>input_sequence_75039
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------------------------------------------------ATGCGCCATCCAACGGCTCACGCATCGTGCGG
CACAAGAAAAAAGAGGCG--TCACTTGCCGAAGCTACCCGCTTCAGTCCCGAGCTCTCGGACCCAGATGGCATCCGCCTC
GCCGGAACCCGCAGCGACCGAGACCGGCGACTCCGTCAAAATCCGCCGCCTAGAGATCGCCGACCGCGAGAGGGGCTTCC
TACCCCTCCTCTCCCAGCTCTCCTCCTGCCCGGACCTCACCGAGTCCGAGTTCGCCGCGTGCTTCGCCAACCTCGCGGCC
CTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCGGCTCCGGAGCGGCGGATCCTCTCCACGGGGTGCCT
CTTCGTGGAGCGCAAGTTCCTCCGCGGCGGCGGCAAGGTGGGGCACGTGGAGGACGTGGTGGTCGACGCCGCCGCGCGCG
GCCGGGGGCTCGGGCTCCGCGTCGTGCGCCGCCTCGTGGAGACGGCGAAGGACGCCGGCTGCTACAAGGTCATCCTGGAC
TGCACCCCGGAGCTGCGCGCCTACTACGCCAAATGCGGCTTCGTGGAGAAGGGGGTTCAGATGGCCGTGTACTTCTGA--
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>chr6A_1_TraesCS6A01G281300
ATCTTCTAGCAGCCT-CCTGGTCCTGAAGGTCTGAACAAGTCTGGCAAATGGTGATATTTTCATTCTAAGCATCCAT---
-AGAGCCTCTGTATCGTTGCAGTTGTATATGTAGTTTAGATTGGCGATCCTCTCCTGCTCCTGCATAAGCAT-TGAAGCA
TATCTGATGACAGGTCTCTCGGCACGACGAACAACTCTCTTGTGCATGAACATGACCCATGCCTGAATCATAGCTATCAG
TGCTCCTGCTTGAAATACCAACCACATCTGTGCGTCCATAACCTAGTCCACATCGAGGGTGCGTTGAGCAATGGGAAAAT
CGATCCTACACCTTGTCTAACGGCCTAACAACACACATAACTTAGGGGACGGGCGATGTTGCTTACCGGCATCAGAGACG
AGGACGACGAAG-------GGGGATCACGGCTGAGTGAAGGACGATTCGGCAGTTT------------------------
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-----------CTGACTCGCTAGGAATTGCCGATTCGACAGTTTATGACGAGCCAGGCTGAGGGCTGCTTTAAGCTTCGT
GCGGATGCGAGCCAGCCCACTATGTGCGCAACCAAATGCACATTTCGTGGCCCAACTGGGCCTGGTTGCGATTTCGTGGG
CAACCAAACGTGCCCTAAGGTATGATTATTTGTTTCTCCCTACACAACTTCTTCTCCTACATTTGTTCTCATGACAGCCT
CTCTCTTCCACCGGAGCCTCAACCCTCCATCCATTGTTGTTCCAGGTCCTTTTCTTCTCCCTTTTGCGGTGGTTGTCGCC
ATGACGTTCAACCCTTACACACATCCTTTGATTTCCTCTCCCCCTCTATCCCTCTTCGTCTTTCTCAATTGCCCTTCTGT
TTCTTCTCGTCCGTGTCGTGTCTAAGTCATTGTCAGGCGAATGATCGCGTCGAAGATTTCTATTTTTTTTTCAACTAAGC
TTGAACCAGGGGGGCTTCTAAGCCTGCACGT----------------------------------------GCTTTGTTT
