>input_sequence_75209
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------------------------------------------------------ATGCTTCCCAGATCCCAAATGGCCAT
ACAACTCACACTTCTACTCATTTCGTGTAGCCTTTACAGTATGTATTCCTCTTCTTCTTTCTCCACGTCCTCCTCTCTTG
CGTTGCTGGTGCTGGTTATCTCCACCTGCCTCTCCTTGCTCTTCTCGAACCTCAGACAACTGATGAAAACCAGCAGCCAC
AAAACTTCCATGGAGGTTGTTGCTCATCAGGAGAAGAGCACTGTGCCACAAGATGGGGTGTCCGAGGATTCGCCGGTGGA
TTCGGCTGGAAGCCTGTCGGGGTCTTCAGATTGCCAGGTGAGCGAAGAGGGGACTGATGAAGTCTCGGTGTCTGATGATG
ACGACGACGAGAGTCTTATTGAGATCTCCCTTGTTGATGGGTACTATGTGGGGCAAGAGGAGCAATGTCTCTGGAAGAAG
GAGCAAGACCTCCTCGCCGGCTTCCTGCCGGAGTTCGTTCTTGACAGGAGGGACTTCATAGACATCTTGTCGGAGATCAG
TGAGGAGGAAAACATGATCGAGATTGACATTGCAAGGGGCTCCATCAAGTGCGCAAACTTCGGCGTCAAAGCATGA----
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>chr1D_1_TraesCS1D01G261500
GGACAACATAGGATACCATTTATTTTTCAACAGCTGTGATTCTGAGATCTCATCTTGTGCCGCGAAATGACTACTGAAAA
CACTTGAACTATTAGAGAATAGAAGGATACCAAAACTT-CAACATGTTTATGTTGACGACTGACGGTGCCGGGATTATTA
GTGCATCCAGCTCTGTCAGCCAGTTTTAG----TAATCAGTAAACACAAAGCAGCAAGTTGCTGTATTTATCGTAGTACA
TAATTTTGTGACGAAAAGGAGGATTGGAGCAAATCATGAACGTCGGTCAGCTTTAACTGCAGGGGGGAGGGCAAGAGAAA
GGGGGGGA----ATTCATTACGGTCTCACCTTCCATGAAAAAAGGTAGAACGCTGCTTTTGATAAGGTAAAAAA-GAGTG
GAAGAGACGAATTGTCTAGTGGAGGCCCATGTGGTAAACTTTAATTAACCTCATGCACATGGCCATCTTCTTGTTTCACA
CAACCCAACCCTGCCTTGCATGTTGTCATCCTATGGAACCATGGATGGACCACGCCTTAAATATTTCTGTCAAGCAGCAC
TTAACAACTCTCTGACCATGATGCCAAGCCAACAGTTACCTCTTAATAACTTAACCTACAGCTTCACAAAAGGACATGGG
GTGTGCACTGCAGCACTGGTAACAGTTCACCAGAAAGTTTCAGTTTTCTAAGCATTAATTA----ACTGTTGCAGTTACC
TTTACGTCCATCAGTTTCAGATTAAATATTTGCGGCATACGCGTCCTAGATGGTGAGCCCTACTCCTCCTCCCTCTCTGG
TCTCTCTTTTCCTCTTTGTGTCAATTCACAAATCCATTTGATAGACAAGCACACAACCTTTGCTTTCCCTGTGCAGGTTT
GTTATTGTAAAGGAAGCAGCAGCAATTCCTTGTTCCATGCTGTGCCTCATCATGGCTTCTTTCTTCTTTAGCATCGCTGC
ATCATTTGGGCCACTAAAGCCCTTCTTGCCCTTGTGATTGTGAGCAAGTTCTTGATGCTTCCCAGATCCCAAATGGCCAT
ACAACTCACACTTCTACTCATTTCGTGTAGCCTTTACAGTATGTATTCCTCTTCTTCTTTCTCCACGTCCTCCTCTCTTG
CGTTGCTGGTGCTGGTTATCTCCACCTGCCTCTCCTTGCTCTTCTCGAACCTCAGACAACTGATGAAAACCAGCAGCCAC
AAAACTTCCATGGAGGTTGTTGCTCATCAGGAGAAGAGCACTGTGCCACAAGATGGGGTGTCCGAGGATTCGCCGGTGGA
TTCGGCTGGAAGCCTGTCGGGGTCTTCAGATTGCCAGGTGAGCGAAGAGGGGACTGATGAAGTCTCGGTGTCTGATGATG
ACGACGACGAGAGTCTTATTGAGATCTCCCTTGTTGATGGGTACTATGTGGGGCAAGAGGAGCAATGTCTCTGGAAGAAG
