>input_sequence_75041
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------------------------------------------------------------------------------AT
GGCGGGGCCACTCAGCGCCACGCGGCGCACGCGTCCGACGCCGGCGCAGTGCATCGCGGCGACGCTGTTCGCGCTGCTCG
TCGTCGTCGCCATCATCGTCATCATCTGGCTGGCGGTCCGGCCCGGGAAGCTGCACCTCTCCGTCGACCACGCGGCGGTC
CGCGGCTTCAACTTCACTTCGGGGGGCGCGCTGCAGGGCACCTTCGCCCTCGTCCTCCGCGCCTACAACCCCAACAAGCG
CACCGCCGTGTACCGCTCGCTCGACGTCGGGGTGTGGTACGGCGACACGTACCTGGGCGGCGCCAAGGTGCCGGGGTTCC
GCCAGCCGCCGCACAACGAGACGAGGATCGTCGTGGCGGCCCCCGCGGCGCGGGAACCGCTGCCGCAGGACGTGGAGCGG
GAGATGAAGAAGGACCGGTCCGCCGGGAGGCTGCCGCTGGACGTGCACGTCCGAGGCAAGGTGTGGTTCAAGTACGGTCT
GGTGAGGACGCGGCGGTACAAGGTGCGCGCGAGCTGCCCGCTGGTGCCCGTCGACTTCGCCTCGCCCAGCTCCTTCGACC
GGGTCTACTGCCACGTGCATATCTGA------------------------------------------------------
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>chr6B_1_TraesCS6B01G279500
TCGTTTATTTGCTCAGAAAAGGAATTCCTGCTAATCCTGGTAGCTTTGGACTCTGCTTTGGAGATTTCAGATGCAAAAAT
GCTACACCTACGGACAACTTCTACGTAACCTACGTAATCCCTTTCCCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAATGGCCAATAAATATCTGCCAACTCAGCTCATACGTAAGATACGTAACAAATATTACGTAGGTGTAGCATTG
CTCTTTCAGATGGATGAATATCAGGAAGGCGCGAGACCTTTCTCCCGAGTCCTCCGCATTCTT-GGTTCTTCCGTAAACC
CCAGTCTTTCGATCCAAAAGTAAAAAAAGTTCCACATGTGATGTGAGCGCACCATTCGTGGGCTGTCAATATGCTTTCCC
TTTCCTTGCCGCACATCGATTCCTACGGAGTAGGAGTGAGCCAGAAGGATTCCAAAACCAAAGCTCCTTCC--------G
AACTCACGACGAATTGACCGCTGCCTGTGAAAGAA-----CTCGTTGCACCACCACCACGGCTGGCGGCTCGTCGCATGC
ACAACGTACCAAAACCGCCTGCTAC------TCCAACCACAGGCTGTGACAACTGAC---AACCTCCCCTCGCTACTCAA
AGCATCGCCCT-------GCAGCTCACTATATAGAGACGCGGCGACGCAATCCGTTTCCAACAAGCCAAGACACAGGACC
TCTCTCCCACGGCATAGAATCTAGCTAGCTCAAGCAGTGCATCGTCTTAAGCTCCGGGACGAAGGC----AGGG----AT
GGCGGGGCCACTCAGCGCCACGCGGCGCACGCGTCCGACGCCGGCGCAGTGCATCGCGGCGACGCTGTTCGCGCTGCTCG
TCGTCGTCGCCATCATCGTCATCATCTGGCTGGCGGTCCGGCCCGGGAAGCTGCACCTCTCCGTCGACCACGCGGCGGTC
CGCGGCTTCAACTTCACTTCGGGGGGCGCGCTGCAGGGCACCTTCGCCCTCGTCCTCCGCGCCTACAACCCCAACAAGCG
CACCGCCGTGTACCGCTCGCTCGACGTCGGGGTGTGGTACGGCGACACGTACCTGGGCGGCGCCAAGGTGCCGGGGTTCC
GCCAGCCGCCGCACAACGAGACGAGGATCGTCGTGGCGGCCCCCGCGGCGCGGGAACCGCTGCCGCAGGACGTGGAGCGG
GAGATGAAGAAGGACCGGTCCGCCGGGAGGCTGCCGCTGGACGTGCACGTCCGAGGCAAGGTGTGGTTCAAGTACGGTCT
GGTGAGGACGCGGCGGTACAAGGTGCGCGCGAGCTGCCCGCTGGTGCCCGTCGACTTCGCCTCGCCCAGCTCCTTCGACC
GGGTCTACTGCCACGTGCATATCTGAGTGGTACGTACGTGGTGCAGGTGCAGGGCCGCGCGACGGGGAG-CCCGGGCACG
TACATATTATACGGTGTGTGTTTGCTT-----GTGTGGTGTCTTTGGTCTGAGGATTCGTTCCCCATGCTTTGGGTTATT
GGTT---TGATACATGTTGTTCTTAATCAATCTTCGTTTGTATTACGGTTGGGTTTGTGTATTCTTTGATGTAACTAATC
AGACCTCCCATGGATTGTCACACA--TTTAAGTGCCAAATTCTTTATGGAAAATTGCAAGTGTATGACTATACACGACAC
ATGGCTATCCCTTTTTTCTCTCCTCTAATAAGAACATCAAGCATATCATTTTCGTGCAACTTCTCCGAGCTCACCGCCCA
CATACACCAACTTTAGCCCACTGGA-------------------------------------------------------