GCATTTGTAGCACTGATAGCAAATCGGCATGGCCAATCGAGGGCGTTGATGCGCCATCCAACGGCTCACGCATCGTGCGG
CACAAGAAAAAAGAGGCG--TCACTTGCCGAAGCTACCCGCTTCAGTCCCGAGCTCTCGGACCCAGATGGCATCCGCCTC
GCCGGAACCCGCAGCGACCGAGACCGGCGACTCCGTCAAAATCCGCCGCCTAGAGATCGCCGACCGCGAGAGGGGCTTCC
TACCCCTCCTCTCCCAGCTCTCCTCCTGCCCGGACCTCACCGAGTCCGAGTTCGCCGCGTGCTTCGCCAACCTCGCGGCC
CTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCGGCTCCGGAGCGGCGGATCCTCTCCACGGGGTGCCT
CTTCGTGGAGCGCAAGTTCCTCCGCGGCGGCGGCAAGGTGGGGCACGTGGAGGACGTGGTGGTCGACGCCGCCGCGCGCG
GCCGGGGGCTCGGGCTCCGCGTCGTGCGCCGCCTCGTGGAGACGGCGAAGGACGCCGGCTGCTACAAGGTCATCCTGGAC
TGCACCCCGGAGCTGCGCGCCTACTACGCCAAATGCGGCTTCGTGGAGAAGGGGGTTCAGATGGCCGTGTACTTCTGAAT
TCTGATCCATCCATGGGGTAATGCGCAACAGAGACTGCATTTCTTTGTCCCGTCGCATC-----TATCCCTTTGTCTGTG
GCAATCTGTTATCATA---TCATTATTCTGAACTTGTCTGTGTTAGTGACTGAGAATGCTATTTATGGAATCCCAACTTT
ATCATGTGGCTGTATGGCTTTGGCCTGTTTCTGCTGCGTTCATAAAAGAAAATTCCGTGCTATATTGTCTTGGTTAAATA
ACAGCGATAATTCTGTCGCTACTATAATGTTCCAAATATAGGCCAGTTAATCGCCATCTCGGTCAGTTAATTGCTACTCA
GGTGGGTCACCGAATAGCCGATAGTAACTGATTTATCAGCCGATTAACTGCTGATTCGCCTATTTATCCCTACTCAGCAC
CTGAA------GGTACCAGTTACCGATATCCTGAACATTGCCTACTAGTGTAAATCTTGAAAGTTACTACTAGTTCTTTC
GGTCAGTAAAGCTGTCGGGCTAAGCTTTGCCAACCATAGACAAGTGAACCGGGGATTTTCTGTTAGAGCTGAATGAAGTT
CTATGCATAGTACTGTAGATTGTAAACCATAACACCATCATAGTACCTGGTAGGAGCTGCTATAGTGAATCAAATCTTTC
TAGGCATTTACCAAATGAGCTAGCATAGACACATAATCATGCCTATTCAATCAAATTCTCTGTCATAAAGGTAATCATGT
CTAACAGTGTACTGTTATTGTTGCTGAAAGAACTTTTGGTACCGAGGCTCTTGACTCTTGAGGTTTCACTTTTAGAGATT
AGCCAACTGATGCCCCGTGTAAATATTCAACATGCATCACCCTATGGTTTGAGACATTTTGTGGAGTGCATGCTATTATG
GTTCTACGCAGCTGGGTGACACTGCTAGGGTCCTGGAGACGGTATCAAGATAGCCTGTGCATTTGCAGGAACATGATAAG
TACTCCCTCCATTCCAAAATATAGTGCGCCTGCACTTTCCGAGGTCCAACTT
>chr6B_1
ATCTTCTAGAAGCCA-CATGGTCCTGAAGGTCTGAACAAGTCTGGCAAGTGGTGCTTTTTTCATTCTAAGCATGCATCAA
CAGAGCCTCTGTGTCATTGCAGTTGTATATGTAGTTCAGATTGGCGATCCTCTCCTACTCCCGCATAAGCAT-TGGATCA
TATCTGATGACAGGTCTCTCAGCACGACGAACATCTCTCTTGTCCATGAACATGACCCATGCCTGAATCACTGCTACCAG
TGCTCCTGCCTGAAGTACCAGCCACATCCGCGCGTCCATAACCTAGTCCATATCGAGGGTGCGTTGAGCAATGGGGAAAT
