>input_sequence_75257
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATGGGCTCCTACCGCTACAGCTCCGCCTCGCAGT
TCTTCTTCGCCGCCGGCGAAG------CCGGCCCCGGCCCCGCCGCGCGCAAGCCCGCCAGAACCGTGCGGATCCCCGTC
ACCACGCCTCAGGACGCGGCGGCCGCCAGGATCCAGGCGGCGTTCCGGAGCCGCCGGGTCCGGAGGCACGTCGCGGCCGT
GCGCTCCGCCGACGCCGAGGCGACGCGGCTCGAGCGGCTGCTCCGGCGGCAGGAGACCGTGGACGCCGTCCGCGGCGACG
ACCGCGAGCGCGCGCGCTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGCCACGACCCGGCC
GTGCGGGAGGCCCGGCGCGCCGTCAGCCGCCGCGTCGTCGGCCTCCAGGAGGTGTTCGACTCCGTGCTCGCGGCGCCCGA
GGCCGACACCTACGGCGTCCCGGCGAGCCTGGCCCAGGTTCTCGAGGGGATCTGGGGCATCGGAGAGGCGCCGGTTGCGC
CGCCGCCGCCGGCGGT---GGCCGCGGAGGAGGAGGCGAGGAGGAGTGGCTGGGGCAGGTTTTTCGCGGTACTTTAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr6D_1_TraesCS6D01G263100
AGAATCAGCAAAACTCGCTACTACAATATGAACTAGGGTTCATGTTCAACACATCCATCATATTGAATCATTCCAAATAA
ACCTAGAATTAACAAAAATTAAAACTACAAGATGAAATCATAGCTTTTTGACTAAAACTATTTGGAGGGACCGAAGGAGC
TTACTTCTCTCGTCGTGGAGCCATCTCGATCCGCAAAAACGATGGAGGAGATGGGGGGGTGCTGGAGGGGATGAGATAGG
CGCCTCCTCCTCTGTTCTTCGGGGCGGTAGGAAGGAAGATGGGGGCTGGATTGGTGGGTGGGCCCCACGGCCTATAACTA
TTCAAAACCTACCGCCGAGGTTGATGGCGGTAGGGTATAACAGCCTACCGCCAGAGACATTGGCGGTAGGGTCGACGGCA
GAGGCGAAAGTCCGTTTACTAGCTGACGTGGATAAGTGGTCTACCGCCGGGGCTTGGTAGGCAGTTATATCCTACCGCCG
TCGCCCCTGACAGTAAGAAAAGGAATCAGACAAAAAAAAATCAAACTAGGGACAAATCCGACTTAATTTGGCCGCACATC
GCCGGTGGCTGGCGAGGCTGATTCTGTTGCATGTGGGGCTGCGGATCACGTTTCCGGATACTTCTCGGGTGTCCTTTCCG
GCCGCTGTTGGGGTTTTCCACCTTTCGGTGCGTCGGGCCGTTGGGTTGTGTCACTCTGCCGGGGTCTCTCGGTGGCCCCC
GTCTGCAGCCACACTGCGCAAGACAATGTATATCCACGGAGC-AAAAGCATATGTATCGAATTCGAGCTAAAGTGGTGCG
GGAAAACCGGAAAAGCCACGGGATTGGGGTAGCACCGTCGCCACCGAAAAAGAGACGAGGAAAACACGCCCTGCCCCCAA
AGAAACACGCCGCAGGCGTGGACCGGACCGCGGGTCTGTGCGACGCCCGGCACCCACAGATCCCACGAAATTGTCCTCCG
CGGCGCACTGA-----ACCTCGCTCCACTGACCCAGGGCGGCCGCCATGGGCTCCTACCGCTACAGCTCCGCCTCGCAGT
TCTTCTTCGCCGCCGGCGAAG------CCGGCCCCGGCCCCGCCGCGCGCAAGCCCGCCAGAACCGTGCGGATCCCCGTC
ACCACGCCTCAGGACGCGGCGGCCGCCAGGATCCAGGCGGCGTTCCGGAGCCGCCGGGTCCGGAGGCACGTCGCGGCCGT
GCGCTCCGCCGACGCCGAGGCGACGCGGCTCGAGCGGCTGCTCCGGCGGCAGGAGACCGTGGACGCCGTCCGCGGCGACG
ACCGCGAGCGCGCGCGCTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGCCACGACCCGGCC
GTGCGGGAGGCCCGGCGCGCCGTCAGCCGCCGCGTCGTCGGCCTCCAGGAGGTGTTCGACTCCGTGCTCGCGGCGCCCGA
GGCCGACACCTACGGCGTCCCGGCGAGCCTGGCCCAGGTTCTCGAGGGGATCTGGGGCATCGGAGAGGCGCCGGTTGCGC
CGCCGCCGCCGGCGGT---GGCCGCGGAGGAGGAGGCGAGGAGGAGTGGCTGGGGCAGGTTTTTCGCGGTACTTTAGCGC
GCGCGCTCCCGCGACTGTGAGATCGTAGTATACCGCGTATAAATACGTGTATCTCGTGGATGCTTACGATCGTAGTATAC
CAAGTGGTACAGTGATGATATATGAACATGGAACGAATACCTACAGTGATATAGATATATTTAGGCTCAGTTCTTTCGTC
