>input_sequence_75196
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----------------------------------------------------------------CCATAAATAGGCCCCC
AGTCTCCCACGT----GAAGCACAAGCTAACAACAAGTTCAAAAGAGAATATTCCAGCGCAGGAACAGCAGCCGGAGGAA
GAAGAAGAAGAAGAAGAGGGAGCGGGTGGTGGTATTC----------TGTTTGAGCGATGGAAGGGCTGATCCCGTTCGT
GATCGACGCGATCAGGAAGAGCCACGCGAGGGACAGCTACCGCTGCGCCTCCTCGGACGGCAGCTCCCACGGGGGCAGCG
GCAGCAGGCGGCACCTCATAGACTACCGGGAGCTGCCGGCCGGAGCGGCCGACGCCGACGCCATCCGCCACCAAGGCCCG
TGGTCGGAGTTTATCCAGGCGCCGGCCGACGTGCGTCCTTCCGAGGAGCACGCCCGGCCGGCCGCCGCGGTCGCCGGGTC
GGCTTATCGCTGGAAATGAGCACGTACGC------------------TTC-ATGTCTCAAGGCGCTTTTGCTTAGTTGTT
AATTACAGCTATTGGATTGGTTTTGTTCATTGTT--TGCCTTAGGCATGTACGCAAAGG-------GATTTCGTGTGGGG
AGCGTCAAGCAGTGGCGTAGCCAGCCCAATACACCAGGGTGGTCCATTA-------------------------------
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>chr2D_1_TraesCS2D01G194500
CGCTAGAGTCTTCCGCAACACGGCTACCGCGATTTCCGTTGTCGTTGCCAAGATCAAAGAGGAAGCCTATCTTTGGGCGC
TGGCTGGAGCCAGGCACCTGAGTACTCTAATGTCGCGAGAGTAGTCCTTTTCTTTTTTTGCCGCTCTACGGCTTATGTCT
AAACCTTCTTCTTAATTAATGAAAATGACAAGTCTTTTGCCTAGTTTAAAAAAAAAGTAACGCTGTGACGCCAGGCAGGC
TTCCAGTGTCTCAAAACCACGTGTTTACCGTGCTTTTCGCTGAGACTTTCGT--------TTATTTATGGCTCATGTAGT
GCGGGTGGTTCGCGTGGTCCGATATTTTCTGCAGAATTGACAGTGGGAAAGCAGGCGAGCGGATAGAATCTA-----CGT
GAGTCTCAGAGCGTCGCACCTCGGATCCTTGAACGCACGTAGGAGAGCTGCAGTTGGTCTCATCGGAAAGCAGCCAGGGA
AGGTTTAACACAAGAGGGAAGGTCAAAAGAATGGCCATGATTTGACCAGGTTCTTCCGGATACGAGTGAGCGTCTACAAT
ACAATTTTGCTAGTTCGCTGACGTAACCTAGTCCCATTTTGCTTTCGTGATCAATCAAATGATTAACGATGGAGAACAGA
AGCTTTACGT----CGGTCCAACATAGACAACAACTACCCCGTACAAGGCAAGGGTAAGGGTCAAAACAGAGCTGCGACC
CCTCTCTCCTCCGCCCGCAGTTGACAGTTCCATCGTGCCCGATTTGGCAAACGTAACGAGACACCGGAGAACACCG--CC
GGGTCGTCAGAAACATGCGTCGGAACGGAACAATACCTTATATA-TAACCATTCAGCACGACGAGGTGGGGAGAGGAGGA
AGGAAGAAGCTTCCCGGATCGCCATCAGTCAAACGCCCACCGGAAAGGGAAAGCGGAGCTGCGGCCGCGACCAG-TAATC
CCGCCCGCGCTCGCTCGCTCGCCGCCAGCCATCAGACGCACGCGCGC---CCGGCCGCTTGGCTCCATAAATAGGCCCCC
AGTCTCCCACGT----GAAGCACAAGCTAACAACAAGTTCAAAAGAGAATATTCCAGCGCAGGAACAGCAGCCGGAGGAA
GAAGAAGAAGAAGAAGAGGGAGCGGGTGGTGGTATTC----------TGTTTGAGCGATGGAAGGGCTGATCCCGTTCGT
GATCGACGCGATCAGGAAGAGCCACGCGAGGGACAGCTACCGCTGCGCCTCCTCGGACGGCAGCTCCCACGGGGGCAGCG
GCAGCAGGCGGCACCTCATAGACTACCGGGAGCTGCCGGCCGGAGCGGCCGACGCCGACGCCATCCGCCACCAAGGCCCG
TGGTCGGAGTTTATCCAGGCGCCGGCCGACGTGCGTCCTTCCGAGGAGCACGCCCGGCCGGCCGCCGCGGTCGCCGGGTC
GGCTTATCGCTGGAAATGAGCACGTACGC------------------TTC-ATGTCTCAAGGCGCTTTTGCTTAGTTGTT
AATTACAGCTATTGGATTGGTTTTGTTCATTGTT--TGCCTTAGGCATGTACGCAAAGG-------GATTTCGTGTGGGG
AGCGTCAAGCAGTGGCGTAGCCAGCCCAATACACCAGGGTGGTCCATTAATAAAAATATTAACATAAGTTATTTATTTTT