CGATCCTACACCTTGTCTAACGGCCTAACAACACACCTAATTTAGGGGATAGGAGATGTTGCTTACCGGCATCGAAGACG
ATGAC--------GGGGAAGGGGGGCATGGCAGAGTGAAGGACGACCGGGCGACGGCCAAATGGAAGAGCAGCAACAGCT
CCTACTGTTGGATCTGCCGGCA---CCGCTT--------GCACAGATCTGAGTCACCGCTCGCCGGTGGTGGTGGGGCTA
GAGGAAGTGGTTGTCCTAGAGGTAGTGGTGACCGAGTAAATGGGTGGGGGT-----GGTGAGCCTAGATTTGGCATCGTG
ACGCCGCGCCCGATTTCCGCCTTCCGCCATCCCCACTCGCTTTTAGCCTGCCACCCCCTCCCCCCGCGTGCGAGCTTGCG
CCGCCCTCAGCCTGACTCGCTAGAAACTGCCGATTCGGTAACTTCTAGCGGGCCAGGCCGGGGGCTGCTTTAAACTTCGT
GCGGATGCGAGCCAGCCCACTATGTGCGCAACCAAACGCACATTTCATGTCTCAACTTGGGCTGGTTGCGATTTCGTGGG
CAACCAAATGCGCCCTAAGGTATGATTATTTGTTTCCCCCTACACAACTTCTCCTCCTACATTTGTTTTCATGACAGCCT
CTCTCTTTCACCGGAGCCTCAACCCTCCATGCATTGTTGTTCCAGGTCCTTTTCTTCTTCCTTTTGTGGTGGTTGTCGCC
ACGATGTTCAACCCTTACACACATCATTTGCTTCCC-CTCCCCCTCTATCCCTCTTCGCCTTTCTCAATTGCCCTTCTCT
TTTTTCTCGTTCGTGTCGTGTCTAAGTCATTGTCAGGCGAATGATTC------------------------CAACTAAGC
TTGAACCGGGGGGACTTCTAAGCCTGCACGTGCTTTAATCGCACTTGTAGCACTGATAGCAAATCGGCATGGCTTTGTTT
GCACTTGTAACACTGATAGCAAATCGGCATGGTCAATCGAGGGCGTTGATGCGCCACTCAACGGCTCACGCATCGTGCAG
CACAAGAAAAAAGAGGCG--TCACTTGCCGAAGCTACCCGCTTCAGTCCCGAGCTCTCGGACCCAGATGGCATCCACCTC
GCCGGAACCCGCAGCGACCGAGACCGGCGACTCTGTCAAAATCCGCCGCCTAGAGATCGCCGACCGCGAGAGGGGCTTCC
TATCCCTGCTCTCCCAGCTCTCCTCCTGCCCGGACCTCACCGAGTCCGAGTTCGCCGCGTGCTTCGCCGACCTCGCGGCC
CTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCGGCTCCGGAGCGGCGGATCCTCTCCACGGGGTGCCT
CTTCGTGGAGCGCAAGTTCCTCCGCGGCGGCGGCAAGGTGGGGCACGTGGAGGACGTTGTGGTCGACGCCGCCGCGCGCG
GCCGGGGGCTCGGGCTCCGCGTCGTGCGCCGCCTCGTGGAGATCGCGAAGGAGGCCGGCTGCTACAAGGTCATCCTGGAC
TGCACCCCGGAGCTGCGCGCCTACTACGCCAAATGCGGCTTCGTGGAGAAGGGGGTTCAGATGGCCGTGTACTTCTGA--
-----TCCATCCATGGGGTAATGCGCAACAGAGACTGCATTTCTTTGTCCCGTCGCATCTACAGTATCCCTTTGTCTGTG
GCAATCTGTTATCATA---TCATTATTCTGAACTTGTCTGTGTTAGTGACTGAGAATGCTATTTATG-AATCCCAACTTT
CTGATGTGGCTGTATGGCTTTGGCCTGTTTCTGCTGCGTTCATAAA--------CCGTGCTATATTGTCTTGGTTAAATA
ACAGCGATAATTCTGTCGCTACTATAATGTTCCAAATATCGGCCAGTTAATCGGCATCTCGGTCAGTTAATTGCCACTCA
