>input_sequence_75236
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---------------------------------------------------ATGGCCGGCGACGAGCCCCCAACGGCGAC
GGTCGAGGCCCCGACGACGGAGGCGGCGTGCCAGGACCTGGTGGAGATCCTGGAGGAGGGATCGGGCCGGCTGGACATGG
GCCGGTACGTGGACCACGTCCGCGACCTGTCGGCGGGCGCCATCGCTACCTTCGAGGGCACCACGCGGGACCACTTCGAC
GGGAGGCGCGTGGTGGAGCTCCGCTACGAGGCGTACGGGGCCATGGCGCGGCGCCGCCTCGAGGCCATCCTCCGCGAGGC
CCGCGCCGCGCACGCGCTGTGCCGGCTGGCCGTGGCGCACCGCCTCGGGACCGTCCCCGCCGGCGAGGCCAGCGTGTTCG
TGGCGGCCTCGGCCGTGCACCGCGCCGACGCCATGGACGCGTGCCGCTACGTGATCGACGAGATCAAGGCCTCCGTGCCC
ATCTGGAAGAAGGAGGTGTACGACGACGGCGAGGTCTGGAAGGAGAACCGCGAGTTCCTCGACCGCACCGACGCCGAGAA
GAAGGGCAAGCCGGCCGCTGCCGCCGGCCGCGGCGGCGGCGGGTGCTGCGGCAGCAAGGTGAGGGTCAGCTGA-------
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>chr5A_1_TraesCS5A01G191300
CAACTTCCATGTGGGGACTAAACTTTAGTCTCACTCACTCCACTCACATGTGTGCATGAATGGGCCCAAAGAATTTCAGA
ATTTTAGTTGGGCTTTGGGTCAAAGGCCTACTAGCAAAATTCTAACAATAATACCTGTGCAATGTATTCTGTTTGTTTGG
ATTGGTATTTCTATATGTGCAACAAGTTCTATGGTACTACCTCATTTGTGCCAAATTTTGACCATAAATTTAACTAACAA
AATGTTCATGCATGTTATAAAAA-TTATATCATTGAAAACTATGTTCAATTATGAATCCAAAGATTTAATTTTTATTAAG
ATTCACTAAGATTTCATAAGTTAAATCTTTGGTCAAAATTAAGCACAAATTATAAAAAGGGCTAATAAACAAGGACGGAC
GTAGTAGTAA--------AAATTAAATACTTC------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TATTTCATGGTTCACTTCAAACCTTCAAGACAGACATTGGGAGCTGGTT
TCCTCCTTCTCTGCCGGTCAACCCTTTGATTGTTCGTGTAGTTTTAGGTCGTCAATTTGAGAAATTAAATATGTGTTATA
TGTCATGAAAAGTATATCATTAAATTACTACACGAATGTAGTTTCTAAATATATATTTTTTATCATATATAATATATATT
TAGATAGTTAAAATGTCGATCTAGAACTACGTGAATAACTTATTCATTGAGACGAAGGTAGTATTAAGGATGATTGCAAG
TAATCAAGAGGAACTTTGCTATCTCACAGGCTCGCTTGTAGGAGTAGTTTCTTATTCTTGCGCTGTCTTCTCGAATATA-
--TTTTTTAAGTTTGTGCCGCTTGAGACTGAAATCGAATTTAAGAAAATCGCCGGTGCTGGGAGCAGGATGATAAAATAA
GAAAGCCGCGGGGCACTTCCGTGGTTCATCTCCTCTCCTCCACCAAACCTTATCTCGCTGCCTGCACCGACGACTTGGAG
CGGCCGCGCTCCGTGATCCAAGCACCCGAAGCGCCGGCGCAGCTCCCCTCGATGGCCGGCGACGAGCCCCCAACGGCGAC
GGTCGAGGCCCCGACGACGGAGGCGGCGTGCCAGGACCTGGTGGAGATCCTGGAGGAGGGATCGGGCCGGCTGGACATGG
GCCGGTACGTGGACCACGTCCGCGACCTGTCGGCGGGCGCCATCGCTACCTTCGAGGGCACCACGCGGGACCACTTCGAC
GGGAGGCGCGTGGTGGAGCTCCGCTACGAGGCGTACGGGGCCATGGCGCGGCGCCGCCTCGAGGCCATCCTCCGCGAGGC
CCGCGCCGCGCACGCGCTGTGCCGGCTGGCCGTGGCGCACCGCCTCGGGACCGTCCCCGCCGGCGAGGCCAGCGTGTTCG
TGGCGGCCTCGGCCGTGCACCGCGCCGACGCCATGGACGCGTGCCGCTACGTGATCGACGAGATCAAGGCCTCCGTGCCC
ATCTGGAAGAAGGAGGTGTACGACGACGGCGAGGTCTGGAAGGAGAACCGCGAGTTCCTCGACCGCACCGACGCCGAGAA
GAAGGGCAAGCCGGCCGCTGCCGCCGGCCGCGGCGGCGGCGGGTGCTGCGGCAGCAAGGTGAGGGTCAGCTGATGAGTGG
CGGCCGCCGGATCGCGATCACGTGGACGTGCCTTT-TTTTTCCCCTTGTGTTACGAGAGATTTTAGTGGAAGAGAAAGGT
GAAGTTCGAATACAATAATATCTTCACATTTTGTTACACTGCTG---AATGCAAATTCTGTGAGAAAAACAATGTATGCA
GTTCGAATACATACTCACGTTGAAGCAAATCATGTGGTGTGGCAGTATGAGATTTAC-TCCTCG---TACACTCATTTTT
