>input_sequence_75094
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-----------------------------------------------ATGGCGGCTTCGTTGGGACTGAACCCTGAAGGT
GTATTCAGCTCCGCCTTCGCCCACTCCTCACCTTTCCTGGGCGATCACTACGCACCGCCTGCCCGCGCCTTCATCGACGA
CAGTGATTACGCGGCTCAGCTCCACCTCCACGACGATCAT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------CAGCACTA
CCCTTTCGATCAATTCGAGTACTCGCCGCCGAT------GGCACAGGTCTCTTTCGCCGGCGCCGGGGATGACAAACATC
GCAGCGAGAAGACGATCAAAATCAGTGCGAGGGTGAGCGCAGGGAGGATCGGGTTCAGGACGAGGTCAGAGGTGGAAATC
TTGGACGACGGGTTCAAGTGGAGGAAGTACGGGAAGAAGGCGGTGAAGAACAGCCCGAACCCGAGGAACTACTACCGGTG
CTCGGCGGAGGGCTGCGGCATCAAGAAGCGCGTGGAGAGGGACCGCGACGACCCCCGCTACGTCGTCACCACCTACAACG
GCGTCCACAACCACGCAACGCCCGGCGCCGCCGCACAGTACTACTGCTACAGCCCCCCGCGCAGCTCGCCGCCGACAGCG
TATTCCGCCGCTGGCCTACTGCAATTCTGA--------------------------------------------------
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-----------
>chr1D_1_TraesCS1D01G122400
GCGGGGAGCTTGTAGTCGCGACAGGAGCCAGGGTGCGCCGCAGCCCTCGCCGGCCCAGCAAGAGGCGGCGGCCGCGGGGG
GTGGGGTTGGCCCAAGCCGCGGGTCGGGGGGGTGGTGGTGGTGGAGCACGCTAGTGGAGGGGGTCAGATCCGCCCCACTG
CCGCCATCCCGGGGTCCGGCGCGGCTTCGCCGGCCCGCCCTCCGGCGGCGGCGATGCGGGGGAGCGAGGCGCGGGGGGAG
CTGGCGGCGGCGGCTAGGGTTCCCCCCGGGTCGCCAGAGGTTAGGCAGGGGCGTGCGTGCCTATTTGCTTCTGCTACTGC
GTCAACTTGTCTAAACTTGGTTATGTCTGTTTATTTGTTTAGGGGTGTTGAATTGTTAAGGTTAACTTGGTGAATCTTGG
TTCATTGTCAGTTGGCTTTATCTTTTTCTTTTTGGCTTTACCTATAAAGCTAGCAAATGTCTTTCATCTAAAAAAATGTT
TAGAGGAGGAAAAACCAATTTATTCTT--TTTAACACATTTTAGGGAATCAGCTAAAAATGATATA-GGGGTAATAGGTC
GAGAGAAGGGGAAAAGAGGT--AATAGCATTTGCACAAGCTATCACAAGCGCTGAAA-TGACCGAAAGAACGCTGAACCG
CGAATCAATCTCGCTTATTTAATTAGTACTCCCTATATCTTTTCGAAACAAAATTATACGC-CAAGCTGCTATTAGATGC
CTGCCAAGTGCAGTTTATTGTGGTGTCACATCAAATCGTGGTAGAATTGACATGTGACATATCTCTCAAAGCAAAACAGT
CCAATGAAATCGACAAGCGACGCATCTGAGAACCTTCGGATCAGCTTTGGGAAACATCCTGAAAGCATGCTTGGCCGTAG
AACCGGGTGTATAAATGGCAAAGCTTGCACGACACAATATTTATTTAGGCACAAGCCAATCTACACAAGCAACCGGCGAC
CAACTAGTACTAGCTTAGTGGTGTAACTTCAAGTAGCTAGTACAGTAATGGCGGCTTCGTTGGGACTGAACCCTGAAGGT
GTATTCAGCTCCGCCTTCGCCCACTCCTCACCTTTCCTGGGCGATCACTACGCACCGCCTGCCCGCGCCTTCATCGACGA
CAGTGATTACGCGGCTCAGCTCCACCTCCACGACGATCAT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------CAGCACTA
CCCTTTCGATCAATTCGAGTACTCGCCGCCGAT------GGCACAGGTCTCTTTCGCCGGCGCCGGGGATGACAAACATC
GCAGCGAGAAGACGATCAAAATCAGTGCGAGGGTGAGCGCAGGGAGGATCGGGTTCAGGACGAGGTCAGAGGTGGAAATC
TTGGACGACGGGTTCAAGTGGAGGAAGTACGGGAAGAAGGCGGTGAAGAACAGCCCGAACCCGAGGAACTACTACCGGTG
CTCGGCGGAGGGCTGCGGCATCAAGAAGCGCGTGGAGAGGGACCGCGACGACCCCCGCTACGTCGTCACCACCTACAACG
GCGTCCACAACCACGCAACGCCCGGCGCCGCCGCACAGTACTACTGCTACAGCCCCCCGCGCAGCTCGCCGCCGACAGCG
TATTCCGCCGCTGGCCTACTGCAATTCTGAACCAAACCAGCTAATTCCGTTCTGCTCCCCGTACAGTAGAAACTAGAAAG
CTCAAAACTTCTGTTTTT-GCCGATCGAGGGATGTCGTCGTCGGTTCGAGTTCTTGTATACAGGACATGATGTATGTAGC
TTAGAATTGTTCAA-TTGCAGCCAGATTGCTAATTTAGTCCAAAATTATGGAGCACGAATAGGTGGAGGGCTCTAAAATT
