>input_sequence_75250
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-------------------------------------------------------------ATGTCTTGCGCGGCGGCGG
AGGCCGGGCTGGTGGCCATGGACTGCGTGGTGGTGTGCTGCTGCTGCCCGTGCCTGGTGCTGCAGATCACCGTGTTCCTC
TTCGTCCGGCTGCCCCGGAAGGTGGTGGTCAAGTCCAAGAGGGTCTTTCTGCGGCGATGGCACAGGAGGAGGAGGAGGAG
ATCGGCATCCGCCGCCGCGAAGAGGCTCTCCAGAAGCGGCAGCACGGCCTCGTCCTCCGGCATGAGGCGGC---TCGAGG
AGCTGCTGGACGGCGATTTCAGAGCCACCTTCAGGGATATCAACGGAGGGGAGTGCAGCGGCAGCGACGGCGACGTCCGC
GGTAGCTGGAAGGAGAAATGCTTCGCCATGGACGACTACGATGGCGGTGTCGGCTGGAAGCAGAGGTGCTTCGCCGTCGA
CAGCTGCG---ACGACGACGGCGTGTGGGAGGCGCTGGTGGGGCAGGAGGGGCTCTTCTGGTTCGGGAGCTTCTGGGGCC
GGACGGAGCAGGGCGACCCCGTGTCTTCCGAGGATCAGATGTACGCAAGCTTGAGCCTGCCGGTAGTTCTAGAGAGAGTG
CGGGATTAG-----------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G275100
CTTTACAAGAGAACATCACTCTGTTTTATTTTGTCTTGTGGGTTAGGAAGAAGCCTGCTGAACAATCTTTAATTTCCTTT
CTACC---AAAAACATGGATAAAAACATGAAGAGAGGTCATGGAAAGTTTTTAATTCAAGTGTTTGTAATTTTTGTTTGA
AGTGCTCTCTTTTACTCGTATTCAGTGA-GTATGAATTGTGAAATAATATGATGACAGTACATTTCGCTGCATTTTCTCA
TGAGCATTGGTTGAGCCTATCAGATATGTTAGATATGGATCATATCTAGCGCCCCAACCTACACAATGAATCTATATAAT
TTTCCTTTCTCAACCATAGTGATCGGGACTCCCGGAATGACATGAATCTATATAATTTTCCTTTCACAACCATAGTGATC
GGGACTCCCGGAATGACATGAATCTATATAATTTTCCTTTCACAACCATAGTGATCGGGACTCCCGGAATG--ACGCCGA
CTTCATCT-AAAAGGGGAAAGTTTGTCTAC-GCTAGTTGACTGAAACCGCCACATTTCTCATGTTGGATGTCGGTTCTCT
GCAACTGGCAGCTACCCGATCGACTAGTCCA--------AGAATAGCTCTGAAACAGCACCCTTTTTGTTCGACGATACA
CGGAAATCCGTTAACCAATCCACCCCAAGACACAAGAAAGGCCATGCATAGCAGCACGTGATGCACTCACATAATACGCG
TGGGTTGCCCCGACGCGTGCCGCTCGCTTCCTGGATGCGTAGACCAAACTTCGGTACAAGAAACACCTTAGCTCTGGCTG
GCCTAATAAGCGGGGTGGCATGAGTTGGCTTGGAAGAATCAACGAGGGCGACCCCTCAAGTCACTCGA-----GCTGCCG
AAGCAACCCAAAGCCTCCGCCTCACTCTTCCAAGCAAGCCATGCAGTTAGGCTAGCTAAGTAGGCAAGCTCTAGCGGCTG
CCCATTCCTGCGTCCATGCCCTCCCCCTCTCATCCTCCTCGTCGTCGTCCCGCCACCACCGATGTCTTGCGCGGCGGCGG
AGGCCGGGCTGGTGGCCATGGACTGCGTGGTGGTGTGCTGCTGCTGCCCGTGCCTGGTGCTGCAGATCACCGTGTTCCTC
TTCGTCCGGCTGCCCCGGAAGGTGGTGGTCAAGTCCAAGAGGGTCTTTCTGCGGCGATGGCACAGGAGGAGGAGGAGGAG
ATCGGCATCCGCCGCCGCGAAGAGGCTCTCCAGAAGCGGCAGCACGGCCTCGTCCTCCGGCATGAGGCGGC---TCGAGG
AGCTGCTGGACGGCGATTTCAGAGCCACCTTCAGGGATATCAACGGAGGGGAGTGCAGCGGCAGCGACGGCGACGTCCGC
GGTAGCTGGAAGGAGAAATGCTTCGCCATGGACGACTACGATGGCGGTGTCGGCTGGAAGCAGAGGTGCTTCGCCGTCGA
CAGCTGCG---ACGACGACGGCGTGTGGGAGGCGCTGGTGGGGCAGGAGGGGCTCTTCTGGTTCGGGAGCTTCTGGGGCC