---GTGTAGAGAAATTCACACCATGCATCAGAAC-----CGATATGCTGCTGCCTAAAAATATG-TTGTGAATCAACATA
ACATCAGAACAGATTAGAATTATCTTGTCTCTCCCCGCAAAGAAAAAAGAATTATGTTGTCTCGGCTGAAGAACAGAAAT
CAGATAGCGGCTGATTTGATAGCACCGAGCCAAGATGTCAAATTTCGAACCAGAGCAAACAAACCAAGCGAATTACCTGA
AGTATCAAGACGGTAACATCTCTTGTCTCTTATACACAGTCAAACATGGGCTTTACGAACTAGTGCCTCCGTTCTGATTT
ATTCGTCGTGTCGTGGTTTTAGTTCAAATTTGAATTAAAACCACGACGAGTAAATCAGAATGGAGAGAGTACTACTAATA
CTTATTACATTGTACATCACTTTTTCTTTTCAAAAGTAAGCAGGATCATCAAACCAACATAAAGATTGATGCCTCGTT--
---------------------------TCACACTGACTGCAAATTTGGCGCCCGTCAGTCCGTCTCAGATTGTGATCAAC
AGAGACCTTGGCAGACTCCTTGGCCAATTGAGAGCAATCTTCATAGACTGCTACCATAGGACACCACTGCAGGAATGCCC
CCGTCTCATCACTCGGATCACCTAAGCAATCTGAGCCGTCGACCAGCCTACTGTGCGCCCCGTAGATAGAGCGAGATTAA
CATTCCCATGTGCCCTTTGAATCTGCTCACCATGTGCCATTTGCCAACATTCCCATCAAATATACCAACATGTCACGCT
>chr5B_154
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TGTTTGG
ATTGGTATTTTTATTTGTGCAACAAGTCCTATGGTACTATCTCATTTGTGCCAAATTTTGACCATAAATTTAACTAACAA
AATGTTCATGCATGTTATAAAAAATTATATCACTGAAAACTATGTTCAATTATGAATCCAAAGATTTAATTTTTGTTGAG
ATTCACTAAGATTTCATAAGTTATATCTTTGATCAAAATTAAGCACAAATTATAAAAAGGGATGATAAACAAGGATGGAC
GTAGTAGTAGTAGTAGAGAAAATAAATACTTCCTCATTTCCTAAATATTTGTCATTTTAGAGATTATAAATGGACTACCA
CATACAGATATATATAGACATATTTTAGAGTGTAGATTTACTCATTTTGTTTTGTATGTAGTCATTTGTTAAAATATTTA
AAAAGACAAATATTTAAAAACGAAGGGAGTATATTTCATGGTCCACTTCAAGCCTTCAAGACAGACATTGGGAGCAGGTT
TCCCCCTCCTATGCCGGTCAACCCTTTGATTGCTCAGCGCAGGCAGAGCCACTCGATCTCAATCACACACG---------
--------------------------------------------------------------------------------
-----------------------------------------------------------AGTACTACGAATGATCGCAAG
TAATCAAGAGGAACTTTGCTATCTCACAGGCTCGCTTCTAGGAGTAGTTTCTTATTCTTCCGCTGTCCTCTCGATT-TA-
--TTTTTTAAGTTTCTGCCGCTTGAGACTGAAATCGAATTTAAGAAAATCGCCGGTGCTGGGAGCAGGATGATAAAATAA
GAAAGCCGCGGGGCACTTCCGTGGTTCGTCTCCTCTCCTCCACCAAACCTTATCTCGCTGCCTGCACCGACGACTTGGAG
CGCCCGAGCTCCGTGATCCAAGCACCCCGAAGCGCAG-------CCCCTCGATGGCCGCCGACGAGGCCCCAACC-----
----------------ACGGAGGCGGCGTGCCAGGACCTGGTCGAGATCCTTGACGAGGGATCGGGCCGCCTGGACATGG
GCCGGTACGTGGACCACGTCCGCGACCTCTCGGCGGGCGCCATCGCCACCTTCGAGGGCACCACGCGGGACCACTTCGAC
GGGAGGCGCGTGGTGGAGCTCCGCTACGAGGCGTACGGGGCCATGGCGCGGCGCCGGCTCGAGGCCATCCTCCGCGAGGC
CCGCGCCGCGCACGCGCTGTGCCGGCTGGCCGTGGCGCACCGCCTCGGGACGGTCCCCGCCGGCGAGGCCAGCGTGTTCG
TGGCCGCCTCGGCCGTGCACCGCGCGGACGCCATGGAGGCGTGCCGCTACGTGATCGACGAGATCAAGGCCTCCGTGCCC
ATCTGGAAGAAGGAGGTGTACGACGACGGCGAGGTGTGGAAGGAGAACCGCGAGTTCCTCGACCGCACCGACGCCGAGAA
GCAGGGCAAGCCGGCCGC------------CGGCGGCGGCTGCTGCTGCGGCAGCAAGGTGAGGGTGAGCTGATGAGTGG
CAGCCGCCGGATCGCGATCACGTGAACATGGCTTTCTTTTTCCCCTTGTGTTACGAGAGATTTTAGAGGAAGAGAAAGGT
GAAGTTCGAATACAATAATATCTTCACATTGTGTTACACTGCTG---AATGCAAATCCTGTCAGAGAAACAATGTGTGAA