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-------------------------------------------------------------------------AATCATC
ATCTTTTTCAGCCTCTTCTACCAAGAGAATGTTCCTTCTTGCATTGGATTTGGACCATACCAGCCTACCAGGGGCTAACA
CGTGCTTCATCGCATCGTTCTTGTTCTTGC-GGTGTTT--TTTTCATTCATATATCG-------TGTGGGGCTGCTGTTG
GAGACTGTATTTGTTCTGAGATGGGTGTGAAGTTGTTTGTTGTATGATTGTGGTGTCCTTACATGTTTAAGGAGTCGGTG
TTAGCCGATGATGGTTATGTGGGCCCCTTGGGAGCTCATACTTCATG-TTGAAACCATAGAAGTGCTTCTACAACTTACA
TGA-CTGGCCAATGAAGTTCCCGCTTGTTCAGCTCAGCTCCTTGCCCCGCTCGCTCACG---------------------
-----------CGGAATAACCGGCTATCATATTTACTTTACTTAATTGAATAGTTCGGTCAATAAAAAAGATGTACACTA
GTTTGAAAAAATCTTGAATTTTTAATTTTTAAAAACATGAATTTTAAAAATAGTGTGGATTTGAAAAAAGGTTCGCTAAT
TTTTAAAAATATAGATATTGTAAAAAATTCATGAACTTTATAAATACTCATGAATTAAAAAATATTCAAGAATTTGTTTT
TAATAATAA
>chr6D_484
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---TTTCAGATGGATGAAAATCAGGAAGGCGCGATACCTTTCTCCCGACTCCTCCGCA--------TTCTTCTGTAAACC
CCCGTCTTTTGATCCAAAGTAAAAAAAAGCTCCACATGTGATGTGAGCGCACCATTCGTGGGCTGTCAATATGCTTTCCC
-TTCCTTGCCGCGCATCGATTCCTAC---GTAGGAGTGAGCCAGAAGGATTCCAAAACCAAAGCTCCGCCCAAACTCTAG
AGCCCACGGCGAATTGACCGCTGCCTGCGAACGAA-----CTCGTTGCACCACCACCACGGCTGGCGGCTCGTCGCATGC
AAAACGTACCAAAACCGCCTGCTACGTATACTCCAACCACAGGATGTGACACCTCGCAGAAACCTCCCCTCGCCACTCAA
AGCATCGCCCTGCAGGCTGCAGCTCACTATATAGAGACGCGGCGACGCAATCCGTTTCCAACAAGCCAAGATAGAGAAGC
TCGAG--CCTAG---AGAATCTAGCTAGCTCAAGCAGTGCATCGCCTTAAGCTCCGGGGCGAAGGAAGGAAGGG----AT
GGCGGGGCCACTGAGCGCGACGCGGCGCACGCGCCCGACGCCGGCGCAGTGCATCGCGGCGACGCTGTTCGCGCTGCTCG
TCGTCGTGGCCATCATCGTCATCATCTGGCTGGCGGTCCGGCCCGGGAAGCTGCGCCTCTCCGTCGACCACGCCGCGGTC
CGCGGCTTCAACTTCACGTCGGGGGGCGCGCTGCAGGGCACCTTCGCCCTCGTCCTCCGCGCCTACAACCCCAACAAGCG
CACCGCCGTGTACCGCTCGCTCGACGTCGGCGTGTGGTACGGCGGCACGTACCTGGGCGGCGCCGAGGTGCCGGGGTTCC
GCCAGCCGCCGCGCAACGAGACGAGGATCGTCGTGGCGGCTCCGGCGGCGCGGGAACCGCTGCCGCGGGACGTGGAGCGG
GAGATGAAGAAGGACCGGTCCGCCGGGAGGCTGCCGCTGGACGTGCACGTCCGGGGCAAGGTGTGGTTCAAGTACGGCCT
GGTGAGGACGCGGCGGTACAAGATGCGCGCGAGCTGCCCGCTGGTGCCCGTCGAGTTCGCCTCGCCCAGCTCCTTCGACC
GGGTCTACTGCCACGTGCATATCTGAGT------------------------------------------CCCGTGCACG
TACATATTATACGGTGTGTGTCTGCTTTGCTT-----GTGTGTTTGGTCAGAGGATTCGTTCCCCATGCTT-GGATTATT
GGTTTGATGGTACATGTTGTTTTTATTCAATCTTCATTTGTATTACGATTGGGTTTGTGTATTCTTTGATGTAACTAATC
AGACCTCCCATGGACTGTCACATATTTTTAAATGCCAAATTCTTCATGGAAAATTACAGGTGTATGACTATACACGACAC
AGAGTTGTCCTTTTTTTTCTCT-TCTAATAAGAACATCAAGCATATCATTTTCGTGCAACTTCTCCAAGCTCACCGCCCA
CATACACAACCTTTAGTCCACTGGA-------------------------------------------------------
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-------------------------------------------------------------------------AGTCATC
ACCTTTTTCAGCCTCTTCTACCAAGAGAATGCTCCTTCTTGCATTGGATTTAGACCATACCAGACTACCAGAGGCTAACG
CATGCTTCACCGTGTCGTTCTTGTTCTTCGTGGTGTTT--TTTTCATTCATATATCGACACACATGTGGGGCTGCTGTTA
GAGACTGTATTTGTTCTGTGTGAGGAGTGGAGTTATTTGGTACGTGGTTGTGATATCCTTACATGTTCTGGTAGCA-GTG