TGGATCGGCGACTTCTGGTTTGCTTGCTTGTCAAGTTTCTCCTTGTATCACCTGA---------AAACAAAAGAAGTTCC
TCCTTAATAGTAGTATATGATTAGGCGCTTCTTGACTTAATTGAACGGCCTGCGTTTTCTCCATCAGTCAAATAAACGGG
TAGC----------------------------------------------------------------------------
-------ATACTTGAATCCCCATTCAGCATGCCACCTGAATGCTCAATCGTGTAATCTATACAATGTTTTTTTATATAGC
TTACCACTCATGCCAACTGGTTATACAATGTTTTTTTTTGGGGTAATCTATACAATGTTTTTTT-ACGGGAAAGCT--TA
CTTTATTAATCAAAGGATGGATATATCGTCTGCCAGCAG----ACATACAATGAAATCAGGTGGGGCATCAATCCAACAA
GATGGATTATTAGCACGTCCCCATCTAGCCAGCTCATGAGCTACATAATTTGACTCTCTAATACAATGCTCAATAGTAAA
CCTCCCGAAATCCACTAGATAACTGCGACATTCTTGAAGAACCGACGCTGCCACCATAGAATAACCTTCATTGAATCTAA
GTGCATCCACCACCGTGATATTATCCGATCTCACCAACAAGTTATTGCATCCCGTATCTCTTGCTAGCTTCAGTCCTTCA
AGCAGAGCTGCCGCTTCTACCGTGAACACATCAGCTACATGTTCTAATCTCGCTGTGGAAGCCGGCATGAAAGATCCCCG
GTGATCACGGATGACAGCACCACAAGACCCTGCATAATCGCCTTCTGTGAATGAAGCATCGACATTAAGGACAAGTTGTC
CTGCTAGGAAC
>chr1A_282
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------TAGGCAGGGGCCTGTGTGTCTATTTACTTGTGCTACTGC
GTCAACTTGTCTAAACTTGGTTATGTCTGTTTATTTGTTTAGGGGCGTTGAATTGTTAAGGTTAACTTCATGAATCTTGG
TTCCTTATCGGTTGGCTTTATCTTCTTTTTTTTGGCTTTATCTATAAAGCTTGCAAATGTCTTTCATCTAAAAAAATGTT
TAGAGGAGGAAAAACCAAATTTATTCTTCTTTAACGCATTTTAGGGAATCGGCTAGAAATGATATAAGGGGTTATAGGAC
GAGAGAAGGGGGAAAGTGGTAAAATAGCATTTGCACAAGCCATCACAAGCGCTGAAAATGACCGAAAGAACACTGAACCG
CGAATCAGTCCCGCTTATTTAATTAG-------TATATCTTTTCGAAACAAAATTATACGCTCAAGCTGCTATTAGACGC
CTGCCAAGTGCAGTTTAATGTGGTGTCACATCAAATCATGGTAGAATTGACATGTGACATATCTCTCAAAGCAAAACAGT
CCAATGAAATCGACAAGCGACGCATCTGAGAACCTTCGGATCAGCTTTGGGAAACATCCTGGAAGCATGCTTGGCCGTAG
AACCGGGTGTATAAATGGCAAAGCTTGCACGACACAATATTTATTCAGGCACAAGCCAATCTACACATGCAACTGGCGAC
CAACGAGTAGTTAGCTAGTGGTGTAACAAGTA-TAGCTAGTACAGTAATGGCGGCTTCGTTGGGACTGAACCCTGAATGT
GTATTCAGCTCCGCCTACGCCTACTCCTCCCCTTTCCTGGCCGATTACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCACCA
CCCTTTCGATCAGTTCGAGCACTCGCTGCCGACGCCGACGGCACAGATCTCCTTCGCCGGAGCCGGGGATGACGAACATC
GCGGCGAGAAGAAGATCAAGATCAGTGCGAGGGTGAGCTCAGGGAGGATCGGGTTCAGGACGAGGTCAGAGGTGGAAATC
TTGGACGACGGGTTCAAGTGGAGGAAGTACGGGAAGAAGGCGGTGAAGAACAGCCCGAACCCGAGGAACTACTACCGGTG
CTCGGCGGAGGGCTGCGGCGTCAAGAAGCGCGTGGAGAGGGACCGCGACGACCCCCGCTACGTCGTCACCACCTACGACG
GCGTCCACAACCACGCAACGCCCGGCGCCGCCGCGCAGTACTACTGCTACAGCCCCCCGCGCAGCTCGCCGCCGGCAGCG
TATTCCGCCGCTGGCCTACTGCAATTCTGAACCAAACCAGCTAATTCCGTTCTGCTCCTCGTACAGTAGAAACTGGAAAG
CTCAAAACTTCTGTTTTTTGCCGATCGATGGATGTCGTCGTCGGTTCGAGTTATTTTATACATGACATGATGTATGTAGG
TTAGTATTGTTCAACTTGCAGCCAGATTGCTAATTTAGTCCAAAATTATCAAGCACGAATAGAGGGAGGGCTCTAAAATT
TGGATCGGCGACTTCTGGTTTGCTTGCTTGTTAAGTTTCTTATCACCCACCCACCCACACACACAAAAGAAAAACGTTTC
TCCTTGC---------ATGATTAGGCGCTTCTTGACTTAATTCAACGGCCTGCATTTTCTCCATCAGTCAAATAAACGGG
TACTCCCTCTGTAAACTTTTATAGAATCGTTTAGATCATTAAAATAGTAATCTAAACATTTTTATATTTATTTACAGAGA