GTTCGAATACATACTCACGTTGCAGCGAATTATGTGGTGTGGCAGCATGAAATTTAC-TACTCCTCATATACTCATTTTT
TTTGTGTAGAGAAACTCACGCCATGCATCAGAAC-----CGATATGCTGCTGCCTAAAAATCTTCTTGTGAATCAACATA
AGATCAGAATTATG-----------TGTCTCTTCCCGCAAAAAAC---GAATTATGTTGTCTCGGCTGAAGAACAGAAAT
CAGACAGCGGCTCATTTGATAGCACCCAGCCAAGATGTTAAATTTCAAACCAGAGCTAACAAACCAAGTGAATTACCTGA
AGTATCAAGACGGTAACATCTCTT-------ATATACACTCAAACATGGGCTTTACGACCTAGT----------------
----------------------------------------------------------------------------AACA
CTTGTTACATTGTACATCGCTTTTTTTA--CAAAAGTAAACAGGATCATCAAACCAACATAAAGACTGATTCATGTCCAA
AAAACAAACATAAAGACTGATGCCTCGTCACACTGACTGCAAATTAGGCGCCCGTCAGTCCCTCTCAGGTTGTGATCAAA
GGAGACATTGGCAGACTCCTTGGCCAATTGATAGCAATCTTC---GACTGCTACCATTGGACACCAA-----GAATGTCC
CCGTCTCATCATTCGGATCACCTAAGCAATCTGAGCCGTCGACCAGCCTACT-TGCGCCCCGTAGATAG-----------
-------------------------------------------------------------------------------
>chr5D_754
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-----------------------------------------GAGTACTTTCTTATTCTTCCGCTGTCTTCTGGAATGGTA
ATTTTTTTAAGTTTCTGCCGCTTGAGACTGAAATCGGATTTAAG-AAATTTCCGGTGCTGGGAGAAGGGTGATATGATAA
AATAAGAA--GGGCACTTCCGTGGTTCATCTCCTCACCTCCACCAAACCTTATCTCGCTGCCTGCACCGACGACTTGGAG
CGGCCGCGCTCCGTGATCCAAGCACCCGAAGCGCCGGCGCAGCTCCCCTCGATGGCCGGCGACGAGCCCCCAACG-----
----------------ACGGAGGCG---TGCCAGGACCTGGTCGAGATCCTGGACGAGGGATCGGGCCGGCTGGACATGG
GCCGGTACGTGGACCACGTCCGCGACCTCTCGGCGGGCGCCATCGCCACCTTCGAGGGCACCACGCGGGACCACTTCGAC
GGGAGGCGCGTGGTGGAGCTCCGCTACGAGGCGTACGGGGCCATGGCGCGGCGCCGGCTGGAGGCCATCCTCCGCGAGGC
CCGCGCCGCGCACGCGCTGTGCCGGCTGGCCGTGGCGCACCGCCTCGGGACGGTCCCCGCCGGCGAGGCCAGCGTGTTCG
TGGCGACCTCGGCCGTGCACCGCGCCGACGCCATGGAGGCGTGCCGCTACGTGATCGACGAGATCAAGGCCTCCGTGCCC
ATCTGGAAGAAGGAGGTGTACGACGACGGCGAGGTGTGGAAGGAGAACCGCGAGTTCCTCGACCGCACCGACGCCGAGAA
GAAGGGCAAGCCGGCCGG------------CGGCGGCGGA---TGCTGCGGCAGCAAGGTGAGGGTGAGCTGATGA-TGG
CAGCCGCCGGATCGCGATCACGTGAACGTGGTTTT-TTTC-CCCCTTGTGTTACGAGAGATTTTAGAGGAAGAGAAAGGT
GAAGTTCGGATACAGTAATATCCTCACATTGTGTTACACTGCTACTAAATGCAAATCGTGTCAGAGAAACAATGTATGAA
GTTCGAATACATA-TCACGTTGCAGCAAATTATGTGGTGTGGCAAGTAGTATGAATTTTACTCCTGATATACTCATTTTT
---GTGTAGAGAAACTCAGAGCATGCATCAGAACAGAGCCGATATGCTGCTGCATAGCAATCTAAGTTGTT---------
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-----------------------------------GTAAGCAGGGTCATCAAACC-------------------------
------AACATAAAGACTGATGCCTCGTCACACTGACTGAAAATTTGGCGCCCGCCAGTCCCTCTCAGATTGTGATCAAC
ATAGACCTTGACAGATTCCTTGGCCAATTGATAGCAATCTTCATAGACTGCTACCATCGGACACCAA-----GAATGTCC
CCGTCTCATCATTCGGATCACCTAAGCAATCTCAGCCGTCGACCAGCCTACTGTGCGCCCCGTGGATAGAGCGAGATTAA
CAT----------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
----------S---S------------S-----------S----------------------------------------