TTACCCGATGATGGTTATGTGAGCCCTTTTTAAGCTCCTATTCCACGATTGAAACCATGAAATTGCTTATGTAACTTACA
TGGGCTGGCCAATGAAGTTCTCGCTCGCTCAGCTCAGCTCCCTACCCCGCTCGCTC------------------------
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>chr6A_501
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--------------------TCAAGAAGGCGCGAGACCTTTCTCCGGAGTCCTCCGCATTCTTGGGTTCTTCCGTAAACC
CCCGTCTTTTGATCCAAAAGTAAAAAAAGCTCCACATGTGATGTGAGCGCACCATTCGTGGGCTGTCAATATGCTTTCCC
-TTCCTTGCCGCGCATCGATTCCTAC---GTAGGAGTGAGCCAGAAGGATTCCAAAACCAAAGCTCCGCCCAAACTCTAG
AGCCCACGGCGAATTGACCGCTGCCTGTGAAAGAAAAGAACTGGTTGCACCACCGCCACGGCCGGCGGCTCGTCGCATGC
AAAACGTACCAAAACCGCCTGCTACGTATACTCCAACCACAGGCTGTGACACCTCGCAGAAACCTCTCCTCGCCACTCAA
AGCATCGCCCC-------GCAGCTCACTATATAGAGACGCGGCGACGCAATCCGTTTCCAGCAAGCCAAGACAGAGCACC
TCTCTCTCCCAC---AGAACCTAGCTAGCTCAAGCAGTGCGTCGTCTTGAGCTCCGGGGCGAAGGAAGGAAGGGATCAAT
GGCGGGGCCACTGAGCGCGACGCGGCGCACGCGCCCGACGCCGGGGCAGTGCATCGCGGCGACGCTGTTCGCGCTGCTCG
TCGTGGTCGCCATCATCGTCATCATCTGGCTGGCGGTCCGGCCCGGGAAGCTGCAGCTCTCCGTCGACCACGCGGCGGTC
CGCGGCTTCAACTTCACGTCGGGGGGCGCGCTGCAGGGCACCTTCGCCCTCGTCCTCCGCGCCTACAACCCCAACAAGCG
CACCGCCGTGTACCGCTCGCTCGACGTCGGCGTGTGGTACGGCGACACGTACCTGGGCGGCGCCGAGGTGCCGGGGTTCC
GCCAGCCGCCGCGCAACGAGACGAGGATCGTGGTGGCGGCCCCCGCGGCGCGGGAGCCGGTGCCGCGGGACGTGGAGCGG
GAGATGAAGAAGGACCGGTCCGCCGGGACGCTGCCGCTGGACGTGCACGTCCGGGGCAAGGTGTGGTTCAAGTACGGCCT
GGTGAGGACGCGGCGGTACAAGATGCGCGCGAGCTGCCCGCTGGTGCCCGTCGACTTCGCCTCGCCCAGCTCCTTCGACC
GGGTGTACTGCCACGTGCACATCTGAGTGGTAGGTACGTGGTGCTGGTGCAGGGCCGCGCGACGGGGAGTCCCGTGCACG
TACATATTATGCGGTGTGTGTTTGCTTTGCTTGTGTGGTGTGTTTGGTCAGAGGATTCGTTCCCCATGCTT-GGATTATT
GATTTGATGGTACATGTTGTTTTTATTCAATCTTCATTTGTATTACGATTGGGTTTGTGTATTCTTTGATGTAACTAATC
AGACCTTCCATGGATTGTCACACA--TTCAAGTGCCGAATTCTTTATGAAAAATTGCAAGTGTATGCCTATACACGACAT
AGGGCTATCCTTTTTTTTTCT-CTCTAATAAGAACATCAAGCATATCATTTTCGTGCAACTTCTCCAAGCTCACTGCCAA
CAGACACCACCTTTAGGCTGGTCATAGTGGGAAGTAACTTATACTAGTGTCATGCATATGACACTAGTCTAAGTTACTAC
ATTCATAATGCAAAGTATCTTAATAGTAGTGTCATAGATAGTTTCATTTATTGCCTCATAGACTCATTTTACTTCGGAAA
ACGCTATGTTACAGTAACATATTATGTTACTCCAAGCATCTCTCTTCTTATTAAATACTTGCCACATAAGCAAAATTGTC
TTGGGGTGTGTTAAGTTACTACCTAAGTTATCCCACTATGGCTAGCCTTAGACTGGTCACAGTGGGAGTAACATCACTAG
TAACATCACACTTTTCAAGATAGTTTTGCTTATGTGGCACATATTTAATGATGAGAGAGGTGATGGTGGTAACTTAGCTA
GTTACTGTAACATCACACATACCAAGACAATATGAGTCTATAGGCTAATAAATGAACCATAACATGACAACACACATATG
TTACTACCGGTAGTAACATAGCCTAATAAAATGTGATGTTACTAGTCTAAGTTACTCCCCATTATGATTAGTCAGTCATT
ATCTTTTCCAGCCTCTTCTACCAAGAGAATGTTCCTTCTTGCATTGGATTTAGACCATACTAGCCTACCAGAGGCTAACG
CATGCTTCACCGTGATGTTCTTGTTCTTTGTGGTGTTTTATTTTCATTCATATATC-------ATGTGGGGCTGCTGTTA
AAGACTGTATTTATTCTACATGGGGAGTGGAGTTGCTACGTGGT----------------------------------TG
TTAGTCGATGATGGTTATGTGAGCCCCTTGTGAGCTACTATTCCAC-ATTGAAACCATGAAATTGCTTATGTAACTTACA
TGGGATGGCAATTGAAGTTCCCGCTCGCTCAGCTCAGCTCCATGCCATGCTCACTCGCTTAGTTTTTTTCCCATTGGCTT
