>input_sequence_75211
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-----------------------ACTCCCTCTCGCATCATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTCTGCATC
AAGACGCCG---TCGTCGGAGGAGGCGGCG---AAGCATCCGGCGGCCGGCGAGGAGTGCTGCGTCTGCCTCTCGAGGAT
CCGCGCCGGCGAGGCCACCAGGCGGCTCCCGTGCGAGCACGCCTTCCACCGGGACTGCGTCGACCGGTGGCTCGCGCTCT
GCAAGCGGACGTGCCCGCTCTGCCGGGTGTACGTCGCCGACGGCAACGGC------AGGCAAGCCGCGGCCAAGCACGCC
GGCGAGGGCGCCCTGGCCGACGACCTCGTCATCTGGTTCTCCACCATGCTCGTCCCAGGGTTCTGAGACAGA---TCGAC
GACGATGTTTCTTTTCGCTCTTCGCTCCTCGTGTTTTCT------------------------CATGACACATGTAGCTA
GGGCTCTAGGTAGCAAACGT------------------------------TCT---------------------------
--TGCAAGTTTTGTATTTGAGGTTTA---TCCCTCTACGAATGTGGGTGTAAATAAGAAGCA-GATCGACCTTCTACTAA
CCTTAATTTTGGATACATATGCATGCTATAGATGTGTAT----------------------TACTCACTGCATGGAAGAT
TGGAAAAA-----A------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G065200
TGAAGACGTCATATAGCTTGTGAGGCAAGAGTTATTCATTATATTTTCGCTCAAGTACATAATAATAAGCCAAACATATG
TAACGCCCTAAAAATGCATTTTTAAAAAGTTTTGCTAAAGTACATCTAGATGTTCTCTAAGTATTGCACATCTAAGTCTC
ATGTCATTGATTTTATGTGAAGATTCATGCGGACATTTTCTTTGCCCTTTTCTTTTTCTTTTTAATTTGATTAAGTCACT
TAGATGTATAATAACTGCATCTAGCTAAGCTTTATTTGGTGTGTCTGTTCTTTGTATTGTTATATGAATCATATGTTAAA
AGACATAATATTCATGATGTAATATTATGTGTAAAGAAATGTAATAAGCACAAGTGAAAGAAAAATGAATAAGGATCAAC
CCATTATTATACTTCTCCACGGGAGTTTCACACACAAAAGAAAAACA------TTTTGAGGTCGTTATGCTTTGGCTTAG
TGCTAGGGGACGCGCCA-TATGTTGGTGCTCTACATTGGTGTGCTACTTGTTTTGACTCATGTACACGAACATTGCCTTG
TGTTATCAGGCGATATCGGTGTCAACTTTATGTCAAGGAAAAAAATATGCGGGCCCTGCAATGGAAATGGACACAGCAAC
TAAT--------------------------------GCTTGTCCCTGCAACACAAAAAAACCCTAATGCTG---TTCATT
TCTTGATTCCTACATTGCTTTTCTCCCCTGAGAGCGACATGCTCCCGGCCGT----GAACGAACGTACGAACCTCCGTCC
GTCCGTCCATGTCTTGTGTGTGTGCAAAATCACTTGCTTTATCCAGGGTTTGGTGGTGCTAAAGAAAATAAAGTTGAAGT
GTAGTGTAGGTGCACCCTCTCCAACGGGGATCTCCCAACACACTCGGACAGTGGCAAGTAGCGTAGCAACCACCCTCACC
AACAAAGCGTCCGCAGCAGCCCA----CCTGACCCCCGACCTAAGACCCCATTACATATGCCCTCCTCTACCCAACACCA
T-------------CTCGATCTCACTCCCTCTCGCATCATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTCTGCATC
AAGACGCCG---TCGTCGGAGGAGGCGGCG---AAGCATCCGGCGGCCGGCGAGGAGTGCTGCGTCTGCCTCTCGAGGAT
CCGCGCCGGCGAGGCCACCAGGCGGCTCCCGTGCGAGCACGCCTTCCACCGGGACTGCGTCGACCGGTGGCTCGCGCTCT
GCAAGCGGACGTGCCCGCTCTGCCGGGTGTACGTCGCCGACGGCAACGGC------AGGCAAGCCGCGGCCAAGCACGCC
GGCGAGGGCGCCCTGGCCGACGACCTCGTCATCTGGTTCTCCACCATGCTCGTCCCAGGGTTCTGAGACAGA---TCGAC
GACGATGTTTCTTTTCGCTCTTCGCTCCTCGTGTTTTCT------------------------CATGACACATGTAGCTA
GGGCTCTAGGTAGCAAACGT------------------------------TCT---------------------------
