>input_sequence_75097
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---------------------------------------------------------------ATGAGCGAGGCACCCGC
GACGACCGCCGCCGCCGGAGACGACCCTGACGCCACCGCCACCGCCAATCATCATCAGCAGCAGCAGCAGGCGCAGGCGC
AGGCGCAG------CCCGAGACGCAGGACGACGCGGACCAGCTGTCGGAGCTGCGGCAGATCTTCCGGTCCTTCGACCGC
AACAAGGACGGCAGCCTGACGCAGCTGGAGCTGGGCTCCCTCCTCCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCT
CGACGCCCTCATCCACCGCGCCGACACCAACTCCAACGGCCTCGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCTCCCCCG
AGCTCCTCGACGACCGCTCCCCCTACTCCGAGGACCAGCTCCGCAGGCTCTTCGAGATCTTCGACCGCGACGGCAACGGC
TTCATCACCGCCGCCGAGCTCGCGCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGCCAAGGAGCTCACCGGAATGAT
CGAGGAGGCCGACACCGACGGCGACGGCCGGATCAACTTCCGTGAGTTCTCCCGCGCCATCACCGCCGCTGCCTTCGACA
ACGTCTTCTCCTGA------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G197600
CAACCCGCTAGAGGGTTATGGCGCGATGAAGTGCATCATGGTGCGCCCTTGCGTGTTTCCGTGTTGGCCTTCTTGGCAGC
CTTCCGGATCTGACGTTGTCAAGGAGGCTAGGGAAGGGACCATAAAGAATTGGAGCAGCTAGGGCTCGGTCAGAGAGAAG
GAGAGGCCACAGTAGTTTGCTTCTTTGGAGACATGCACACTTATATTTTCTTTTTTACTTTGTCAGCTAGGGCTCGGTCA
GAGAGAAGGAGAGACCATAATGAATGAACCGGGAGGAGGGGGTCAACAAATAAAATAAAAAGCTGGAGCAAAGGAGTACT
AGGGGGAAAACTCGGAGTGGGAGGCGGGAGATTAGTGCGTGGGTGATATTTTCTTTT-TTACTTTGTAATAGATTGGTTC
ATAACTCGTTCTTTTTACATTGAGTAGATTAAATAGCTCGGATTAAACTTAATTAAGTAGTGAATTTTATATTGAATATG
-TATAACAAATTGGATCAAACTTAATTCATGCTTTTTAATATTGAATATATTAAATAGCTTGGATTAAACTTAAGCTGCT
ATTTTATATTGACTGCATTTTTTATAAATCGGATCAAACTTCATTCGTGCCTTTTATACTTGA-------------ATGA
AGGA--ATATATATAGATATAAATGATTTTTTTT--CTTTGTCCGA----ATATACAATAATTGGTAATTTATAAATGCG
GCAAGAATAATTCGAACCAACAATTTTGCGGCTTCTCTGTCTTCGCCGTGGTGTAATATATACCCGGTGCATTTCAACTA
TGCGGAGCACGTCGCCATGATCAATTGATCAGGGGAGCTCCAGTACAATCGTGTCCGTCTTCCCCGATCCGCCTCTCCGG
CGCGCCAACTTCCTCGTAGCTGCCAGTCCCCCGCCTTCTCCGCGCGCACCACCCAAAATTCTCCCGACCCAACAACCTCC
AACGCTCTCGACCGCCCCCTCTTCCTCTTCCTCCTCCCAGCCTCCCGATCGCTCCAGTGCGCCATGAGCGAGGCACCCGC
GACGACCGCCGCCGCCGGAGACGACCCTGACGCCACCGCCACCGCCAATCATCATCAGCAGCAGCAGCAGGCGCAGGCGC
AGGCGCAG------CCCGAGACGCAGGACGACGCGGACCAGCTGTCGGAGCTGCGGCAGATCTTCCGGTCCTTCGACCGC
AACAAGGACGGCAGCCTGACGCAGCTGGAGCTGGGCTCCCTCCTCCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCT
CGACGCCCTCATCCACCGCGCCGACACCAACTCCAACGGCCTCGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCTCCCCCG
AGCTCCTCGACGACCGCTCCCCCTACTCCGAGGACCAGCTCCGCAGGCTCTTCGAGATCTTCGACCGCGACGGCAACGGC
TTCATCACCGCCGCCGAGCTCGCGCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGCCAAGGAGCTCACCGGAATGAT
CGAGGAGGCCGACACCGACGGCGACGGCCGGATCAACTTCCGTGAGTTCTCCCGCGCCATCACCGCCGCTGCCTTCGACA
ACGTCTTCTCCTGACCCAGCCGTCGACCTGAGAGAGGCCCGCCCATCCATCGCCTTCAACCTCCGTGCGGATTCGATCCA
TGCCGCGCGTCATCATCGATCGCGCTCTGTTGGTGTCCGTGCTTCTCTCGATCGTTTGTGTTCTTGTCCGGGGACGGGGA
GGTCAGTGATCAGATAATATTTAGGCTGCAGGTGTTGGTGAGATGAGCTGTTGTGTGTTATGAATAACAAACAGATTAAA
