>input_sequence_75142
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------------------------------------------ATGACGTCCGTGCGCAGCGCCGCCGGGGTCGCGCTGCC
GCCTATCCGCCTGGCGGTGGAGCGGGCGCGCCAGGAGGCGCTCCGGCGCGAGCTGGACGGGTGCCAGCTCCTGGCGGGCA
TCTGGTGCCACGGCTTCACGGTGGCGCAGCTCCGCAGCATCCGCGCGTCGCTCCCCTCCACGGCGCGGCTGCTGGTCGCC
AAGAACTCCGACCTCGCGGCGGCGGTCGAGGGCACGCGCTGGGAGTCGCTCCGCCCCTGCGCCCGTGGCATGAACGCCTG
GCTCTTCGTGCGCTCCGACGAGATCCCGCCGGCCCTCCGGCCCTACCGCGACTTCCAGAAGGAGTGGCGCCTCCAGCTCA
ACGACTTCACCGGCGCCGTCTACGAGGGCCGCCTCTACGGCCCCGACGACTTCGCGCAGCTCGAAGCCATGCCCACCAGG
GTGCAGTCCTACCAGTACCTCCTCGGATGCCTCCAGATGCCCGCCGTCTCCGTCCTCGCCGCCCTCCGCGCGCGCCAGGA
GGCCATGACGCAGGCCGAGAAGCCGCCAGCCGAGGAGGCGGCTCCTGCTCCTGCTCCGGAGAAGTGA-------------
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>chr5B_1_TraesCS5B01G302100
TCCCTTTTCCTGATGGCCCGCGCGCGTACATGGGTACTCATTTCCGTATAAGAGGCAAGACAGTTATTTGCATCCTGATT
TACTGGGATACACGGATTGCATGTGCCATGCAAGGCCGGCATCATATCTGCATGCAGCGGCCAAATCAGTGGAGGCTCAC
GTAATTGATTTCCAACGCTAAACTAATATCAGGGGTAGTGTTGTACGAGATGCTTCAAAAATTGCTGCCTTGGTCACCGA
GCTGGAAAAATGCACCTTAGATAAAGGAACGGAGGGAGTATTATTCGAAAAGAGAAGCAAAAGACCAGAGAGTTTTATGA
GAAAAATGACGGTCTTACCTTGGAGAAAGCTAAAGTTATAAAGCTTTTTAAAAAGAAGGAGCTCAAGCCAATTTTAAAAA
GTACTCTCTCTATGAAGAAATATAAGAGCGTTTAGATCACTATTTTAGTAATCTAAACGTTCTTATATTTGTTTACGGAG
TAAGTAGCAATTTAATTGGAAAAGGCGGCTTTGGTGAAGTTTACAAGTGGGTTGTTGATAACATACTACTAGTCGCAGTA
AAGAAACCAATTAGTGGTAATGTGCTGGAGAACAAGCAATTTGCAAATGATGTCATCATACAGTCTCAAGTCATCCACAA
GAACATCGTTAAGCTTGTAGGTTGTTGCCTAGACGTGGATACATGTTTGAAAATTTGAAAAAATTCACATTTTCAAAAAT
TGTTTGTGTTTAAAAAAATGTTTAGAAAAAAATGGTCGCGTTTCAAAATATATTTTTCCTTTTTCCGAATTTTTTTCGTT
AAACAAAGAAAATCTTTCGCTACAGCTCCTTTCTCGATCGCTACAGCCTCTTTCCTCTATGGTACAGATTGCACAGTGTT
GGGCTGGCCCAGCTGGAAACTCTCTGTGCGAATCGCGCATAGCAGCTCCCCGAGTCGAAAGTCAGACGCACACTCGCATC
GACG--CCCCCAGAACCGTCGCCGCCGCCACCAGCGCCGACTATGACGTCCGTGCGCAGCGCCGCCGGGGTCGCGCTGCC
GCCTATCCGCCTGGCGGTGGAGCGGGCGCGCCAGGAGGCGCTCCGGCGCGAGCTGGACGGGTGCCAGCTCCTGGCGGGCA
TCTGGTGCCACGGCTTCACGGTGGCGCAGCTCCGCAGCATCCGCGCGTCGCTCCCCTCCACGGCGCGGCTGCTGGTCGCC
AAGAACTCCGACCTCGCGGCGGCGGTCGAGGGCACGCGCTGGGAGTCGCTCCGCCCCTGCGCCCGTGGCATGAACGCCTG
GCTCTTCGTGCGCTCCGACGAGATCCCGCCGGCCCTCCGGCCCTACCGCGACTTCCAGAAGGAGTGGCGCCTCCAGCTCA
ACGACTTCACCGGCGCCGTCTACGAGGGCCGCCTCTACGGCCCCGACGACTTCGCGCAGCTCGAAGCCATGCCCACCAGG
GTGCAGTCCTACCAGTACCTCCTCGGATGCCTCCAGATGCCCGCCGTCTCCGTCCTCGCCGCCCTCCGCGCGCGCCAGGA
GGCCATGACGCAGGCCGAGAAGCCGCCAGCCGAGGAGGCGGCTCCTGCTCCTGCTCCGGAGAAGTGATCCAGCCGTTGAC
GCCGAGGTTCCTCAGTTATCACACCTGCAGCTCCTTTCTC-------------TTTTGCAGATTTTGAATTCAGTGTTAG
TAGAGAACATCCACAAAACCATCATAAGGATGCATTGCTCTTATGTATCATCAGTTCATGAACTGACTTTTGAATGGGAA
GA---AATGTGATGTTGGATTGCCATTGATGATGATTTAACTAACAAATGGGAAGAAATTTAACTAACAAAATATAAACT