CACTTCTAGCTCGGAATAACAGGCTATTGTATTTACTTTATTTGGTTGAATAGTTCGGTCAATAAAAAAGATGGCACTAT
TTTTT--AAAATCTTGATTTTTTAA-------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---------------S-------------------------------------------------------------
--S------S-------------------S--------------------------------------------------
S-----------S-------------SSS--------------------------------------SS-----------
-S-S----S-----------------------------------------------------------------------
-S-------------------------------------------------S--SS-----------------S------
-------------------------------------------------------------------------S--S---
------S-S-S-SSS-------------------------------------------S------S--------------
------------S-----S--------------S----------------------------------------------
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-----------------S--------------------------------------------------------------
------------------------------S---------------------------------S---------------
------------S-----------------------------------------------------S-------------
-----------------------------------------------------S-----------------------S--
----------------------S---------------------------------------------------------
--------------------------------S-----------S-----------------------------S-----
-----------------------------------------S-------S---------------------S--S-----
---------S-----------S---S---------S-----------S--------------------------------
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-S--------S------S---S--------------------------------------------S-------------
---------S------S---------------------------------------------------------------
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--------------------------------------------------------------------------S-----
---------------------------------------------------S-------------------S-------S
-S-------S--SS--------------SS-------------------------------------------------S
------------------S-SS---S---S---------S--SS--S-----S-S------------SSS-S--SSS---
---------------------S--------S------S--S-S--S------------SS--S-----S-SS--------
--S----------------------S-S-------------S--------------S-S---------------------
--------------------S------SS-----------S--SS----------------------------SSSSSSS
S---SSS----------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_669
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---------CGCACATCGATTCCTACGGA---------------------------------------------------
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>reverse_2906
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-------------------------TGTTCAGCTCAGCTCCTTGC-----------------------------------
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