CAAACCCAGAATGGCAGTGGCAAGATTACTTTAGGGGTCAAGGAATGAATTATCCATGCAAAATGCACATTGTGTTTGTT
GATTAATTTGCTCCCGTCAATCGATCGTCCCAAATCTCGCTCGATGGCCATCTGATGCTCACATT------GTGTTCGAC
ATTAC-TAAGGATAAGGAGAATTTGTCCATGAATGGTTGGGTCCATTATTAGTGAC------------------------
-----TTGTTCTTTGTTCATGTTGTCCAAGGAGGCAAGGACGAAGAGACGGCCGTCCTGATGTGCAGAGCATCGGATCTC
CG-TTTTTTTTGCGCTGCCGTCTACCATGTCGTAC---------------------------------------------
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------------------------------------GTACAAAACAAATTCAGCGCATGGCTGGCAGCCATTGCCTTTTT
ATTAGGTTAGGTTTTGTGTGAGCTGTTGAAGTATTCCTGTGATCACTCGTGTTGAACGGATCATGCGTGGTTATCTTCCA
CCACCAGCTGTAGCCGTCGGGTTCCCTGGCCAGATTCCAGTGAAAAGGCTCAATGCGTCTCGACTATGATTTGGCCAGAT
AGATAGCTGTCTGCTGGTCCCTGTTTCTTATGCCCTGTAGCTGCAATCATTCTTGTTTTAAAGGTGGATGGTCTCTCGTG
TCCAACTAATTTGGACGTAATAACAACTGAAGAAGTTGAGTTGTATGTTACTCCCTATGTTCCTAAATATTTGACTTTTT
AAATATTTTAAATGGACTACCACATACGGATGTATATAAACATATTTTAGAGTATAGATTCACTCATTTGCTCCGTATGT
AGTCACTTGTTG
>chr1B_259
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------------------AATGAATGAACCGTGAGGAC-GGGTCAACAAATAAAATAAAAAACTGGAGCAAAGGAGTGCC
ACAGGAAAAACTCGGAGTGGGAGGCGGGAGATTAGTGCGTGGGTGATATTTTCTTTTCTTACTTTGTAATAGGTTGGTTC
ATAATTCCTTCTTTTTATATTGAGTAGATTAAATAGCTCGGATTAAACTTAGTTAAGTAGTGAATTTTATATTGAATATA
TTATAACAAATTGGATCAAACTTAATTCATGCTTTTTTATATTGAATATATTAAATAGCTTGGATTAAACTTAAGCTGCT
ATTTTATATTGACTGCATTTTTTATAAATCGGATCAAACTTAATTCGTGCCTTTTATACTTGATATTTATGCTTAAATGA
AGGAATATATATATAGATATAAATGAATTTTTTTTCCTTTGTCCGG----ATATGCAATAATTGGTATTTTTTAAATGCG
GCAAGATAAATTCGAACCAACCATTTTGCGGCTTCTCTTTCTTCGCCGTGGTGTAATATATACCCGGTGCATTTCAACTA
TGCGGGGCACGTCGCCATGATCAATTGATCAGAGGAGCTCGAGTACAATCGTGTCCGTCTTCCCCGATCCGCCTCTCCGA
CGCGCCAACTTCCTCGTAGCTGCCAGTCCCCCGCCTTCTCCGCGCGCACCACCCAAAATTCTCCCGACCCAACAACCTCC
AACGCTCTCGACCGCCCCCTCTTCCTCTTCCTCCTCCCAGCCTCCCGATCGCTCCAGTGCGCCATGAGCGAGGCACCCGC
GACGACCGCCGCCGCCGGAGACGACCCTGACGCCACCGCCACCGCCAATCAGCAGCAGCAGCAGCAG---------ACGC
AGGCGCAG------CCCGAGACGCAGGACGACGCGGACCAGCTGTCGGAGCTGCGGCAGATCTTCCGGTCCTTCGACCGC
AACAAGGACGGCAGCCTAACGCAGCTGGAGCTGGGCTCCCTCCTTCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCT
CGACGCCCTCATCCACCGCGCCGACACCAACTCCAACGGCCTCGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCTCCCCCG
AGCTCCTCGACGACCGCTCCCCCTACTCCGAGGACCAGCTCCGCAGGCTCTTCGAGATCTTCGACCGCGACGGCAACGGC
TTCATCACCGCCGCCGAGCTCGCCCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGCCAAGGAGCTCACCGGAATGAT
CGAGGAGGCCGACACCGACGGCGACGGCCGGATAAACTTCCGTGAGTTCTCCCGCGCCATCACGGCCGCCGCCTTCGACA
ACGTCTTCTCCTGACCGAGCCGTCGACCTGAGAGAGGCCCGCCCATCCATCGCCTTCAACCTCCGTGCGGATTCGATCCA
TGTCGCGCGTCATCATCGATCGCGCCCTGTTGGTGTCCGTGCTTCTCTCGATCGTTTGTGTTCTTGTCCGGGGACGGGGA
GGTCAGTGATCAGATAATTTTTAGGCTGCAGGTGTTGGTGAGATGAGCTGTTGTGTGTTATGAATAACAAACAGATTAAA
CAAACCCAGAATGACAGTGGCAAGATTACTTTAGGGGTCAAGGAATGAATTGTCCATGCAAAATGCACATTGTGTTTGTT