TAAAAAAATATTTATTTTACTACATTATATACAAGCTATGGGGAAATTCCAGGGTGGTCCATGGACCACCCTGGCCACCC
CCTAGCTACGCCACTGGCGTCAAGGGGCGCCTTGACATACATTTGTCA--TGTGTCATTGCTTTTCAGTGCGTTCAAATA
TGTGTGTATA--TATGTTTATCAAATAATAAAATGAAAGAACAACGGATTGGTGATCCAGCGGTCAACCCGTGATGTGCA
GGACTGATTTCATAAGCCAGAAAATAGCTTGTGCACCTCGCGCATGCAAGCTCTGCTCCGCTCATCTCTCGCATTTACCG
GCGTTGCTGGTCAGAAGTCAAACAAAGTTATCCCGGACACTGCAGG--------TGCCCGCATGCAGGATCTGCAAAGGC
AGAAG-AATTCTTGATGCAAGGATCGATCCTTCTT------------TTCCTGGAGAAACCCTGGTTCGCGTACTGTTGC
AGTACCAGAGCTACGCTGGAGGCCGACGTTACTCGGGCTCTGTTTCTTC-----------TACGTGCATGCCCATGCAGC
GCCGCAGGCTCAACTGCTCATCGCCGTTTACCCGTCTGCGGCGGCGCAGTACGTACGTAG----TGACGTCCGACGAGCA
GGTCGCTGTTCGGCTTTCGCTCCCGCTGAAACGGCCATCAATTTCGGCTTCAATGCCGCGTCTCGTACGCCGTGCAATCT
TCGATCGTCGGAAGATATATAGCAGAGACAGAGTCGATTCCCGTTGGAAGCACTGCATGGTAAGGCTATATGGTCAGTGA
AATGCTCGTTTCAGACCGATAGGAAGAACCGCAGATTTTTTGTCCAGAAGGACCCCTGGCGAACAGAATTGTCAAAAAGG
ACCACTCAGCGAAAACTTTGATAAAAGGGACCTCCTCGACCGTGGCGGCAAGCGCGGCAGACGACATGTGTCACCTGCCG
CCACGCCTGCAGGCGGCGAGCCGGCTAAAACGTGAATCACACAGTGCGC
>chr2A_249
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--------TCTCAAAACCACGTGTTTACCGTGCTTGTCGCTGAGATTTTCTATAGGAGTATTATTTATGGCTCATGTAGT
GCACGTGGTTTGCGTGGACCGATATTTTCTGCAGAATCGACAGTGGGAAAGCAGCCGAGCGGATAGAATCTATAGTACGT
GACTCTCCGAGCGTCGCACCTGTGATCCTTGAACGCACGCAGGAGAGCTGCAGTTGGTCTCATCGGAAACCAGCCAGGGA
AGGTTTAACGCAAGAGGGAAGGTCAAAAGAATGTCCGTGATTTGACTAGGTTCTTCCGGATATGAGTGCGCTTC-----T
ACAATTTTGCTAGCTCGCTGACGTAACCTAGTGATTGAC--------------------------------GATAACAGA
AGCTTTATTTACAGCGGTCCAACATAGACAACTACGTACCCCGTGCCTAAATAGGTGTGCTGCTACAAGG----------
--------------------------------TCGTGCCCGATTTGGCAAACTTAACGAGACTCCGGAGAACACCG--CC
GGGTCGTCAGAAACATGCGTCGGAACGGAACAATACCT-----AGTAACCACCCAGCACGACGAGGTAGGGAGAGGAGGA
AGGAAGAAGCTTCCCGGATCGCCGTCAGTCAAACGCACACCGGCAAGGGAAAGCGGAGCTGCGGCCGCGACCAGATAATC
CCGCCCGCGCTCGCTCGCCCGCCGCCAGCCATCAGACGCACGCGCGCGCCCTGGCCGCTGGGCTCCATAAATAGGCCCCC
AGTCTCCCACGTGACAGAAGCACAAGCTAACAACAAGTTCAAACGAGAATA-TCCAGCGCAGGAACAGCAGCCGGAGGAA
GAAGAAGAAGGAAG---------GAGAGT--GTATTTTTGTA----TTGTTTGAGCGATGGAAGGGCTGATCCCGTTCGT
GATCGACGCGATCAGGAAGAGCCACGGGAGGGACAGCTACCGCTGCGCCTCGTCGGACGGCAGCTCCCACGGCGGCAGCG
GCAGCAGGCGGCACCTCATGGACTACCGGGAGCTGCCGGCCGGAGCGGCCGACGCCGACGCCAGCCGCTACCAGGGCCCG
TGGTCGGAGTTTATCCAGGCGCCGGCCGACGTGCGTCCTTCCGAGGAGCACGCCCGGCCGGCCGCCGTGGTGTCCGGGCC
GGCTTATCGCTGGAAATGAGCACGTACGCACGCAGGC---GGTGCCTTTCAAAGTCTCAAGGCGCTTTCGCTTAGTTGTT
AATTACAGCTGTTGGATTGGTTTTGTTCATTGTTTTTGCCTTAGGCATGTAAGGAGGGGATTTCGTGATTTCGTGTGGCG
AGCGTCAAA-----------------------------------------------------------------------