GAGCAAGACCTCCTCGCCGGCTTCCTGCCGGAGTTCGTTCTTGACAGGAGGGACTTCATAGACATCTTGTCGGAGATCAG
TGAGGAGGAAAACATGATCGAGATTGACATTGCAAGGGGCTCCATCAAGTGCGCAAACTTCGGCGTCAAAGCATGAGCTT
TGCAGAGGTTTGGTGAAGTTAAAATCATTCTATGAATTGCTCCTGGGCTTTCGTCAGGGCAAGGGAGTAGTAGTAGGTTG
---TACTGGACTACATGTGGTTTATTGCCTTGCCTTTTTTTTTCACAAAGAGCTCAGT-TTCATTAGTGATTCTTCAGTG
GAAGCCTTTGCTGCATCTCTTTCCTTGTACTTTCTGAATGTTGCTATAGAAGAAATAAAGCGCG----------------
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----------------------------TGCACATATTTTGCTCGAATATATTTAAGGAAATAACATGTGTGTGGATGGC
CCTTCTTTTCATACCTAGTGTTTTAGACTTGAGTAGATGCTAATAATTATGTCAGGGCTAGCTATATCAAGCTCAAGGTG
GGGTATACTTAAGTTACTTTATGA---TTAGTGCACTAATACAAAGCTGCATTGCAATTAAAAAACTGAATATGATTTGT
TAGCTACTTGATGTGGTTTTTGAAATTAAGCTCAACCTTTTGTCATTCTGAATAAAAAACTCAAAGAAAAA---------
-GTAGTGGCATATGGTTCAACAATCTAGAATAATCGGTCTTTTAGTTTGTGCTGCTGGGTGCTTTAAGCGGCTGATGTTT
GATTTGGAAAAAGGCTATAAGATCTTCATGATTTGCACCTCTATTACTGTAGTAGCCCTCTAGTGCTGTCCATAACAAAT
GTAGATTTGGGGATCCTTTGTTTATTGGAAGATACTGAGAAGATATAGGAAAACATTTTAGCGTACTACTGTTTTTGTGT
TTTAGGTAACTGAACAAAAGATACACATGAATGCTTATTTTAACTCCACTTTGGATCTTTTTCTCCCTGTTTTAAGTACA
AAAATCAAAGATATTGAGTGTGAACATTTGTA-ATCTGACATGCTGACACTTGACACTTCAGATAAGTGTGCACATGCAT
CCATTCACTGTTGGAAATAGGCAATTTCATGATTAACTAGCGGCTAACGCTCGCCTGTATTGTGGATATTTGCTGCCCTA
TTTTTTGGGGTTGTTTGT
>chr1B_1
GGACAACATAGGATACCATTTTTTTTTCAACAGCGGTGATTCTGAGATCTTATCTTGTTCCGCGAAATGACTACTGAAAA
TACTTGAACTATTAGAGAATAGAAGGATACCAAAACTT-CAACATGTTTATGTTGATGACTGACGGTGCCGGGATTATTA
GTGCATCCAGCTCTGTCAGCGACTTTTAG----TAATCAGTAAACACAAAGCAGCAAGTTGCTGTATTTATCGTAGTACA
TAATTTTGTGACGAAAGGGAGGATTGGAGCAAATCATGAACATCGGGCAGCTTTAATTGCAGAGGGGAGGGCAAGAGAAG
GGGGGGGGGGGGATTCATTACGGTCTCACCTTCCATGAAAAAAGGTAAAACGCTGCTTTTGATAAGGTAAAAAA-GAGTG
GAAGAGACGAATTGTCTAGTGGAGGCCCATGTGGTAAACTTTAATTAACCCCATGCACATGGCCACCCTCTTGTTAAACA
CAACCCAACCCTGCCTTACTTGTTGCCATCCTATAGAACCATGGATGGACCACGCCTTAAATATTTCTGTCAAGCAGCAC
TTAACAACTCTCTGACCATGATGCCAAGCCAACAGTTACCTCTTAATAACTTAACCTACAGCTTCACAAAAGGACATGGG
GTGTGCACTGCAGCACTGGTAACAGTTCACCAGAAAGTTTCAGTTTTCTAAGC----ATTA----ACTGTTGCAATTACC
TTTACGTCCATCAGTCTCAGATTAAATATTTGCGGCATACGCGTCCTACATGGTGAGCCCTACTCCTCCTCCCTCTCTGG
TCTC-CTTTTCCTCTTTGTGTCAATTCACAAATCCATTTGGTAGACAAGCACACAACCTTTGCTTTCCCTGTGCAGGTTT
