>input_sequence_75164
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-----------------------------------------------ATG---------GCGGCCGCGGCCACGATCCTC
GAGTTGGACCCTTCACACGAGCGCGCCGGCCGCGTCATCGACGACATCGTGCGGCTGGAGAAGAGGATCTTCCCGAAGCA
CGAGTCGCTGGCGCGCTCGTTCCACGACGAGCTCAAGCGCCGGAACACCGGCCTGATCTACTCGACGTCCGGCGTCGGCG
ACGACGAGGAGGTCGCCGGCTACGCCATGTACACCTGCGCCACCTCCCTCTGCGCCTCCATCACCAAACTCGCCGGTGAG
CCTCCCGCACTGACTTTTATCACCCCGCCCGGTCGAAACTCCGTACTCAGAGTCGCCGCAAGCTTTTGGTCTGAACTTTT
GGCGCGTGCGTGCGTGCAGTGAAGGAGAGCTGCCGGAGGCAGGGCCTCGGCGAGGCGCTCCTGCAGGCCGCCGTCGAGAA
GTGCCGGAGGAGGCGGGTCCAGCGGGTGTCCCTCCACGTCGACCCGGCGAGGACGGCCGCGGTGGCGCTTTACCGGAAGG
CCGGGTTCCAGGTGGACGCCACCATCGAGGGCTACTACTCCGCACAGAGGAATGCTTACCGGATGTACATGGATCTCTAG
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>chr1A_1_TraesCS1A01G169200
CATGCAGAGACCATGCTTGCGTGGTTATTTTTGCAGCAATCAGGTCGTCGAGTTTTTGTAACAATACACTTGAGGCC-GA
GCTTGCTGCAATCCGGGAAGGAATCTACCTCGCCTTGAGCTGGACGGAGCTCAACTTCATGGTAAAAAATGATTGTGCTG
AACCGATCTAGATGATCGAGAAGCCGAGAAAGGACCGGTCGATGCATGCACAATTGCACATCATGTTCTGGAGATTAGAT
CACTGTTGTCGGTTAGAAAAGGTTAAGCGTGAAGGTAATGTAGCCGGTCATAGCATTGCCTCTCCGG---GTACATTGCA
AGAGCGAATCAACCTGTGGAGTTGGTTAGGTGGACAGTGGTATCCCCAACCCACTAAGGTTTAAATCCTGGTGCTTGCAT
TATTCTTGGATTTATTTCAGGATTTCCGACGATGCGCTTTCAGTGGGAGGAGACGTTCCCGTCGACGACGAGGCGCCTAC
GGTAACTTCGTAAATCTCAAGATGATATGCCGGCTCAGTCTCTCGGAGCTGCTTATATGGGTAGGGTGTGCGTGTGTGCG
TTCATAGGGATGAGCGCATGCACATGTATATGAGCGCTTGTGTCTGTATTGATGCTAAAAAAAAAAGAGCGCACTGCTTG
TTGGTTGTGTAATACACCGGAGGAAATCACTAGCATCGTGGCTGCCGATTGTCATAACCTTATGCCTTGATGAATAAATA
TCATTTCCATGAAAAAAATGGAGAAGAAGGTCACAATGATGATCCAACTGGTGGGT------------------------
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----ACACCTCGCAGGGATTTTGCAAATTCACCCACGAGGTACACATGAACAATGTTCTGAAGTTTTTCAAAAACAAAAA
AGTTCAGAAGTTGCTTGTCAAAATTACTGATATAG---------------------------------------------
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------TCTGTCCAAGCAATTACCCTTTTTGGTGC--TA--GGTCTACTGATTTTCTAATCGGGGAAGAAGCAGGGGGGA
ATTGCAAAAGAGAGCTCCACGTTCGCTCGCCCCGTCCGTGAAGAGCCATG---------GCGGCCGCGGCCACGATCCTC
GAGTTGGACCCTTCACACGAGCGCGCCGGCCGCGTCATCGACGACATCGTGCGGCTGGAGAAGAGGATCTTCCCGAAGCA
CGAGTCGCTGGCGCGCTCGTTCCACGACGAGCTCAAGCGCCGGAACACCGGCCTGATCTACTCGACGTCCGGCGTCGGCG
ACGACGAGGAGGTCGCCGGCTACGCCATGTACACCTGCGCCACCTCCCTCTGCGCCTCCATCACCAAACTCGCCGGTGAG
CCTCCCGCACTGACTTTTATCACCCCGCCCGGTCGAAACTCCGTACTCAGAGTCGCCGCAAGCTTTTGGTCTGAACTTTT
GGCGCGTGCGTGCGTGCAGTGAAGGAGAGCTGCCGGAGGCAGGGCCTCGGCGAGGCGCTCCTGCAGGCCGCCGTCGAGAA
GTGCCGGAGGAGGCGGGTCCAGCGGGTGTCCCTCCACGTCGACCCGGCGAGGACGGCCGCGGTGGCGCTTTACCGGAAGG
CCGGGTTCCAGGTGGACGCCACCATCGAGGGCTACTACTCCGCACAGAGGAATGCTTACCGGATGTACATGGATCTCTAG