GATTAATTTGCTCCCGTCAATCGATCGTCCTAAATCTCGCAAGATGGTCATCTGATGCTCACATAAATCAAGTGTTCGAC
ATTATTTAAGGATAAGGAGAATTTGTCCATGAATGGTTGGGTCCATTATTAGTGAC------------------------
-----TTGTTCTTTGTTCATGTTGTCCAAGGAGGCAAGGACGAAGAGACGGCCGTCCTGATGTGCAGAGCATCGGATCTC
CGTTTTTTTTTGTGCTGCCGTCTACCATGTCGTAC---------------------------------------------
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------------------------------------GTACAAAACAAATTCAGCGCATGGCTGGCAGCCATTGCCTTTTT
TA----TTAGGTTTTGTGTGAGCTGTTGAAGTATTCCTGTGATCACTCGTGTTGAACGGATCATGCGTGC----CTTTCA
CCACCAGCTATAGCCGTCGGGTTGCCTGGCCAGATTCCAGTGAAAAGTCTCAATGTGTCTCGACTATGATTTGGCCAGAT
AGATAGCTATCTGCTGGTCCCTATATCCTATGCCCTGTAGCTGCAATCATTCTTGTTTTAAAGGTGGATGGTCTCTCGTG
TCCAACTAATTTGGACATAATAACAACTGAAGAAGTTGAGTTGTATGTTA------------------------------
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>chr1A_259
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------------------AATGAATGAACTGGGAGGAGGGGGTCAGCAAATAAAATAAAAAACTGGAGCAAAGGAGTTCT
GGGGGAAAAACTCGGAGTGGGAGGCGGGAGATTAGTGCATGGGTGATATTTTCTTTT-TTACTTTATAATAGGTTGGTTC
ATAATTCGTT-TTTTTATATTAAGTAGATTAAATAGCTCAGATCAAACTTAATTAAGTAGTGAATTTTATATTGAATATA
CTATAACAAATTGGATCAAACTTAATTCATGCTTTTT-ATATTGAATATATTAAATAGCTTGGATTAAACTTAAGCTGCT
ATTTTATATTGACTGCATTTTTTATAAATCGGATCAAACTTAATTCGTGCCTTTTATACTTGATATTTATACTTGAATGA
AGGA--ATATATATAGATATAAATGAAATTTTTT--CTTTGTCCGGATATATATACAATAATTGGTGATTTGTAAATGCG
GCAAGATAAATCCGAACCAACCATTTTGCGGCTTCTCTTTCTTCGCCGTGGTGTAATATATACCCGGTGCATTTCAACTA
TGCGGAGCACGTCGCCATGATCAATTGATCAGGGGAGGTCCAGTACAATCGTGTCCGTCTTCCCCGATCCGCCTCTCCGG
CGCGCCAACTTCCTCGTAGCTGCCAGTCCCCCGCCTTCTCCGCGCGCACCACCCAAAATTCTCCCGACCCAACAACCTCC
AACGCTCTCGACCGCCCCCTCTTCCTCTTCCTCCTCCCAGCCTCCCGATCGCTCCAGTGCGCCATGAGCGAGGCACCCGC
GACGACCGCCGCCGCCGGAGACGACCCTGACGCCACCGCCACCGCCAATCAGCAGCAGCAGGCGCAG---------GCGC
AGGCGCAGGCGCAGCCCGAGACGCAGGACGACGCGGACCAGCTGTCGGAGTTGCGGCAGATCTTCCGGTCCTTCGACCGC
AACAAGGACGGCAGCCTGACGCAGCTGGAGCTGGGCTCCCTCCTCCGCTCCCTCGGCCTCAAGCCCAGCACCGACGAGCT
CGACGCCCTCATCCACCGCGCCGACACCAACTCCAACGGCCTCGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCTCCCCCG
AACTCCTCGACGACCGTTCCCCCTACTCCGAGGACCAGCTCCGCAGGCTCTTCGAGATCTTCGACCGCGACGGCAACGGC
TTCATCACCGCCGCCGAGCTCGCGCACTCCATGGCCAAGCTCGGCCACGCGCTCACCGCCAAGGAGCTCACCGGAATGAT
CGAGGAGGCCGACACTGACGGCGACGGCCGGATCAACTTCCGTGAGTTCTCCCGCGCCATCACCGCCGCCGCCTTCGACA
ACGTCTTCTCCTGACCGAGCCGTCGACCTGAGAGAGGCCCGACCATCCATCGCCTTCAACCTCCGTGCGGATTCGATCCA
TGTCGCGCGTCATCATTGATCGCGCTCTGTTGGTGTCCGTGCTTCTCTCGATCGTTTGTGTTCTTGTCCGGGGACGGGGA
GGTCAGTGATCAGATAATTTTTAGGCTGCAGGTGTTGGTGAGATGAGCTGTTGTCTGTTATGAATAACAAACAGATTGAA
CAAACCCAGAATGACAGTGGCAAGATTACTTTAGGGGTCAAGGAATGAATTATCCATGCAAAATGCACATTGTGTTTGCT
GATTAATTTGCTCCCGTCAATCGATCGTCCTAAATCTCGCAAGATGGTCATCTGATGCTCACATAAATCAAGTGTTCGAC