--TGCAAGTTTTGTATTTGAGGTTTA---TCCCTCTACGAATGTGGGTGTAAATAAGAAGCA-GATCGACCTTCTACTAA
CCTTAATTTTGGATACATATGCATGCTATAGATGTGTAT----------------------TACTCACTGCATGGAAGAT
TGGAAAAA-----ATATTTCAAACTGTATCTCTCGCTGTAAAGCTC------------AGCGCCGCGACTAACGCGTCGC
CTTTAGAGATAAAGAAACAGAAACTTTTGCACGTTCCTAATTTTTAGTCCCGCCTTTTGGAGCACAAAAA-TATTAGCTA
GCGGTGGTTAGCCCATGACCAATTCGACCATATACTCTAATCTTTCCGAAAGTCATGAGAAAATTCTTTTTTTTTTGTAA
CAAGTACTCCCTCTGTCCCATAATATAAGGACGTTTTTGACACTAGTTTTTTTAGGGGGCTAAAAAAGTTAACATTCCAA
TTATCTTGAAACTGATTGTGCATTTATGTCTTCTTTCCTTGCAAAAGAAAG-TTTGACAGTTCGCCGCTGTTTGACCTCA
AGAAGGAAGTGTTTGGCATCATCAAGTGTCTGAACAACTTCAAGTTGTCTAAAATTAATAGGAAGGCCAATGTAGCGACG
CATGAGATTGCTTTTTTTTTTTGCGAGGGGATTGCTAAGTTCACTTTTGATAGTAGATCGGACGGTCTTC-TTTTAATAG
TTGTGTGTGACACTTGCTGTTATGAACGGTTGTAATGACATTTTATTTAAGCACTCTATGGAGAGGTGTTTAAAAAAACC
ATAGAGTTATAGTTGAGAGGCAAAAGATCCTAAAAAAAAACAGTTTTGTGACGGGTCGAAATAGCAATACATACTTGTGT
TAGCAAGTACCCGCAAAAAGAAGTTGTGTTAGCAAGAGAGAACAAAAAAGAATGAAGCTTTACCTTGGATGGTCGCAGGT
GTGAAAAATTTGGGGACAACTATGCCCAGAGAGTAACAACTTGTAATTTGGGACTATGTAACAAACTTTGTTTTCTCTTA
ATTAATGAATGAGGCGAAAAAATTTGACCTGTACACACACTTTCACCCAAGCCAACCCCACGAAACAGCTACATGTCTTG
AGGTCGGATGGCTGGATACACAGTGAGACTTCTTTTTTTTTCGGAAAAACTTTCAATCTATTCATCTTT
>chr2D_362
TAAAAGACATGTG-------------------------------------------------------------------
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---------------------------------------------------------AAAGAAAAGAAACGAGGATTAAC
CCATTTATACT-TGCTCCATGGGAGTTCCACAAAAAAAGAAAGAAAGAAAATGTTTTGAGGTGGTTATGCTTAGGTTTAG
TACTAGGAGACGCGGTCGTATGTTGGTGCTGTACATTGGTGTGCTCCTTGTTTTGACTCATGTACACGAACATTGCCTTG
TGTTATCAGGCGACATCGGTGTCAACTTTATGTCAAGGAAAAAAATATGCGGGCCCTGCAATGGAAATGGACACAGCAAC
TAAT----------------------------TAATGCTTGCCCCTGCAACACAAAAAACA--TAATGTTG---TGCATT
TCTTGATTCCTACATTGCTTTTCTCCCCTGAGAGCGACATGCTCCCGGCCGT----GAACGAGCGTACGTACCTCCGTCC
GTCCGTCCATGTCTTGTGTGTGCACAAAACCACTTGCTTTATCCAGGGTTTGGTGGTGATAAAGAAAATAAAGTTGAAGT
GTAGTGTAGGTGCACCCTCTCCAACGGGGATCTCCCAACACACTCCGATAGTGGCGAGTAGCAACGCAACCACCCTCACC
AACAAAGCGTCCGCACCAGCCCA----CCTGACCCCCGACCTAAGACCCCATTACATATGCCCTCCTCTACCCAACACAA
CACCAGCTCGAC----CGATCTCGCTCCCGCATCAC-CATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTCTGCATC
AAGACGCCG---TCGTCGGAGGAGGCGGCGGCGAAGCAGCCGGCGGCCGGCGAGGAGTGCTGCGTCTGCCTCTCGAGGAT
CCGCGCCGGCGAGGCCACGCGGCGGCTCCCGTGCGAGCACGCCTTCCACCGGGACTGCGTCGACCGGTGGCTCGCGCTCT
GCAAGCGGACGTGCCCGCTCTGCCGGGTGTACGTCGCCGACGGC---GGC------AGGCAGGCCGCGGCCAAGCACGCC
GGCGAGGGCGCCCTAGCCGACGACCTCGTGATCTGGTTCTCCACCATGCTCGTCCCAGGATTCTGAGAC-GA---TCAAC
GATGATGTTCCCTTTGAT----------------------------------TGATGGCCACGCATGGCACATGCAGCTA
GGGTTGTAGGTAGCAAAACGTTTTCGCATATGGATCGTCGGCGAATGGGCTCT---------------------------