--------------------------------S-----------------------------------------S--S--
-----------------------S-------S-----------------------------S-S-----------S----
---------S-----------S----------------------------------------------------------
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------------------------------------------S--------S-----------------------S----
---S---S--S---------------------S--SSSSSSSSSSSS-S-SSSSSS-SSSS-SSSS-S-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S-S-----S-----
-------------------------------------S---------------------S----------------S---
--------------S-----------------------------------------------------------------
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---------------------------------------------------------------------------SSSSS
SSSSSSSSSSSSSSSS--------------------------S-----------S-------------------------
----------------------------S-----------------S---------------------------------
--------------------------------------------------------S-----------------------
---------------------------------------------------S----------------------------
-------------------------------------S------------------------------------------
-----------------------------------S--------------------------------------------
------------------SSSSSSSSSSSS----------S-S-----------------------S-------------
-S----------------------S-----S-----------------------------------S-------------
------------------------------S-------------------------S----S---S------------S-
----------------------S-------S--------------S----S--------S---S-----S----------
--------------S----------------------------------------------S-S----------------
-S-------SSSSSSSSSSSSSSSS-------S--------S--SSSS--------------------------------
----S-------S-------------S-----------S-------S---------S-----------S-----------
------------------------SSSSSSS---S---S-------------------S-----SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-
---S--------------S------S-SSS-----------------------------------S----S-S-SSSS--
-------------------------------------------------------------S------------------
-------------------------------S-------------------------S--------SSSSSS-----S--
-----------S--------------------------------------------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_71
---------------------------------------------------GTGCATGAATGGGCCCAAAG---------
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>reverse_2103
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----------------------TCTTGTCTCTCCCCGCAAAG--------------------------------------
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