ATTATT-AAGGATAAGGAGAATTTGTCCATGAATGGTTGGGTCCATTATCAGTGACTTTGTTCTTTTTTTTTGCGGGGAG
TGACTTTGTTCTTTGCTCATGTTGTC--------CAAGGACGAAGAGACGGCCGTCCTCATCCGTCTGCGAATAAGTGTA
CATCTAGTTTTGGTCCTAAGTCAAAATATTAAAACTTTGACCAACTTCATAAGAAAAAATAACAGCATTTATGACACTAA
AGTAGTACCAATTTGATGTCATATATGCTATTACTATTTTTTATAGAATTGGTCAAATTTTAAAACATCAGACTTAGAAC
AAAACGTAGAAGTATACTTATTCGTGGACGGAGGGAGTACAAAACAAATTCAGCGCATGGCTGGCAGCCATTGCCTTTTT
ATTAGGTTAGGTTTTGTGTGAGCTGTTGAAGTATTCCTGTGATCACTCGTGTTGAACGGATCATGCGTGGTTATCTTTCA
CCACCAGCTGTAGCCGTCGGGATGCCTGGCCAGATTCCAGTGAAAAGGCTCAATGTGTCTCGAGTATGATTTGGCCAGAT
AG----CTGTCTGCTGGTCGCTATTTCTTATGCCCTGTAGCTGCAATCATGCTTGTTTTAAAGGTGGATGGTCTCTCGTG
TCCAACTAATTTGGACATAATAACAACCGAAGAAGTTGAGCTGTATGTTA------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------------------------------------------S---------------S--
-----S------------------------------------------------------------------S-------
----S------------S-------------------------------------------------------------S
-------------------------------------S------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------S------------------S-------------------------S--------
------SS-------------S----------------S-----------------------------------------
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---------------------------------------------------S--S------------SSSSSSSSS----
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---------------------------------------------------------------------S----------
----------------S---------------------------------------------------------------
--S-----------------------------------------------------------------------------
------------------S-------------------------------------------------------------
-------------S------------------------------------------------------------------
------------------------------S---------SS-----S----------------S---------------
----S---------------------------------------------------------------------------
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------------S-------------------------------------------------------------------
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-----------------------------------------------------------------------------S--
-----------------------S-------------------------------S------------------------
----------------------S---------------------------------------------------------
----------------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_72
----------------------------------------------------GTGTTTCCGTGTTGGCCTTC--------
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>reverse_1961
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----------------------------------------TCGATGGCCATCTGATGCTC--------------------
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