GGACGGAGCAGGGCGACCCCGTGTCTTCCGAGGATCAGATGTACGCAAGCTTGAGCCTGCCGGTAGTTCTAGAGAGAGTG
CGGGATTAGGCACCGATGATGATGCAGTTTGATGCAAGCGGCTTGCATTGCAGCTT------CTAAATGAGGTTTCTACT
TTTCCATCCGGCCAAGGATTTTATCCAGAGTAGCAGCTATTACATCATTTGGTCAGTGCACTGACCCCC--------TAC
TGTACATATGTTATCATCATGGTACGCCTATTATCAATCAAAGGAACAATGCCTGAACAATAAACAGCGGGTTTCAGTTT
AATCACTGCAGAGAGACAGATAGAGACCGGAAGAGCAGTCTAGAAATAGTTCGAGTTAAGAACGCTGATCCTTCTCCGGA
CCTGATCCTCGGAGGAAACGGTTATGTAACCAC-------------GCCTTTTGGGGCGGCAAAGCTGTGTAACCACCTC
GTGTTGCTTTGTTCAG-TATACCTGGTTTGGACGTA----------TATACTTTGCCCACCCGGTACGCCCGTGCGTGCG
TTTCGTGGTGCACCTGGACCGCACGTCGTCGCCGCGGTCGGCATCGGTCAATCGGCCG------------------TGAC
AGCAACTTCATCCCGTAGCTGTCT--------------------------------------------------------
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----------------------------------CGCTGATGATTGATTGCTTGTTGCCCGCCAGCTGCA----------
----CGGGCCGAGACGAGGG----GTACGTACAGATCAAGTCACGCAAAACGGACACGCTTGCCTGATGACCACCGCGCT
CTACTCTACCCTAAAGCAGCCGCGATATCAGGCGTACGCGTATGGCGACTCAGATG------------AGCAACTGGACG
AAGATCTCACTGTTCAGGGCCCACCTGCACTGCACGTGCAGCTCCACTCCACGGGCACGGCTTCGGCCCTGCTGCAACTG
C-------------GCCGTACGCCGAATAGCAAGTCGCCTCGGCCGAGGAGATGCCCGCGGTCGCATGCAGAATCCCTCG
TCAGCCGCGCCGCGGATCGCCTTGGCCGAGGAGATCCTCGCGGTCGCGGCAGCCAGAATCCTTCGTAACCCGCGCGCGCG
GACGCTCGCGTCTCATCCGTGCCGATGCCGCGGAAGTGCACCGCGACGCCGACGAGAAGACGCACGCCCCACCCGGCC
>chr6D_1
CTTTACAAGAGAACGGCACTCTGTTTTATTTTGTCTTGTGGGTTAGGAAGAAGCCCACTGAACAATCTTTAATTTCCTTT
CTACCGAAAAAAACATGGATAAAAACATGAAGAGAGGTCATGGAAAGTTTTTAATTCAAGTGTTTGTAATTTTCGGTTGA
AGTGCTCTGTTTTCCTCGTATTCAGTGGTGTATGAATCGTGAAATAATACGATGACAGCACATTTCGCTGCATTTTCCCA
TGAGCATTGCATAAGCCTATCAGATATGTTAGATACGGATCATATCTAGCGCCCCAACCTACACAATGAATCTATATAAT
TTTCCTTG------------------------------------------------------------------------
----------------------------------------CACAACCATAGTGATCGGGACTCCTGTAATG--ATGCCGA
CTTCATCTAAAAAGGGGAAAGTTAGTCTGCTGCTAGTTGACTGAAACCGTCACATTTCTCATGTTGGATGTCGGTTCTCT
GCAACTGGCCGCTACCCGATCGACTAGTCCAAGTGTCCAAGAATAGCTCTGAAACCGCACCCTTTCTGTTCGACGATACA
CGGAAATCCGTTAACCAATCCACCCGAAGACACAAGAAAGGCCATACATAGCAGCACGTGATGCACTCACATAATACGCG
T-GGTTGCCCCGACGCGTGCCGCTCGCTTCCTGGATGCGTAGACCAAACTTCGGTACAAGAAACACCTTAGCTCTGGC--
--CTAATAAGCGGGGTGGCATGAGTTGGCTTGGAAGAATCAACGAGGGCGACCCCTCAAGTCACTCGG-----GCGGCCC
AAGCAACCCAAAGCCTCTGCCTCACTCTTCCAAGCAAGCCATGCAGTTAGGCTAGCTAAGTAGCCAAGCTCTAGCAGCTG