GAGGAGAATACTTGAATCCCCATTCAGCGTGCCACCTGAATGCTCAATCGTGTAATCTATA-------------------
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-------------------------------------------------------------TACAATGTT----------
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>chr2D_2072
TACAT---------------------------------------------------------------------------
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---------------------------------------------------------TTTTTTT-ACGGGAAAGCT--TA
CTTTATTAATTAAAGGACGGATATATCGTCTGCTAGCAG----ACTCACAATGAAATCAGGCGGGGCATCAATCCAACGA
GATGGATTATTAGCACGTCCC-ATCTAGCCAGCTCATGAGCTACATAATTTGACTCTCTAATACAATGCTCAATAGTAAA
CCTTCCGAAATCTACTAGATAACTACGACATTCATCAAGAACCGGCGCTGCCACCATAGAGTAACCTTCATTGAATTTAA
GTGCATCCACCATCGTGATATTATCCGATCTCACCACCAAGTTATTGCATCCCGTATCTCTTGCTAGCTTCAGTCCTTCA
AGCAGAGCTGCCGCTTCTGCCGTGAACACATCAGCTACATGTTCTAATCTCGCTGTGGACGCCGACATGAAAGATCCCCG
GTGATCACGGATGACAGCACCACAAGACCCTGCATAATCGCCCTCTGTGAATGAAGCATCGACATTAAGGACAAGTTGTC
CTGCTAGGAAC
>chr1D_2079
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---------------------------------------------------------TTTTTTTGACGGGAAAGCT--TA
CTTTATTAATCAAAACGTGGATATATCGTCTGCCAGCAG----ACTCACAATGAAATCAGGC-GGGCATCAATCCAACGA
GATGGATTATTAGCACGTCCCCATCTAGCCAGCTCATGAGCTACATAATTTGACTCTCTAATACAATGCTTAATAGTAAA
CCTCCCGAAATATACTAGATAACTACGACATTCATCAAGAACCGGCGCTACCACCATAGAATAACCTTCATTGAATCTAA
GTGCATCCACCACCGTGATATTATCCGATCTCACCACCAAGTTATTGCATCACGTATCTCTTGCTAGCTTCAATCCTTCA
AGCAGAGCTGCCGCTTCTGCCGTGAACACATCAGCTACATGTTCTAATCTCGCCGTGGACGCCGACATGAAAGATCCACG
GTGATCACGGATGACAGCACCACAAGATCCTGCATAATCGCCCTCTGTGAATGAAGCATCGACATTAAGGACAAGTTGTC
CTGCTAGGAAC
>chr1D_2079
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---------------------------------------------------------TTTTTTT-ACGGAAAAGCT--TA
CTTTATTAATCAAAGGATGGATATATCGTCTGCCAGCAG----ACTCATAATGAAATCAGGCGAGGTATCAATCCAACGA
GATGGATTATTAGCACGTCCCCATCTAGCCAGCTCATGAGCTACATAATTTGGCTCTCTAATACAATGTTCAACAGTAAA
CCTCCCGAAATCTACTAGATAACTACGACATTCATCAAGAACCGGCGTTGCCACCATAGAATAACCTTCATTGAATCTAA
GTGCATCCACCACCGTGATATTATCCTATCTCACCACCAAGTTATTGCATCCCGTATCTCTTGCTAGCTTCAGCCCTTCA
AGCAGAGATGCCGCTTCTGCCGTGAACACATCAGCTACATGTTCTAATCTCGCCGTGGACGCCAACATGAAAAATCCCCG
GTGATCACGGATGACAGCACCACAAGACCCTGCATAATCGCCCTCTGTGAATGAAGCATCGACATTAAGGACAAGTTGTC
CTGCTAGGAAC
>chr7D_2079
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---------------------------------------------------------TTTTTTT-ACGGGAAAGCT--TA
CTTTATTAATCAAAGGACGGATATATCGTCTGCTAGCAG----ACTCACAATGAAATCAGGCGGGGCATCAATCCAACGA
GATGGATTATTAGCACGT-CCCATCTAGCCAGCTCATGAGCTACATAATTTGACTCTCTAATACAATGCTCAATAGTAAA
CCTCCCGAAATCTACTAGATAACTACGACATTCATCAAGAACCAGCGCTGCCACCATAGAGTAACCTTCATTGAATTTAA
GTGCATCCACCACCGTGATATTATCCGATCTCACCACCAAGTTATTGCATCCCGTATCTCTTGCTAGCTTCAGTCCTTCA