--TTCAAGTTTTGTATTCCAGGTTTATCGTCCCTTTACGAATGTGGGTGTAAATAAGAAGCATGATCGATCTTCTACTAA
CCTTAATTTCGGATACATATGCGTGCTATAGATGTGTAT----------------------TACTCACTGCATGGAAGAT
TGGCAAAATATTTCAAACAGTATTTT----TCTCGCTGTAAAGCTC------------A------------ACGCGTTGT
GTTTGGAGATAAAGAAACAGAAACTTTTG-ACGTTCTTAATTTTTAGTCCCGCCTTTTGGAGCACAAAAAATATTAGCTA
GCGGTGGTTGGGCCATGACCAATTCGACC--ATACTCTAATCTTTCCGAAAGTCATGAGAGAATTCA--TTTTTTTGTAA
CGAGTACTTT------------------------------------TTTTTTTGCAGGGCTAAAAATGTTAACACTCCTA
TTATCTTGGAACTGATTGTGCGTTTGTGACTTCTTTCCTTGCAAAATAAAGTTTTGACAGATCACTGCTTGTTGACCTCA
AGAAGGAAGAGTTTGGCATCATCAAGTGTCTGAACAACTTCAAGTTGTCTAAAATTAATAGGAAGGCCAATTTAGTGACA
CATGAGATTG------------------------CTAAGTTTAGTTTTGACAATAAATCAGACGTTCTTCTTTTTAATAG
TTGTGCGTGGCACTTGCTGTTATGAGCAATTGTAATAACATTTTATTTAAGTAATATACGGAGAGGTGTTT---------
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>chr2B_513
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---------------------------------------TGTGCTACTTGTTTTGACTCATGTACAGGAACGTTGCCTTA
TGTTATCAGGCGAGATCAGTGTCAACTTTATGCCAAGGAA--AAATATGTGGCCCCTGCAATGGAAATGGACACAGCAAC
TAATGCTTGTCCCTAATTCAAAAAAAAAAAACTAATGCTTGTCCCTGCAACACAAAAAGAAAAACCCAACGTTATGCATT
TCTTGATTCCTACATTGCTTTTCTCCCCTGAGAACGACATGCTCCCGGCCGCGAACGAACGAGCGAACGTACCTCCGTCC
GTCCGTCCATGTCTTGTGTGCGCACAAGATCACTTCCTTTCTCCAGGGTTTGGTGGCGATAGAGAAAATAAAGTTGAGGC
GCAGTGTAGGTGCACCCTCTCCAACGGGGATCTCCCAACACACTAGGATAGTGG----------------CACCCTCACC
AACAAAGCGTCCGCACCAGCCCAGCCACCTGACCCCCGACCTAAGGCCCCATTACATATGCCCTCCTCTACCCAACACAA
CACCAGCTCGACGCCTCGACCTCGCTCCCGCACCGC-CATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTCTGCATC
AGGACGCCGTCCTCGTCGGAGGAGGCGGCGGCGAAGCGTCCGGCGGCCGGCGAGGAGTGCTGCGTCTGCCTCTCGAGGAT
CCGCGCCGGCGAGGCCACGCGGCGGCTGCCCTGCGAGCACGCCTTCCACCGGGACTGCGTCGACCGGTGGCTCGCGCTCT
GCAAGCGGACCTGCCCGCTCTGCCGGGTGTACGTCGCCGACGGCAACGGCGGCGGAAGGCAGGCCGCGGCCAAGCACGCC
GGCGAGGGCGCCCTGGCCGACGACCTCGTCATCTGGTTCTCCACCATGCTCGTCCCAGGGTTCTGAGAC-GACGATCAAG
GATGATGTTTCTTTTTGCTCTTCGCTCCTCGTGTTTATTTTCTCCTTTGAAATGATGGCGACGCATGACGCATGTAGCTA
GGGTTGTAGGTAGCAAACGT------------------------------TTTCGCATGCGGATCGTCGGCGAATGGGCT
CCTGCAAATTTTGTATTCGAGGTTTATCGTCGCTTTACGAATGTGGGTGTAAATAAGAAGCATGATTGGTCTTCTACTAA
CCTTAATTT-GGATACATATGCATGCATGGTGTGTGTATATATATATATGTGTGTGTATTATACTCACTGCATGGAAGGT
TGGCAAAATATTAATATTTCAAACTTTATCCATCGCTGTAAAGCTCTACTCCGCGACTA------------ACGCGTTGC
CTTTGGAGATAAAGAAACAGAAACTTTTGCACGTTCTTAA-TTTTAGTCCCGCCTTTTGGAGCACAAAAAAATTAG--TA
GGGGTGGTTGGGCCATAACCAATTCGACC--ATACACTAATCTTTCCTGAAAG---------------------------
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>SNPs