CCCATTCCTCCGTCCATGCCCTCTCCCTCTCCTCCTCC---------TCCCGCCACCACCGATGTCTTGCGCGGCGGCGG
AGGCCGGCCTGGTGGCCATGGACTGCGTGGTGGTGTGCTGCTGCTGCCCGTGCCTGGTGCTGCAGATCACCGTGTTCCTC
TTCGTCCGGCTGCCCCGGAAGGTGGTGGTCAAGTCCAAGAGGGTCTTTCTGCGGCGATGGCACAGGAGGAGGAGGAGGAG
ATCGGCATCCGCCGCGGCGAAGAGGCTCTCCAGAAGCGGCAGCACGGCCTCGTCCTCCGGCATGAGGCGGCGCCTCGAGG
AGCTGCTGGACGGCGATTTCGGAGCCACCTTCAGGGATATCAACGGAGGGGAGTGCAGCGGCAGCGACGGCGACGTCCGT
GATGGCTGGAAAGAGAAATGCTTCGCCATGGACGACTATGATGGCGGTGGCGGCTGGAAGCAGAGGTGCTTCGCCGTCGA
CGGCTGCG---ACGACGACGGCGTGTGGGAGGCGCTGGTGGAGCAGGAGGGGCTCTTCTGGTTCGGGAGCTTCTGGGGCC
GGACGGAGCAGGGGGACCCCGTGTCCGCGGAGGATCAGATGTACGCAGGCTTGAGCTTGCCGGTAGTCCTAGAGAGAGTG
CGCGATTAGGCACCGACGACGATGCAGTTTGATGCAAGCGGCTTGCATTGCAGCTT------CTAGATGAGGTTTCTACT
TTTCCATCCGGG------------------------------CATCATTCGGTCATTGCACTGATGATTCCATTCCTTAC
TGTACATATGTTATCATCATGGTACGCCTAT---CAATCAAAGGGACAA-TCCTGAACAATAAACAGCGGGTTTTGGTTT
AATCACTGCAGACAGACAGATAGTGACCGGAAGAGCAGTCTAGAAATAGTTCGAGTTGAGAACCCTGATCCTTCTCCGAA
CCTGATCCTCCGAGGAAACGGTTATGTATGTAACCACGCCTTTTGGGG----------GGCAAAGTTGTGTAACCACCTC
GTGTTGCTTTGTTCAA-TATGCTTGGTTTGGATGTA-GTATGTATGTATGCTTTGCCCACCCGGTACGCCCGTACGTGCG
TTTCGTCGTGCCCCTGCACTGCACGTCGTTGCCGCGGTCGGCATCGGTCAATCGGCCGGGCGGTTCATGACTACCGTGAC
AGCGACTCCATTCCGTAGCTGTCC--------------------------------------------------------
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----------------------------------AGCTGATGATTG---GCTTGTTGCCTACCACTACAAGCTCCACGAG
TCGTCGAGTCGAGACGAGGG----GTACGTACAGATCAAGTCACGCAAAACTGAGACGCCTGCCTGATGGCCACCGCGCT
CTACT-----CTAAAGCAGCCGCGATGTCAGGCGTACGCGTATGGCGACTTTGGCACGGAAGATGAGCAGCAACCGGACG
AAGATCTCACCGT-----------------TGCACGTGCGGCTCCACTCCACGGGCACGGCTTCGGCCCCGCTAGCCGCG
CCGTGCAGCGCCTTGCCGTACGCCGAATAGTAAGTCGCCTCGGCCGAGGAGATGCCCGCGGTCGCACGCAGAATCCCTCG
GCAGCCGCGCCGCGAATCGCCTCGGCCGAGGAGATCCTGGCGGTCGCGGCAGCCAGAATCCTTCGTGAACCGCGCGCCCG
GACGCCCGCATCTCATCGGTGCCGACGCCG------------------------------------------------
>chr6B_1
CTTTACAAGAGAACGACACTCTGTTTTATTTTGTCTTGTGGGTTAGGAAGAAGCCCGCTGAACAATCTTTAATTTCCTTT
CTGCC--AAAAAACATGGATAAAAACATGAGGAGAGGTCATGGAAAGTTTTTAATTCAAGTGTTTGTAATTTTCCTTTGA
AGTGCTCCTTTTTCCTGGTATTCAGTGCTGTATGG-------AATAATACGATGACAGTACATTTCAGTGCATTTTCCCA
TAAGCTTCGGATGAGCCTATCAGATATGTTAGATACGGATCATATCTAGCACCCCAACCTACACAATGAATCTATATAAT
TTTCCTTGG-----------------------------------------------------------------------
-----------------------------------------ACAACCATGGTGATCGGGACTGCTTGAATGATATGCCGA