GTTATTGTAAAGGAAGCAGCAGCAATTCCTTGTTCCATGCTGTGCCTCATCATGGCTTCTTTCTTCTTTAGCATCGCTGC
ATCATTTGGGCCACTAAAGCTCTTCCTGCCCTTGTGATTGTGAGCAAGTTCTTGATGCTTCCCAGATCCCAAATGGCCAT
ACAACTCACGCTTCTACTCATTTCGTGTAGCCTTTACAGTATGTATTCCTCTTCTTCTTTCTCCACGTCCTCCTCTCTTG
CATTGCTGGTGCTGGTTATCTCCACCTGCCTCTCCTTGCTCTTCTCGAACCTCAGACAACTGATGAGAACCAGCAGCCAC
AAAACTTCCATGGAGGTGGTTGCTCATCAGGAGAAGAGCACTGTGCCACAAGATGAGGTGTCCGAGGATGCGCCGGTGGA
TTCGGCTGGAAGCCTGTCAGGGTCGTCAGATTGCCAGGTGAGTGAAGAGTGGACTGATGAAGTCTCGGTGTCTGACGA--
-CGACGACGAGAGTCTTATTGAGATCTCCCTTGTTGATGGGTACTATGTGGGGCAAGAGGAGCAATGCCTCTGGAAGAAG
GAGCAAGACCTCCTCGTTGACTTCCTGCCGGAGTTCGTTCTCGACAGGAGGGACTTCATAGACATCTTGCCGGAGATCGG
TGAGGAGGAAAACATGATCGAGATTGACATTGCAAGGGGCTCCATCAAGTGCGCAAACTTCAGCGTCAAAGCATGAGCTT
TGCAGAGGTTTGGTGAAGTTAAAATCATTGTATGAATTGCTCCGGAGCTTTCGTCGGGGCAAGGGAGTAGTAGTAGGTTG
TACTACTGGACTACATGTGGTTTATTGCCTTGCCTTTTTTT--CACAAAGAGCTCAGTTTTCATTAGTGATTCTTCAGTG
GAAGCCTT-GCTGCATCTCTTTTCTTGTGCTTTCTGAATGTTACTAGAGAAGAAATAAAGCGCG----------------
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----------------------------TGCACATATTTTGCTCGAAGATATTTAAGGAAATAATATGCGTGTGCATGGC
CCTTCTTTTCATACCTAGTGTTTTAGACTTGAGTAGATTCTAATAATTATGTTAGGGCTAGCATTATCAATCTCAAGGTG
GGGTATACTTAAGTTACTTTATACAGGTTAGTGCACTA-TACAGGACCTCATTGCAATTAAAAAACTGAACATGAATTGT
AAGCTACTTGATGTGGTTTTAGAAATTAAGCTCAACCTTTTGTCATTCTGAATCAAAAACTC------------------
------GGCACATGGTTCAACAGTCTAGAATAATCGGTCTTTTAGTTTGTGCAGCTGGATGCTTTTAGCGGCTGATGTTT
GATTTGGAAAAAGGCTCTGAGATCATCATGATTTGCACCTCTATTAGTAGCT------TCTAGTGCTGTTCATAACAAAT
GTAGTTTTGGGGATCCCTTGTTTATTGGAAGATACTGAGAAGATAGAGGAAAACATTTTAGCGTACTACTGTTTTTGGGG
TTTAGGTAGCTGAACAAAAGATACACGGGAATGCTTATTTTAACTCCACTTTGGATTC-TTTCTCCTTGTTTTAAGTACA
AAAATCGAAGATAATGAATGTGAACATTTTTTTATCTGACATGCTGACACTTGACACTTGAGATAAGTGTGCACATGCCT
CCATTCACTGCTGGAAACAGGCAATTTCATGATTAACTAGCGGCTAACGCTCACCT------------------------
------------------
>chr1A_1
GGACAACATAGTATACCATTTATTTTCCAACAGCTGTGATTCTGAG-----ATCTTGTGCCGCCAAATGACTACTGAAAA
CACTTGAACTATTAGAGAATAGAAGGATACCAAAACTTTCAACATGTTTGCGTTGATGATTGCCGGTGCCGAGATTATTA
GTGCATCCAGCTCTGTCAGCCAGTTTTATGTGATAATCAGTAAACACAAAGCAGCAAGTTACTGTATTTACTTCAGTACA
TAATTTTGTGACGAAAAGGAGGGCTGGAGCAAGTCATGAACATCGGGCAGCTTTAATTGCAGATGGGAGGGCAAGAGAAA
GGGGGGGA----ATTCATTACGGTCTCACCTTCCATGAAAAAAGGTAAAACGCTGCTTTTGATAAGGTAAAAAAAGAGTG