ATATGTCACAAAAATTATATTGTCGGAAAGCTCTTTCAAATACAAACCCAACAGTCTAATTTTTTTATAGCACATAATTT
ATATTTTAGTAGTCTACAGATAGCCAAAGTCTAGCCCAAAATACGAAGGGCCGATAAACCCAGACGGAGGTAGTATTTTG
TCTGGGAACAAATGTGGTGCTGTTGAATTGCCACTGCCAAAGTGCCAATGTAATACTGCATTTGATTTCAGGTACAAATC
AGACACCCGCCCACCCTCTTACGGAAATTCTTGTAAATTCCAACAACATACTCAAATGCTCTGCCTTTTTTACTAATGCT
GAATTGCTGATGCACGGTCGATTTGTTAGATCACTTGCTAGTGCTGAACCACTGGTGTACTAGAGGTATGCCAGGATGAT
GATGTATGTTGTTGCCTGCATGGGGCATCATTGTTTCACTGCGACCTGTATCAGTTAAAGACCTGCAACTTGTTGTAGAT
AAGATCATCAAAAGAGTAGCTAGCTACAACTTGTAGAAAAGATCATCGAAAGAGTTAGAAAAGGTCGTTGAAAGAGTTTG
TACCCATAAATCATAGCGATGTGCTGCTCTAATGTATTATTGCCCATTTTTTGGTAAATTATTATTTGCTGCTTAGTGTT
GGTGACTGGCAAGCTTGTTTTCTGATTTTTGGCTGGGAACAAGTCCGGAATCGCCATGCTGATGACCTGATGTCATGCTC
TTTGATGGCATTTTGTTTCAGGTGCAAATGGGCGGATGCGGTT
>chr1A_864
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---------------------------------------------------------------ACAGATCTCACAGTACT
GGGCTGGCCCAGCTGGAGGCTCTCTGCA--AATCGCACATAGCAGCTCCCCCAGCCGAAAGTCAGACGCAACGCCGCCCC
CCAGAACCCTCGCCGCCGCCGCCGCCACCGCCACCGCCGACTATGACGTCCGTGCGCAGCGCCGCCGGGGTTGCCCTGCC
GCCGATCCGGCTGGCGGTGGAGCGGGCGCGCCAGGAGGCACTCCGGCGCGAGCTGGACGGGTGCCAGCTCCTCGCGGGCA
TCTGGTGCCACGGCTTCACGGTGGCGCAGCTCCGCAGCATCCGCGCCTCGCTCCCCTCCACGGCGCGGCTGCTGGTCGCC
AAGAACTCGGACCTCGCGGCGGCGGTCGAGGGCACGCGCTGGGAGTCGCTCCGCCCCTGCGCCCGCGGCATGAACGCCTG
GCTCTTCGTGCGCTCCGACGAGATCCCGCCGGCGCTCCGCCCCTACCGCGACTTCCAGAAGGAGTGGCGCCTCCAGCTCA
ACGACTTCACCGGCGCCGTCTACGAGGGCCGCCTCTACGGCCCCGACGACTTCGCGCAGCTCGAGGCCATGCCCACCAGG
GTGCAGTCCTACCAGTACCTCCTCGGGTGCCTCCAGATGCCCGCCGTCTCCGTCCTCGCCGCCCTCCGCGCGCGCCAGGA
GGCCATGGCGCAGGCCGAGAAGCCGCCCGCCGAGGAGGCGGCTCCTGCTCCGGCGCCGGAGAAGTGATCCCTCCGTCGAC
GCCGAGGTTCCGCAGTTATCACACCTGCAGCTCCTTTCTC-------------TTTTGCAGATTTTGAATTCAGTGTTAG
TAGAGAACACCCACAAAACCATCATAAGGATGCATTGCCCATATGTATCATCAGTTCATGAACTGACTTTTGAATGGGAA
GAAGAAATGTGATTTG----------------------------------------------------------------
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>chr1B_931
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--------------------------------------------------CGAGTCGAACGTGGCACGCACACTCGCATC
ACTGGCCCCTCAGAGCCCTCGCCGCCGCCGCCGCCGCCGAAGATGACGTCCGTGCGCAGCGCCGCCGGGGTCGCGCTGCC
GCCGATCCGGCTGGCGGTGGAGCGGGCGCGCCAGGAGGCGCTCCGGCGCGAGCTGGACGGGTGCCAGCTCCTGGCGGGCA
TCTGGTGCCACGGCTTCACGGTGGCGCAGCTCCGCAGCATCCGCGCGTCGCTCCCCTCCACGGCGCGGCTGCTGGTCGCC
AAGAACTCGGACCTCGCGGCGGCGGTCGAGGGCACGCGCTGGGAGTCGCTCCGCCCCTGCGCCCGCGGCATGAACGCCTG
GCTCTTCGTGCGCTCCGACGAGATCCCGCCGGCCCTCCGCCCCTACCGCGACTTCCAGAAGGAGTGGCGCCTCCAGCTCA
ACGACTTCACCGGCGCCGTCTACGAGGGCCGCCTCTACGGCCCCGACGACTTCGCGCAGCTCGAGGCCATGCCCACCAGG
GTGCAGTCCTACCAGTACCTCCTCGGATGCCTCCAGATGCCTGCCGTCTCCGTCCTCGCCGCCCTCCGCGCGCGCCAGGA