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------------------------GGGCGTCTTAACGTACACATTTGCCGTGTGTCATTGCTTTTCAGTGCGTTCAAACA
TGTGTGTATAAATATGTTTATCAA---ATAAAATGAAAGAACAACGGATTGGTGATTCAGTCGTCAATCACTGTGTGTGT
AT-CTGATTTCATAAGCCAGAAAATAGCTTGTGCACCTCGCGCATGCAG-----GCTCTGCTGGTCTCTCGCATTTACCG
ACACTGTTGGTCAGAATTCGAACAGAGTTATCTTGGACACTGCAGG--------CGCCCGT----AGGATCTGCCCACGC
AGAGGAAATTCTTGTTGCAAGGATCGACCCTTCTT------------TTTCTGATGAAACACTGCCCCGCGGACTGCTCC
TGTACCCGTGGAATCGCTGGAGCCGACGTTACTCGGGCTCTGTTTCTTC-----------TACGTGCATGCCCATGCAGC
GCTGCAGGCTCAACTGCTCATCGCCGTTTACCCGTCAGCGGCGGCGCAGTACGTACGTACCTACTGACGTCCGACGAGCA
GGT-----------------------------------------------------------------------------
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>chr2B_760
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--------------------------------------------------------CGAAACACCGGAGAACTGAACACC
AGGTCGTTTGAAACATGTGTCGGAACGGAACAAAAACCTTACCAGTTACCACCCAGCACGACGAGGTAGGGAGAGGAGGA
AG----AAGCTTCCCGGATCGCCATCAGTCAAACGCCCACCGGTAAGGGAAAGCGGAGCTGCAGCCGCGACCAGATAGCC
CCACCCG----CGCTCGCCCGCCGCCAGCCATCAGACGCACGCACGCGCCCCGGCCACTTGCCTCCATAAATAGGTCCCC
AGTTCCCCGGTGACAG------------AAGCACAAATTCGCAAGACAATA-TCCAGCACAGGAACAGCAGCCGGAGGAA
GAAGAAGAAGGAAG---------GGGTGGTGGTATTTTTGCAAACTTTGTTTGAGCAATGGAAGGGCTGATCCCGTTCGT
GATCGACGCGATCAGGAAGAGCCACCAGAGGGACAGCTACCGCTGCGCCTCGTCGGACGGCAGCTCCCACGGCGGCAGCG
GCAGCAGGCGGCACCTCATAGACTACCGGGAGCTGCCGGCCGGCGCGGCCGACGTCGACGCCAACCGCCACCAAGGCCCA
TGGTCGGAGTTTATCCAGGCGCCGACCGACGTGCGTCGCTCGGAGGAGCCGGCC------GCCGCCGTGGTCGCCGGGTC
GGCTTATCGCTGGAAATGAACACG-----ACGCAGGCGTTGGTGCCTTTC-AAGTCTCAAGGCACTTTGTT---------
--------CTATTGGATTGGTTTTCTTCACTGTT--TGCCTTAGGAATGTAAGCAGGGATTTCGT---TTTCGTGTGATG
AGCGTCAAA-----------------------------------------------------------------------
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------------------------GGGCGTCTTTGC------------------------------------------CA
TGTGTGCATA--TATGTTTGTCAAATAA--AAATGAAAGAACGACGGATTAGTTACCATGGCGCTC--------------
-------------------------------TGCACCTCGCGCATGCAGTGCAGGCTCTGCTCACCTCTCGCATTTACCG
ACGCTGTTGGTCAGAACTCAAACAGAGTTACCTTGGACAGACACTGCAGGTACCCGTCCGT----AGGATCTGCTCACGC
AGAAGAAATTCTTGATGCAAGGATCGATCCTTCTTCTTTTTTTTTTTTTTTTGAAGAAACCCTGTCCCGCGTACTGTTCC
TGTACCCGCGGAATCGCTGGAGCCGACGTTACTGAGGCTCTGTTCACGCTCTCTTTATCTTACGTGCATGTCCATGCAGC
GCCGCAGGCTCAACTGCTCATCGTTGTTTATCCATCTGCGGCAGCGTAGTACGTAC--------TGACGTCCGACTACCA
GGCCGCTGCTCGCTTTCGT-TCCCGCTGAAACGGCCATCAATTTCGGCTTCAATGCCGCGTATCGTACGCCGTGCAATCT