CTTCATCTAAATAGGGGAAAGTTTGTCTGCT-CTAGTTGACTGAAACCGTCGCATTTCTCATGTTCTATGTCGGTTCTCT
GCAACTGGCGGCTACCCGATCGACTAGTCCAAGTGTCCAAGAATAGCTCTGAAACCGCACCCTTTCTGTTCGAGGATACA
CAGAAACCCGTTAACTAATCCACCCGAAGACACAAGAAAGGCCATACATAGCAGCACGTGATGCACTCACATAATAGGCG
T-GGTTGCCCCGACGCGTGCCGCTCGCTTCCTGGATGCGTAGACCAAACTTCGGTACAAGAAACACCTTAGCTCTGGC--
--CTAATAAGCGGGGTGGCATGAGTTGGCTTGGAAGAATCAACGAGGTCGACCCCTCAAGTCACTCGAGCCGAGCGGCCC
AAGCAACCCAAAGCCTCCGCCTCACTCTTCCAAGCAAGCCATGCAGTTAGGCTAGCTAAGTAGCCAAGCTCTAGCAGCTA
CCCATTCCTCCATCCATGCCCTCTCCCTCTCCTCCTCCAG---------------CCACCGATGTCTTGCGCGGCGGCGG
AGGCCGGCCTGGTGGCCATGGACTGCGTGGTGGTGTGCTGCTGCTGCCCGTGCCTGGTGCTGCAGATCACCGTGTTCCTC
TTCGTCCGGCTGCCCCGGAAGGTGGTGGTCAAGTCCAAGAGGGTCTTTCTGCGGCGATGGCACAGGAGGAGGAGGAGAAG
ATCGGCATCGGCAGCCGCGAAGAGGCTCTCCAGAAGCGGCAGCACGGCCTCGTCCTCCGGCATGAGGCGCC---TCGAGG
AGCTGCTGGACG---------------------------------------------GCGGCAGCGACGGCGACGTCCGC
GGTAGCTGGAAAGAGAAATGCTTCGCCATGGACGACGATGATGGCGGCGGCGGCTGGAAGCAGAGGTGCTTCGCCGTCGA
CGGCTGCGACGACGACGACGGCGTGTGGGAGGCGCTGGTGGAGCAGGAGGGGCTCTTCTGGTTCGGGAGCTTCTGGGGCC
GGACGGAGCAGGGCGACCCGGTTTCTGCGGAGGACCAGATGTACGCAGGCTTGAGCTTGCCGGTAGTCCTAGAGAGAGTG
CGCGATTAGGCA---ACGACGATGCAGTTTGATGCAAACGGCTTGCATTGCAGCTTCTACTACTAGATGAGGTTTCTACT
TTTCCATCT-GG------------------------------CATCATTTGGTCATTGCACTGATGATTCCATTCCTTAC
TGTACATATGTTATCATCATGGTACGCCTAT---CAATCAAAGGAACAATTCCTGAACAATAGACAGCGGGTTTCAGTTT
AATCACTGCAGAGAGACAGATAGTGACCGGAAGAGCAGTCTATAAATAGTTCGAGTTAAGAACCCTGATCCTTCTCCGAA
CCTGATCCTCGGAGGAAACGGTTATGTAACCAC-------------GG----------GGCAAAGTTGTGTAACCACCTC
GTGTTGCTTTGTTCAATTATCCTTGGTTTGGATGCATGTATGTATGTATACTTTGCCTACCCGGTACGCCCGTAGGTACG
TTTCGTGGTGCACCTGGACCGCACGTCGTTGCCGCGGTCGGCATCGGTCAATCGGCCG------------------TGAC
AGCAACTTCATCCCGTAGCTGTCTTTTTTTTTTCATGGTAATACGTGTCCCATTCATATCATAAAGAACAAAGTACAAGT
CACGTAAAGACCGACATGACAAAACTAAAAATGATGAGGACATGACTACCTTGAATATGACCAAATATATTGCATACATG
TATATTTGTGAGATGTATGGGACATTTGTACAATACACATATGAAGATAAGGGAGAAAGAGATGTTTACTTGCTGTTCAA
AAAGTTCTCTCACGTCACTTTTGGCCCAAGAGAAGATAGAGTCCGAATCTCTCATGTTCTGGACTCAGATTCAGACTGCA
CAGACACACCTAATTCAAAACGCCAAGAACTCTTTCATCCGGACTCCGAATTGGGTGATTTTTTTTTGTTGGAAAGTAGA
TTCATGCTCTTTCCAACCCAATTGGAATCAACTTAAAAACCGCCCGGAGCGTTGAGTTATGGACGAAACAATCTGACACT
GCAGCAGAATCCAAGTCAAATTACAAGTCCAAAGGTGTTACGTCACCTCCACTTGGGCCCATGAGCCTTGTATGACCTAG
GGTTGGTTTTAGGCTGCCTTGGGACGTTCTCCCACCTCCTTGGCCACATCCTTGCTCCTATATAAGTAGATTCATCTAGT