AGAATCTAGAATCAGACCCTACCCAGTTTCTCCCACAATCTGTGAGCCTCGTTTGTTTTACAATTCTATTGGGAGAATCT
GATAATCTGGCAAAAGAACTGGCCCATACTCTACTTTGCTGGTGCCTGTGCCTGGTTGCATTTGAACTGGGGATTTTGTT
TGACATTGTACCATTTTGTTGCACTGTTCTTGTGGTTTTATGTTCTCT----CTATTCTATTTTATCCAAAATTCGATAT
GGATCATAGGTC-ATAAGCTCTCATTTTCTGAATCCGGTTGGTTTGATGCTGCCCTGCCAAAATGTTGGCAAACAAACAA
GATTAATGCGTACAAAGGAATCAAAGGATGAATGTAGCTGAATGGAGGTAGACTCATTGGTTTGGCCTTGTGTTTTGTAA
GAATGTCAAAAGGGAAATTGGTTCGGTTCAGAAAATCAGGAAGGCTTCGCAATGCAAAATCGTATCTCGCCGGTTTATGT
AGCTGAGACAAATTCTGGCTTTGGGTTGGCAGTTCACCGAGAACTTACATTTA------------CCGCGTTGGTCAATT
CATATGGAACATGGTCATATTTGTTATGACTCCGTACCCCTCAGTTGTAGCCTCCTCCGACCAAAGCACTAGGGTTTCCT
TGCTTTTCGCCGGCACCGCCGCTGTCCGCCTTGTCTCCTATGGTTCTTAGA-------GGCGCGGTGGATCCCGGCCCTT
GCCGGCGGGAGGCCTCCATTTGTAGATG---TTCTTTTTTAAGTTTTGTTAGGTTTGTCCCATGCTTAGTGTCGAGGGAT
GAACCCAGGGAAGGCAACGGAATCCGGATCCCTTTCAAAAACATCGGGCAGGCAACGCCCCTCA
>chr6A_553
CGG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACATC
GCCGGTGGCGGGCGAGGCTGATTCTGTTGCATGTGGGGCTGCGGATCACGTTTCCGGATACTTCTCGGGTGCCCTTTCCG
GCCGCTGTTGGGGTTTTCCACCTTTCGGTGCGTCGGGCCGTTGGGTTGTGTCACTCTGCCGGGGTCTCTCGGTGGCCCCC
GTCTGTAGCCACACTGCGCAAGACAATGTATATCCACCGAGCAAAAAGCATATGTATCGAATTCGAGCTAGAGTGGTGCG
GCAAAA---------------------------------GCCACCGAAAAAGAGACGAGGAAAACACGCCCTGCCCCCAA
AGAAACACGCCGCAGGCGTGGACCGGACCGCGGGTCTGTGCGACGCCCGGCACCCACAGATCCCACGAAATTGTCCTCCG
TAGCACACTGGACCTCACCTCGCTCTACTGACCCAGGGCGGCCGCCATGGGCTCCTACCACTACAGCTCCGCCTCGCAGT
TCTTCTTCGCCGCCGGCGACCCCGGCCCCGGCCCCAGCCCCGCCGCGCGCAAGCCCGCCAGAACCGTCCGGATCCCCGTC
ACCACGCCTCAGGACGCGGCGGCCGCCAGGATCCAGGCGGCGTTCCGCAGCCGCCGGGTCCGGAGGCACGTGGCGGCCGT
GCGCGCCGCCGACGCCGAGGCGACGCGGCTCGAGCGGCTGCTCCGGCGGCAGGAGACCGTGGACGCCGTCCGCGGCGACG
ACCGCGAGCGCGCGCGCTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGCCACGACCCGGCC
GTGCGGGAGGCGCGGCGCGCCGTCAGCCGCCGCGTCGTCGGCCTCCAGGAGGTGTTCGACTCCGTGCTCGCCGCGCCCGA
GGCCGACACCTACGGCGTCCCGGCGAGCCTGGCCCAGGTTCTCGAGGGGATCTGGGGCGTCGGAGAGGCGCCGGCTGCGC
CGCCGCCGCCGGCGGCAGCGGCCGCTGAGGAGGAGGCGAGGAGGAGTGGCTGGGGCAGGTTTTTCGGGGTACTTTAGCGC
GCTT----CCGCGACTGTGAGATCGTAGTATACCGCGTATAAATACGTACGTGTATTTCGTG------------------
-------------GATGATATATGAACATGGAACGAATACCTACAGTGATATACATATAT--------------------
--------------------------------------------------------------------------------
-------------------------ATACTCTACTTTGCTGGTGCCTGTGCCTGGTTGCATTTGAGCTGGGGATTTTGTT
TGACATTGTACCATTCTGTTGCACTGTTCTTGTGGTTTTATGTTCTCTTTATCTATTCTATTTTATCCAAAATTCGATAT
GGATCATAGGTCCATAAACTCTCATTTTCTGGATCTGGTTGGTTTGATGCTGCCCTGCCAAAATGTTGGCAAACAAACAA
AAATAATGCATGCAAAGGAATCAAAGGATGAATGTAGCTGAATGGAGCTAGACTCATTGGTTTGGCCTTGTGTTTTGTAT