GGCCATGGCGCAGGCCGACAAGCAGCCCGCCGAGGACGCGGCTCCTGCTCCGGCGCCAGAGCAGTGATCCCTCCTTCAAC
GTCGAGGTTTCTCAGTTA---CACTTGCAGCTTAAAAGCTGCTCCTTTATTGTTTTTGCACATTCTGAATTCAGTGT-AG
TAGAGAACACCCACAAAATCATCATAAGGATGCATTGCTCTGATGTATCATCTGTTCATGAACTGAATTTCAAACGGGAA
GA---AATGTGTTGTTCAGCTGCCATTGATCATGATT-------------------------------------------
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>chr1D_974
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---------------CCGCCGCCGCCGCCGCCACCGCCGACTATGACGTCCGTGCGCAGCGCCGCTGGGGTCGCGCTGCC
GCCGATCCGCCTGGCGGTGGAGCGGGCGCGCCAGGAGGCGCTCCGGCGCGAGCTGGATGGGTGCCAGCTCCTCGCGGGCA
TCTGGTGCCACGGCTTCACGGTGGCGCAGCTCCGCAGCATCCGCGCGTCGCTCCCCTCCACGGCGCGGCTGCTGGTCGCC
AAGAACTCGGACCTCGCGGCGGCGGTCGAGGGCACGCGCTGGGAGTCGCTCCGCCCCTGCGCCCGCGGCATGAACGCCTG
GCTCTTCGTGCGCTCCGACGAGATCCCGCCGGCGCTCCGCCCCTACCGCGACTTCCAGAAGGAGTGGCGCCTCCAGCTCA
ACGACTTCACCGGCGCCGTCTACGAGGGCCGCCTCTACGGCCCCGACGACTTCGCGCAGCTCGAGGCCATGCCCACCAGG
GTGCAGTCCTACCAGTACCTCCTCGGGTGCCTCCAGATGCCCGCCGTCTCCGTCCTCGCCGCCCTCCGCGCGCGCCAGGA
GGCCATGGCGCAGGCCGAGCAGCCGCCTGCGGAGGAGGCGGCTCCTGCTCCGGCGCCGGAGCAGTGATCCCTCCATCGAC
GCCGAGGTTTCTCAGTTA---CACCTGCAGCTTAAAAGCTGCTCCTTTATTGTTTTTGCACATTTTGAATTCAGTGT-AG
TAGAGAACACCCACAAAATCATCATAAGGATGCATTGCTCTGATGTATCATCTTTTCATGAACTGAATTTCAAATGGGAA
GA---AATGTGATGTTCAACTGCCATTGATCACGATT-------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS------SS-
-----------------SS-------SSSS------S-------------------------------------------
SSS------S----S--------------S---S----------------------------------------------
---S----------------------------------------------------------------------------
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--------S--------------------------------------------------------S--------------
---------------------------------------S----------------------------------------
----------------------------------------------------------------S---------------
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-------S-------------------S-----------------------S--S---------------SS----S---
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---------S----------------------------------------------------------------------
----------------SS-S----------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_679
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-------------------GGTTGTTGCCTAGACGTGGA-----------------------------------------
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>reverse_2478
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-----------------------------------------------------------------------------GTT
GGTGACTGGCAAGCTTG---------------------------------------------------------------
-------------------------------------------