-S--SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--SS----SS--SS-----S---
-----SS--SSS-S-----S-------S----S-S---SS--S--SS---------------S---------S--S----
-S-----S------SSS-------------S-------------------------------------------------
-------------S------------------------------------------------------------------
------------------------------------------------------------SSS-----S------S----
--------------------------------------------------------------S------S----------
----------------------SS----------------------------------S---------------------
------------------------------------------------S------S------SSS---------------
---------------S--------------------------------------------------------------S-
S----------------------S-----S-S-SSSS-------------------------------------------
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------------------SS------------------------------------------------------------
-------------------------------------------------------------S------------------
---------------------------------------------------------------------S-------S--
--S------------S--------------------SS------------------------------------------
---S-S--------------------------------------------------------------------------
-----------------S----------------S----------------------------------S----------
---------S----------------------------------------------------------------------
---S---------------------S---------------------------------SSSSSSSSSSSS------S--
----S-------------------------------S-------------------------------------------
---------S-S-----------------SS-----------------------------S-----SSS-----------
-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SSS----------S-------S---S-
--------S------------S---S--S-----------------S-------------S--S-S---SS---------
---------S-------------------------------------------------------------S---S---S
----------SSSSSSSSSSSSSSSSSSSSSSSS-------S-S------S-S--S---S----S---------------
-----S---S---------------S-SS-------S--------------S-S-S--S------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_435
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---------------TCCACGGGAGTTTCACACAC---------------------------------------------
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>reverse_1831
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----------------------------------------------------------------------AACGCGTCGC
CTTTAGAGAT----------------------------------------------------------------------
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