AAATCATCAGGATCGGAGCATCAAGGCTTCTTCACTCCGCCGATTGTGCTGTTGTTGAGTTCAAATTGTTTTCTTCTTCT
TCTGAATTTACATGAGAGTTGAACTTATTTACTGTGAAATGTCTGCGCTTCAAATGGCCCCAAATAACAGTATCTCGGTA
AAAATCTGCGGATGTATTACTCATTTATGATGTTGCAGTTTCAGACTAACAGACATTACCAAATGCAAATATTGTTGCTA
AGGTCCCTCCTAATGTTCCATCCTGTATAGGTGCTAAGACTGCTATGTAGGCAAAAAAAACTGATGTGACAAGGTAATTA
AGACGAGAGAGATGAGGATGGCGATCCAGAAAGAAACAATGCTAAGCGCGAAAAACCTAGGCAATAGACTTAAATGAAAC
AATCCCATCAATGAATGAAGAATTTTATTTGCAAAATTATTAAATGGATGCTTAGCACCAACAAGTTAAGCGCCTATGTA
TTGGGGGTTTTAGTTGTTAAAGTTTTCAATATGTTTAGCACTTTATGTAAGTGCCAATGCATTGGAAGTAGTCGGCCAAC
TTCACTGTAGTATTATCACTTTGCAGCAAGAGAATATGATTTAATGCAACTCCTTATTGTTACTCTCTTTTTTTCGATTT
ATAGGGCTCAATTTAAAAATTTCACAAACCAAGGTAGATGATGAGTGGTGAAATACTTTTTGTAGTTTGCAAAAGTACCT
AACTAATACTCTTGTTTTTCTAAAAAATTATGTTTATGAATGCATTAATTGCAATGCATGCATGCATAAAGTACATGCAT
TGATCAATTTTCTCTTAATTCTTACATGCAATGATTTAATGCACCTTAGAATCTGAATATGTGATGAGAAACAACCAAAT
TAAGCCTTATGAAATGGAGAAATTAAAATTTTAAATAATAAGCCCTATAAACCAGAAAGGAGGGAGTATGTCAATTTCAC
AAGCATTAATTAGTACTCTCTCCTGTCCATATTAATTGTC
>chr1B_4
---GCAGAGACCATGCTTGAGTGGTTATTTTTGCAACAATCAGATCGTCAAATTTTTGTAACAATACGCCTCAGGCCTGA
GATTGCTGCAATCCGGAAAAGAATCTACCTCGCCTTGAGCTGGACGGAGCTCAACTTCACGGTAAAAACTGATTGTGCTG
AATCGATCTAGATGATCGAGAAGCCGAGAAAGGACTGGTCGATGCATGCACGTCACATTT--------TGGAGATTAGAT
CACTGTTGTCGGTTAGAAAAGGTTAAGCGTGAAGGTAATGTAGCCGATCATAGCATTGGCTCTACTGGTAGTAGATCGCA
AGAACA--------------------------------------------------------------------------
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-----------------------------------------------------------------------CACTGCTTG
TTGGTTGTGTAATGCCCCGGAGGAAATCACTAGCATTGTGGCTGCTGATTGTCATAACTTTATGCCTTGATCAATAAATA
TCCTTTTCATGAAAAAAATGGAGAAG---GTCACAATGATGAATCAACTGGCGGACACGCCGTACACCTCGCGGAAGTGG
ATCCTCTAACATGAAGGAGGAAAATCATCTAAGCTACAATTCTCTAACTTTCCTCCTTCACTTCCATATGATTAACGCTA
AAATGACTTGAATCAATTTGCAAATTATTAATCTACTTTATACATTTGCAAAAATTACATACAAACAAATTATGATGTAA
TAAAATTAATTTTAAATTTATTTACCAACAGTAACTGTGTACAATACCTACTTAAATAGATAATACAACGTTCGCTACAG
TATCCGTGACTTTTCTTTTTTATTTTACACTAGCTTGCATTGTAGCTTAGGTGACTTTCCTCCCATGTCAGAGGATCCAC
TTCCACACCTCGCACGGATTCTGCAAATTCACCCACGAGGTACACATGAACAATGTTCTGAAGTTTCTCAAAAACAAAAA
AGTTCACAAGTTGCTTGTCAAAATTACTGATATACTTCCTTCGTTCCTAAATATAAGTCTTTGGAGAGATTTCACTATAA
ATCACATACGGATGCATGTAGATGCATTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCCATAGTGAAATCT
CTCCAAAGACTTATATTTAGGTGCTCCATATGTAGTCCATAGTGAAATCTCTTCAAAGACTTATATTTAGGGACAGAGGG
AGTAGTTCTGTCCAAGCAATTTCCCTTTTTGCTGCTATA--GGTCTACTGATTTTCTAATTGGGGAAGAAGCGGGGGCAA
ATTGCAAAAGAGAGCTCCACGTTCACT---CCCATCCGTGACGAGCTATGGCGGCGGCCGCGACCGAAGCGACGATCCTC
GAGCTGGACCCTTCGCACGAGCGCGCCGGCCGCGTTATCGACGACATCGTGCGGCTGGAGAAGAGGATCTTCCCGAAGCA
