTCTTGGACGAACTGTGTGGTAGGTGCATGCATGGCCGCCAGGCGCGCGGCACCTGCGACGCATAAGT
AGCAGGAGTACATTTTTGTCCAAGGAATCTCTATATCTTTTGTCCGATTTCCATCACGCCAAACGCGACTAA--TACTTA
TGTCGTGAACAGGTTAGTTTCGGAGCTGGACTAGATAAATCCTAGATCTGTCCGCATGCATGTGCATGAACCGACCGACA
CATCACCAGTCTCGATCCTTTCCTGGTCTCATCCGTCCCCAGTCACCAGACGCATATTTGTGATCTACGGATGCATGTGT
GCGCTCTAAACACCGATCCAGCTGCCATG---------------------------------------------------
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>SNPs
S-------------------------------------------------------------------------------
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S---S-------------------------------------------------S-------------------------
--------S-----------------------------------------------------S-----------------
---------------------------------S------------------------------------------S---
------------------------S------SS------------------------S------S---------------
---------------------------------------------S----------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------S---S--S---SSS--S-------S---
-SSSS-------S---------------SSS----S---------------------S----------------------
------S-------------------------------------------------------------------------
----------------S-------S--------------------------------------------S----------
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-----S-----------------------S--------------------------------------------------
---------------S--------------------------S-------------------------------------
-----------------S----------------------------------------------------S---------
------------S---------------S---------------------------------------------------
-S---------------------------------------S-S--S------------S--------------------
---------S----------------------------------------S---------------------------S-
--S--------------------S------------------------S-----------------SS------------
------S-----------------S----------------S---S----S-------------------S---------
--S------------S---S--------S---------------------------S----S--------------S-S-
------------------------------------------------------------------S------S------
---------------------------------------------------S--------------------------S-
-------------------------S------------------------------S-----------------------
-------------------------------------------------S----------------------SS------
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------------------------S-------------------------------------------------------
-S---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_375
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-----------------------------------ATCGCTGACGTGGCATGTAT-------------------------
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>reverse_2490
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---------CAACCAGACGGACACCTCAA---------------------------------------------------
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