TCCACCGTCGGAAGAT----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS---------------------------S---------S----SS----------------------------
--SS------S------S-------------------S----------------S-------------------------
--S----S-------------SS----------------S-----------------------------S----------
---------S-----------------------S--S---------S---------------S-----S--S--SSSSS-
-------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------
-------SS-----------------------S--SSS---SSSSSSSSS-SS---SS-SSS-S-S-SS-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S---------------------------
---------------------------------------SSSS--------SS--------------S------------
-------------------------------------------S------------------------------------
------------------S-------------------------------------------------------------
---------------------------------------------------S----------------------------
----------S-SSSSSSSSSSS-------------S-------------------------------------------
--------------------------S------------------------S--------------------S-------
---------------------------------------------------------------S----------------
-------------------------------------------------------------------S------------
----------------------------------------------------S---------------S-----------
---------------------------------------------------S---SS---------------------S-
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-----S---S--S----SS-S-SS------------------------------S-
------------------------------------------------------------SS-----S-SS--SSSSSSS
SSS---------------------------------------------SSSSSS----S---------------------
S--S--S---------S-------S-------SS--------------------S-----SSSSS---------SS-S--
-------------------------------------------------S---S----------SSS-----------S-
S-----S-S-SS-SSSSS-SS-----------------------------------------------------------
-----------------------------------------------------------S--------------------
--------S---SS--SSSS-----------------------------------------S------------------
--S-S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_331
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-----------------------------------------------------------------------TCATGTAGT
GCGGGTGGTTC---------------------------------------------------------------------
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>reverse_2134
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-----------------------------------------------------GAGAAACCCTGGTTCGCGTA-------
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