CGAGTCGCTGGCGCGCTCGTTCCACGACGAGCTCAAACGCCGGAACACCGGCCTGATCTACTCGACGTCCGGCGTCGGCG
ACGACGAGGAGGTCGCTGGGTACGCCATGTACACCTGCACCACCTTCCTCTGCGCCTCCATCACCAAACTCGCCGGTGAG
ACCCTCGCACTGA-TTTTATCACCCTGCCCGGTCGAAGCTTTAA--------------------TTTGGTCTGAATTCCT
GGC----GCGTGCGTGCAGTGAAGGAGAGCTGCCGGAGGCAGGGCCTGGGCGAGGCGCTGCTGCAGGCCGCCGTGGACAG
GTGCCGGAGGAGGCGGGTCCAGCGGGTGTCCCTCCACGTCGACCCGGCGAGGACGGCCGCGGTGGCGCTTTACCGGAAGG
CCGGGTTGCAGGTCGACGCCACCATCGAGGGCTACTACTCCGCGCAGAGGAATGCTTACCGGATGTACATGGATCTCTAG
AAATCATCAGGATCGGAGCATCAAGGCTTCTTCACTTCGCCGGTTGTGCGGTTGTTGAGTTCAAATTGTTTTCTTCTTCT
TCTAAATTTACATGAGAGCTGAGCTT------------ATGTCTGCGCTCCAAATGGCCTCGAATAACAGTATCTCA-TA
AAAATCTGCGGATGTTTTACTCATTTATGATGTTGCAGTTTCAGACTAACAGATATTACCCAATGCAAATATTGTTGCTG
AAGGGCC-------------------------------------------------------------------------
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>chr1D_5
----CAGAGACCATGTTTGAGTGGTTATTTTTGCGGCAATCAGATAGTCGAATTTTTGTAACAACACGCTTGAGGCC-GA
GCTTGCTGCAATCCGGGAAGGAATCTACCTCGCCTTGAGCTGGACGGAGCTCAACTTCAC--------------------
----GATCGAGACGATCGAGAAGCTGAGAAAGGATCGGTCGATGCATGCACATCACATTA--------TGGAGATTAGAT
CACTGTCATCGGTTAGAAAAGATTAAGCGTTAAGGTAATGTAGCCGGTCATAGCATCGCCTCTACGG---GTAGATCGCA
AGAACC--------------------------------------------------------------------------
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-----------------------------------------------------------------------CACTTCTTG
TTGGTTGTGTAATACCCCGGAGGAAATCACTAGCATTGTGGCTGCTGATTGTCATAACCTTATGCCTTGATCAATAAATA
TCCTTTCCATGAAAAAAACGGAGAAA---GTCACAATGATGAACCAACTGG-----------------------------
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----------------GATTTTGCAAATTCAACCACGAGGTACACATGAACAATGTTCTGAAGTCTCTCAAAAACAAAAA
AGTTCACAAGTTGCTTGCCAAAATTACTGATA------------------------------------------------
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--TAGTTCTGTCCAAGCAATTTCCCTTTTTGCTGCTATATAGGTCTACTGATTTTCTAATCGGGGAAGAAGCGGGGGAAA
ATTGCAAAAGAGAGCTCCACGTTCGGTCCCCCCATCCGTGACGAGCTATGGCGGCGGCCGCGACCGAGGCGACGATCCTC
GAGCTGGACCCTTCGCACGAGCGCGCTGGCCGCGTCATCGACGACATCGTGCGGCTGGAGAAGAGGATCTTCCCGAAGCA
CGAGTCGCTGGCGCGCTCGTTCCACGACGAGCTCAAACGCCGGAACACCGGCCTGATCTACTCGACGTCCGGCGTCGGCG
ACGACGAGGAGGTCGCCGGGTACGCCATGTACACCTGCGCCACCTCCCTCTGCGCCTCCATCACCAAACTCGCCGGTGAG
ACCCTCGCACTGA-TTTTACCACCCTGCCCAGTCGAAGCTTT------------------------TGGTCTGAACTCCT
GGCCCGTGCGTGCGTGCAGTGAAGGAGAGCTGCCGGAGGCAGGGCCTGGGCGAGGCGCTGCTGCAGGCCGCCGTGGACAG
GTGCCGGAGGCGGCGGGTCCAGCGGGTGTCCCTCCACGTCGACCCGGCGAGGACGGCCGCGGTAGCGCTTTACCGGAAGG
CCGGGTTCCAGGTGGACGCCACCATCGAGGGCTACTACTCCGCACAGAGGAATGCTTACCGGATGTACATGGATCTCTAG
AAATCATCAGGATCGGAGCACCAAGGCTTCTTCACTTCGCCGATTGTGCTGTTGTTGAGTTCAAATTGTTTTCTTCTTCT