AGCAGAGCTGCCGCTTCTGCCGTGAACACATCAGCTACATGTTCTAATCTCGCCGTGGACGCCGACATGAAAGATCCCCG
GTGATCACGGATGACAGCACCACAAGACCCTGCATAATCGCCCTCTGTGAATGAAGCATCGACATTCAGGACAAGTTGTC
CTGCTAGGAAC
>chr7D_2079
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---------------------------------------------------------TTTTTTT-AC-GGAAAGCT--TA
CCTTATTAATCAAAGGACGGATATATCGTCTGCCAGCAG----ACTCACAATGAAATCAGGCGGGGCATCAATCCAACGA
GATGGATTATTAGCACGTCCCCATCTAGCCAGCTCATGAGCTACATAATTTGACTCTCTAATACAATGCTCAATAATAAA
CCTCCCGAAATCTACTAGATAACTACGACATTCATCAAGAACCGGCGCTGCCACCATAGAATAACTTTCATTGAATCTAA
GTGCATCCACCACTGTGATATTATCCGATCTGACCACCAAGTTATTGCATCCCGTATCTCTTGCTAGCTTTAGTCCTTCA
AGCAGAGCTGCCGCTTCTGCCGTGAACACATCAGCTACATGTTCTAATCTCGCCGTGGACGCCGACATGAAAGATCCCCG
ATGATCTCGGATGACAGCACCACAAGACCCAGCATAATCGCCCTCTGTGAATGAAGCATCGACATTGAGGACAAGCTGTC
CTGCTAGGAAC
>chr5B_2079
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---------------------------------------------------------TTTTTTT-ATGGGAAACCT--TA
CTTTATTAATCAAAGGATGGATATATCGTCTGCCAGCAG----ACTCACAATGAAATCAGGCGGGGCACCAATCCAACGA
GATGGATTATTATCACGTCCCCATCTAGCCAGCTCATGAGCTATATAATTTGACTCTCTAATACAATGCTCAATAGTAAA
CCTCCCGAAATCTGCTAGATAACTACGACATTCATCAAGAACTGGCGCTGCCACCATAGAATAACCTTCATTGAATCAAA
GTGCATCCACCACCGTGATATTATCCGATCTCACCACCAAGTTATTGCATCTCGTATCTCTTGCTAGCTTCAGTCCTTCA
AGCAGTGCTGCCGCTTCTGCCGTGAACACATCAGCTACATGTTCTAATCTCGCTGTGGACACCGACATGAAAGATCCCCG
GTGATCACGGATGACAGCACCACAAGACCCTGCATAATCGCCTTCTGTGAATGAAGCATCGACATTAAGGACAAGTCGTC
CTGCTAGGAAC
>chr1B_2079
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---------------------------------------------------------TTTTTTTGACGGGAAAGCTTATA
CTTTATTAATCAAAGGATGGATATATCGTCTGCCAGCAG----ACTCACAATAAAATCAGGCGGGGCATCAATCCAACAA
GATGGATTATTAGCACGTCCCCATCTAGCCAGATCATGGGCTACATAATTTGACTCTCTAATACAATGCTCAATAGTAAA
CCTCCCGAAATCTGCTAGATAACTACGACATTCATCAAGAACCAGCGCTGCCACCATAGAATAACCTTCATTGAATCTAA
GTGCATCCACCACCGTGATATTATCCGATCTCACCACCAAGTTATTGCATCCTGTATCTCTTGCTAGCTTCGGTCCTTCA
AGAAGAGCTGCCGCTTCTGCCGTAAACACATCAGCTACATGTTCAAATCTCGCCGTGGATGCCGACATGAAAGATCCTCG
GTGATCACGGATTACAGCACCACAAGACCCTGCATAATCGCCTTCTGTGAATGAAGCATCGACATTAAGGACAAGTTGTC
CTGCTAGGAAC
>chr5D_2079
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---------------------------------------------------------TTTTTTT-ACGGGAAAGCT--TA
CTTTATTAATCAAAGGACGGATATATCGTCTGCTAGCATACATACTCACAATGAAATCAGACGGGTCATCAATCCAACGA
GATGGATTATTAGCACGTCCCCATCTAGCTAGCTCATGAGCTACATAATTTGACTCTCTAATACAATGCTCAATAGTAAA
CCTC-CGAAATCTATTAGATAACTACGACATTCATCAAGAACCGGCGCTGCCACCATAGAATAACCTTCATTGAATTTAA
GTGCATCCACCACCGTGATATTATCCGATCTCACCACCAAGTTATTGCATCCCGTATCTCTTGCTAGCTTCAGTCCTTCA
AGCAGAGCTGCCGCTTTTGCCGTGAACACATCAGCTACATGTTCTAATCTCACCGTGGACGCCGACATGAAAGATCCCCG
GTGATCATGGATGACAGCACCACAAGACCCTGCATAATCGCCCTCTGTGAATGAAGCATCGACATTAAGGACAAGTTGTC
CTGCTAGGAAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--S---S------S---S---------