AGCTTTTTCCTTGGGATTTGTTTAGTTAAAAGTTAGCCATTGCAACTTCGTGTACTTCGTTTGTGTCCAACGACCAGACC
AAGACCGCTTACGGATCCCCACCTTTATCAATACTTCATATATACTCGCAATATTCAGATTGCTTTTATCATATTCTTGC
TTGTTCTTATTGCTTGCAGGAATAGACCTTCGTGGTCAGGTTGATTGTGCTCCGGCGTGGTCAATAACCTCTCGGAGTTG
GTTTAGCGATTGCTAAGGCGCAACGTCGTGCACGTTTGTAGTCGGATCGTCAAAGTCATCTTCATCAAATCGATAGTTAT
CATCTCATCGAAAGATAAGGACACCTCCGCCTCTATCAGAAAAGATAGCAGGACATCTCTGAGCTTGACACCAACGCCCG
TCACTGCCTCCGGCACCACCACAGCAACCATCGAAGAAAAGAATGACGAATCACCTCCTCATCCGAGCTCGACGCGGCTC
CATCGCTGATATGCAGCTTTGTGGACCTCCAAGGTGGCTCACCAAAAGTGAAACCCTTACCGTTAAACGAATCAGACCGG
GGCAACACCCCGGACACGCCATCGAACTCCAGATCTGGCACCCCACCACGACTAAAACGCCGAAGGAGGAAACCATATCT
GTCATTCACCAACCACGAGCCCAACACATGCTCCGTCTTCCCGATGTCGTCGATGCAGACCACAATCTGCATCCGTTCCT
GGACTACATCCCAAGCTCCGCGCCGACGCTGGAGCAAACGCCGTCGCAACGGCGGAGCCCGAGGACACATGTCACCACGA
GGATGCCGCCGCCGCCACGCCATCCTTGCTTGAACAGACTGGTTTTCAAATCCATCCCCAACCATAGGACCGATGGCCTC
GTCAGAAAAAGATCTAAAGAATCTTTATTCAGCATTCTCATCGTCGCCGCCGAAGCAAAGACAATGAACAACCTAAAAAC
CTAGACTATAAGAGAGTAAAAGCGATCCACACGCGTGGATCCGGCGACCCCCGTCACCACCGACGATCGAGGTCGCCGGC
AGAGGGGAGCCGCCGGAGAGCGTCCTTGGAAGATCGGCCTCCCCTGGCGGCGGCTAGGGTTCCAGGGAGGAGAGGAAAAC
GCCCGTATAAGGGCTAACCATCCCGTAGCTGTGTAGCTGATGATTGCTTGCTTGTTGCCCGCCAGCTCCA----------
----CGGGCCGAGACGAGGGGTACGTACGTACAGATCAAGTTCCGCAAAACTGACACGCCTGCGTTGTGACCACCGCGCT
CTACT-----CTAAAGCAGCCGCGATATCAGGCGTACGCGTATGGCGACTTTGGCACGGAAGATGAG---CAACCGGACG
AAGATCTCACCGT-----------------TGCACGTGCGGCTCCACTCCACGGGCACGGCTTCGGCCCCGCTAGCCGCG
CCGTGTAGCGCCTTGCCGTACTCCGAATAGTAAGTCGCCTCGGCCGAGGAGATGCCCGCGGTCGCATGCAGAATCCCTCG
TCAGCCGCGCCGCGAATCGCCTCGGCCGAGGAGATCCTCGCGGTCGCGGCAGCCAGAATCCTTCGTAAACCGCGCGCCGA
CG----------------------------------------------------------------------------
>SNPs
--------------SS---------------------------------------S------------------------
-------------------------------------------------------------------------S------
--------S----S-------------S---------S-----------S---------------------------S--
----------S------------------------S--------------------------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S---------S-----
----------------------------S--------------------S------------------------------
---------S---------------------------------------------S---------S--------------
-------------------------S-------------------S----------------------------------