GAATGTCAAAAGGGAAATTGGTTCGGTTCAGAAAATCAGGAAGGCTTCGCAATGCAAAATCGTATCTCGCCGGTTTATGT
AGCTGAGACAAA-TCTGGCTTTGCGTTGGCAGTTCACCGAAAACTTACCCCTCAGCTTATTTTATCCACGTTGGTCAATT
CATAT----------------TGTTACGACTCCGTGCCCCTCAGCTCTAGCCTCCTCTGACCAAGGCGCTAGGGTTTCCT
TGCCTCTCGTCGGCACCGCTGATGTCCGCCTCGTCTCCTATAGTTCTTGGACCATGATGGCGCGGTGAATCTCGACCTTT
GCTGACGGGAGGGCTTCGTTTGTAGGCGGGTTTTTTTTTTAAGTTTTGTTAGGTTTGTCTCATGCT--------------
----------------------------------------------------------------
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---------S-------------------------------------------------------------S--------
--------------------------------------------------------------------------------
-----S-------------------------------S--------------------------------S---------
-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
--------------------------------------------------------------------------------
SS--S-----S--------------S---------------------------------S--------------------
-------------------SS--------------S-------------------------------S------------
-----------------------------------------------S-----------------------S--------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-----------------------------------------------------------S--------
----------------------------------------------------------S---------------S-----
---------------S---------S----------------------------------------S-------------
--SSSSSS----------------------------------------SSS-S-SS-SSS--SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS----------------------------------------S------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S--------------
---------------S----------------------------------------------------------------
-----------------S-------------S---S--------------------------------------------
S-S------S-S-----------------------------------S-------------------------------S
--------------------------------------------------------------------------------
------------S----------S----------------S-------SSS-S--------------S------------
-----SSSSSSSSSSSSSSSS-----S--------S--------S-S----------S------S--S------------
---S-S---S---------S-S---------S---------S------S------------------S---S--S--S--
--S-S-------S--S-S-------SS------S-------------------------S------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_819
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
GGAAAACCGGAAAAGCCAC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>reverse_2596
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CAAAAACATCGGGCAGGCAA---------