---------------------------------------------S----------------------SS----------
---S--S--S--------------S--S------------S----------S----------------------------
------------------S--SS-SS---------S--------------S----S----------------S-----S-
-----------S----S-----------------------S------------------------------S--------
-------S--S---------------SSSSSSS--------------------------------------------S--
-----------------S-------------------S------------------------------------------
-------------------------------------------------------------S------------------
---------------------------------------------S---------------------S-----S------
----S----S-SSSS------------SSSS-S--------------------------------------------S--
----------------S----S-------S----------S----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
------------S------S------S-----S-------------S----S--------S------------S------
--S---------S------S------------------S-----------------------------------------
--------------------------------------------------------------------------------
-------------------S--------------------------------------------------------S---
----------------------------------S---------------------------------------S-----
----------------------------------------------------------S---------------S-----
----------------------------S-----------------------S--S------S----------------S
----S--------------------------------------------SS-----------SS----------------
-------------------------------S--------SS-SSSSSSS--SSS------------SS---S-S---S-
-----SSSSSSSSSSS--------------------------S----------S--------------------------
--SS----------------------------------------------------------------------------
----------------------------S--------------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
---------------------------------------------SS--------------S------------------
--------------------------------------------------------------------------------
------------S-----------S--------S-S--------S-----------------------------------
------------------------------------S-------------------------------------------
------------------S----------------------------------------S----S---------------
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-----------
>forward_970
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----------------------------------------------------------------------AACCGGCGAC
CAACTAGTAC----------------------------------------------------------------------
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>reverse_2131
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--------------------------------------------------GAGCACGAATAGGTGGAGGG----------
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