-S----------------------------------------------------------------------------SS
SS-------------------------------------------------------------------------S---S
---------------------------------------------------------------S-----------S----
---------S-------------S-------S------SSSSSSSSS---------------------------------
-------S------------------------------------------------------------------------
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--------------------S-----------------------------------------------------------
-----------S--------------------------S----------S------------------------------
-S---------------------------------------S--------------------------------------
--------------------------S-S------------------S--------S----------S------------
--S-------------S--S---------------------------------------------S--------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--------SSSSS-----------
-------------------------------SSS----------------S-----------------------------
-----------------------S---------------------------------------S--------------S-
-----------------------------------------------SSSSSSSSSSS-------S--------------
---------------S----S-S---------S----------------------------------------S------
-----------------------------S--------------------------------------------------
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----------------------------------S-----------S--------------------S------------
---------------------------------------------------S-------S--------------------
-----SSSSS----------------------------------------SS-SSS------------------S-----
----------S--SSSSSSSSSSSSSSSSS---------S-----------------------------S---SSSSSS-
------------------------------S-------------------------------------------------
--------------S-------S---------------------------------------------S--------S--
-----S---S-------S-------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1000
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--------------------CTCCCCCTCTCATCCTCCTC----------------------------------------
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>reverse_1978
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---------------------------------------------------------CGGCAAAGCTGTGTAACCAC---
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