AAGTTTACAT-----GAGTTGAGCTTATTTACTGTGAAATGTCTGCGCTCCAAATTGCCCCAAATAACAGTATCTAGGTA
AAAATCTGCGGATGTATTACTCATTTATGATGTTGCAGTTTCAGACTAACGGATATTACCAAATGCAAATATTGTTGCTG
AAG-----------------------------------------------------------------------------
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>SNPs
SSS----------------S-----------------------S-------S---------------S------------
-----------------------------------------------------------S--------S-----------
--S-------------------------------------------------SSSSSSS-SSSSSSSS------------
---------------------------------------------------------------S---------S--S---
---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
---------------S--------------------S--------S-------------------------S--------
--S-----------------------SSS-------------S--------S--SS------------------------
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--------------S---------------------------------------------------S-------------
------S---------------------------S---------------------------------------------
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---------------------S---------S----------------------------------------S----SS-
----------------------------S----S-------S----S---------------S---S---S---------
---S----------S-----------------------------------------------------------------
------------------------------------S-------------------------------------------
-------------------S------------------------------------------------------------
S-S-S--------S-----------S-----------S--SSSSSSSSSSSSSSSSSSSSSSSS-------------SS-
---S-------------------------------------------S-----------S--------------S--S-S
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------------------------------------S-------------------------------------------
---S------------------S--------------------------S------------------------------
-----------------------------------------------------S-------------------------S
-S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_492
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------------------------------------------------------------------------GCGCCTAC
GGTAACTTCGTA--------------------------------------------------------------------
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>reverse_2628
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-------------------------------------------------------------------AAGCGCCTATGTA
TTGGGGG-------------------------------------------------------------------------
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