GAAGAGACGAATTGTCTAGTGGAGGCCCATGTGGTAAACTTTAATTAACCCCATGCACATGGCCACCCTCTTGTTTCACG
CAACCCAACCCTGCTTTACTTGTTGCCATCCTATAGAACCATGGATGGACCACGCCTTAAATATTTCTGTCAAGCAGCGC
TTAACAACTCTCTGACCATGATGCCAAGCCAACAGTTACCTC-TAATGACTTAACCTACAGCTTCACAAGAGGACATGGG
GTGTGCACTGCAGCACCGGTAACAGTTCACCAGAAAGTTTCAGTTTTCTAAGC----ATTAATTAACTGTTGCAGTTACC
TTTACGTCCATCAGTTTCAGATTAAATATTTGCGGCATACGCGTTCTACATGGTGAGCCCTACTCCTCCTCCCTCTCTGG
CCTC-CTTTTCCTCTTTGTGTCAATTCACAAATCCATTTGATAGACAAGCACACAACCTTTGCTTTCCCTGTGCAGGTTT
GTTATTGAAAAGGAAGCAGCAGCAATTCCTTGTTCCATGCTGTGCCTCATCATGGCTTCTTTCTTCTTTAGCATCGCTGC
ATCATTTGGGCCACTAAAGCCCTTCTTGCCCTTGTGATTGTGAGCAAGTTCTTGATGCTTCCCAGATCCCAAATGGCCAT
ACAACTCACGCTTCTACTCATTTCGTGTAGCCTTTACAGTATGTATTCCTCTTCTTCTTTCTCCACGTCCTCCTCTCTTG
CATTGCTGGTGCTGGTTATCTCCACCTGCCTCTCCTTGCTCTTCTCAAACCTCAGACAACTGGTGAGAACCAGCAGCCAC
AAAGCTTCCATGGAGGTGGTTGCTCATCAGGAGAAGAGCACTGTGCCACAAGATGAGGTGTCCGAGGATGCGCTGGAGGA
TTCGGCTGGAAGCCTGTCGGGGTCTTCAGATTGCCAGGTCAGCGAAGAGGGGACTGATGAAGTCTCGGTGTCTGATGACG
ACGACGATGAGAGTCTTATTGAGATCTCCCTTGTTGATGGGTACTATGTGGGGCAAGAGGAGCAATGTCTCTGGAAGAAG
GAGCAAGACCTCCTCGCCGACTTCCTGCCGGAGTTCGCTCTTGACAGGAGGGACTTCATAGACATCTTGTCGGAGATCAG
TGAGGAGGAAAACATGATTGAGATTGACATTGCAAGGGGCTCCATCAAGTGCGCAAACTTCAGCATCAAAGCATGAGCTT
TGCAGAGGTTTGGT---------------CTATGAATTGCTCCGGAGCTTTCGTCAGGGCAAGGGAGTAGTAGTAGGTTG
TACTACTGGAATACATGTGGTTTATTGCCTTGCCTTTTTTT--CACAAAGAGCTCAGTTTTCATTAGTGATTCTTCAGTG
GAAGCCTT-GCTGCATCTCTTTTCTTGTGCTTTCTGAATGTTACTAGAGAAGGAATAAAGCGCGTGCACATATTTGGCTC
GAAGAGATTTAAGGAAATCATATGTGTTTGCTTGGCCCTTCTTTTCATACCTAGTGTTTTAGACTTGAGTAGATGCTAAT
AGTTATGTCAGGGCTAGCTATATCAATCTCAAGGTGGGGTATACTTAAGTTACTTTATACAGGTTAGTGCACTAATACAG
AACTGCATTGCAATTAAAAAACTGAATATGATTTGTAAGCTACTTGATGTGGTTTTAGAAATTAAGCTCAACCTTTTGTC
ATTCTCAATGAAAAACTGGACATTCATCCAATCAAAGGTAGCGGCATATGGTTCAACAATGTAGAATAATCGGTCTTTTA
GTTTGTGCAGCTGGGTGCTTTTAGCGCTGATGTTTGATATGGAAAAAGGTTATGAGATCTTAATGATTTGCACAGTAGCT
TCTAGTGCTGTCCATAACAAATGTAGTTTTGGGGATCCCTTGTTTATTGGAAGATACTGATAAGATATAGGAAAACATTT
CAGCGTACTACTGTTTTAGAGGTTTAGGGCATGTACAATGGTTGATAAGATAGTCTTATTTTAAGTTTTGCATGTAATTT
AGAGACGACAAAGAAAAATGTCTACAATGGATCATCTCTTAGCCTTATCTTCAATAACTAGCAATTCCTAAAAATGTGGT
GAGACATATTGTGCTAAGAGATCATCTCTTGTCTTATCTTAAATAAGAGAAGACAAGCCTTCTCTTATGAGTTCTCTCTC
CTCCCCCTCATCATTTATCCTACGTGGCACCCCTAAGATAGCACCATTGTACATGCCCTTAGGTAGCTGAACAAAAGATA
CACAGGAATGCTTGTTTTAACTCCACCTTGGATTCTTTCTCCTTGTTTTAAGTACAAAAATTGAAGATAATGAGTGTGAG
CATTTGTAATCTGACATGCTGACACTTGACACATGCACATGCCTCCATTCACTGTTGGAAATAGGCAAAAAAAAGCGGGA
AACAGGGAGGTTTACTATTGTAAGATAATGTCTTTACAATCAAAATTGAGCAACTCAGCAACAAACAAAGGGGCCTCTAG
GAGCCAAACATTGGCCGTTACACCCCTCCTAGCAGCTTGAGCAGGTTCATGAGCTACTCTGTTGCCTCCCCTGTTCACAA
AACTGCACCGAAATTCAGGAAGCTCTGCCACAACATCTCTAATACCTTCCAATTGTGGCTGCCCAATCCATCAATCAGAA
CTTCACAGTCTGACTCCAGGATTGTTCACAAAACAAACAGATTGTGTAACTGATGCCTCCCCCTTGCCCTGGACTCCATC
ATTCCTCAAATGCCATGAGCGCCAAAAAAGGACATTTGCTCGGTTATCAACATTTACTGAATTTAAGAGCACCTGGAGCC
AAAAGAGGGCCCGAATACCTGAACTCCTCTGTGGGCAATTCCCACGCCTCCCTGATTGCTGCTCAGGAGGGGTGTATTTT
TTGTTCAGTTACCTAAACCTCTAAAATAGTAGTGATTCTTCTGTGGAAGCCTTGCTGCATGTCTTTTCTTGTGCTTTCTG
AATGTTGCTATAGAAGAAATAAAGTGCATGCACATATTTTGCTCGAAGATATTTAAGGAAATAATATGTGTGTGCATGGC
CCTTCTTTACATACCTAGTGTTTTATACTTGAGTAGATGCTAATAATTATGTCAGGGCTAGCTATATCAATCTCAAGGTG
GGGTATACTTAAGTTACTTTA--CAGGTTAGTGCACTAATACAGAACTTCATTGCAATTAAAAAACTGAGTACGGTTTGT
AAGCTACTTGATGTGGTTTTAGAAATTAAGCTCAACCTTTTGTCATTCTGAATCAAAAGCTCGGCATTTATCCAATGAAA
GGTAGTGGCATATGGTTCAACAATCTAGAATAATCGGTCTTTTAGTTTGTGCAGCTGGGTGCTTTTAGCGGCTGATGTTT
GATTTGGAAAAATGCTACGAGATCTTCATGATTTGCACCTCTATTAGTAGCT------TCCTGTGTTGTCCATAACAAAT
GTAGTTTTGAGGATCCTTTGTTTTCTGGAAGATACTGAGAAGATATAGGAGAACATTTGAGTGTACTATTGTAACTGATG
TTTAGGTAACTGAACGAAAAATACACAGGAATGCTTATTTTAACTCCCCTTTGGATTC-TTTCTCCTTGTTTTAAGTACA
AAAATCGAAGATAATGAGTGTGAACATTTGTA-ATCTGACATGCTGACACTTGGCACTT---ATAAGTGTGCACATGCCT
CCATTCACTGTTGGAAATAGGCAATTTCATGATTAACTAGCGGCTAACGCTCGCCT------------------------
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>SNPs
--------------------------------------------------S-----------------------------
--------------------------------------------------------S-----------------------
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-----------------------------------------S----S---------S-----S-----------------
-----------------------------------------------S--------------------------------
--------------------------------------------------S--------------S-S------------
-----------------S-S-----S--------S---------------------------------------------
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-----------------------------------------------------SSSS-----------------------
------------------------------------------------S-------------------------------
----S---------------------------------------------------------------------------
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---------S----------------------------------------------------------------------
-S----------------------------------------------------------------S-------------
-----------------S-------------------------------------S-------------S----------
------------------------------------------------------------------------------S-
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-------------------S------------------------------------------------------------
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-------------------------------------------S-S----------------------------------
-----------------------------------------SS-------------------------------------
--------S-------------S-----S-------------S---S---------------------------------
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-----------------------------------------------S----------------S---------S-----
----------------------------------------------------------------------S---------
----------------------SS-------------------S-S--S-------------------------------
S-------------------S--------------------------------S--------SSSSSSS-S---------
----------------------------------------------------S------------S--------------
------------------S---------------------------S-SSSSSSSSSS----------------------
----S------------------------------------------------------------------------S-S
---------------------------S----------------------------SSS-------S-------------
------S------S---------------------------------------------S------------------S-
--------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_466
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----------------------------------------------AACCTCATGCACATGGCCAT--------------
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>reverse_3814
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-----------------------------------------------------AGCCCTCTAGTGCTGTCCAT-------
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