GGTGGGTCACCGAATAGCCGATAGTAACTGATTTATCAGCCGATTAACTGCTGATTCGCCTATTTATCCCTACTCAGCAC
CTGAACGATATGGTACCAGTTACCGATATCCTGAACATTGCCTACTAGTGTAAATCTTGAAAGTTACTACTCCCTCTGTT
CACTTTTATA----------------------------------------------------------------------
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-----AGTGTACAGTGATTGTTGCTGAAAGAACTTTTGGTACCGAGG-------CTCTTCAGGTTTCACTTTTAGAGATT
GGCCAACTGATGCCCCGTGTAAATATTCAACATGCATCACCCTATGATTTGAGACATTTTGTGGAGTGCATGCTATTATG
GTTCTACGCAGCTGGGTGACACTGCTAGGGACCTGGAGACGGTATCAAGATTGCCTGTGCATTTGCAGGAACATGATGAG
TA--------------------------------------------------
>chr6B_1
ATCTTCTAGCAGCCC-CCTGGTCCTAAAGGTCTGAACAAGTCTGGCAAATGGTGCC--TTTCATTCTAAGCATCC----A
CAGATCATGTGTGTCGTTGCAGTTGGATATGTAGTTCAGATTAGCGATCATCTCCTGCTCCCGCATAAGCAG-TCGAGCA
TATCTGATGAGAGGCCTCTCAGCACGACGAACAACTCGCTTGTGCATGAACATGACCCATGCCTGAATCACAGCTATCAT
TGCTCCTTCCTGAAGTACCAGCCGCATCCGTGCATCCATAACCTAGTCTACATCGAGGGTGCGTTGAGCAACGGGGAAAT
CGATCCTACACCTTGCCTAACGGCCTAACAACGCACTTAACATAGGGGAGAGGCGGTGTTGCTTACCGGTATCGGAGACG
AGGACGATGAAGTGGGGGGGGGGGGCATGGCTGAGTAAAGGACAATCAGATGGTGGCCAAATGGAAGGGCAACATCAGCT
CTTACTGTCGGATCTGCCGCCGCCGCCGCTT--------GCACAGATCTGAGTCGCTG-TCGCCAGTGGTGGTGAGGCTA
GAGGAAGTGGTTGTCCTAGATGCAGCGGTGACCGAATAAATGGGCGGGGG--------TGAGCCTAGATTTAGCATCGTG
CCACCGCACCCGATTTCCATCTCCTGGCACCCCCACTCGCTTTTGCCTTGCCCCCCCCCCCCGGTGT-------------
-----------------------------------------------GCGAGCCAGGCTGAAGGCTGCTTTAAGCTTCGT
GCGGATGCGAGCAAGGCCATTGCATTCACAACCAAACGCACATCTCGTGGTCCAAGCGGGCCTGGTTGCGATTTTGTGGG
CAACCAAACG----------------------------------------------------------------------
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>chr1B_1
ATCTTCTAGCAGCCCCCCTGGTCCTAAAGGTCTGAACAAGTCTGGCAAATGGTGCTCTTTTCATTCTAAGCATCC----A
CAGAGCCTCTATGTCGTTGCAGTTGTATATGTAGTTTAGATTGGAGATCCTCTCCTACTCCCGCATGAGCATTTGGAGCA
TATCTGATGATAGGTCTCTCAGCACGACGAACAACTCTCTTGTGCATGAACATGACCCATGCCTGAATCGCAGCTATTAG
TGCTTCGGCCTAAAGTACAAGCCACCTCCGTGCGTCCATAACCTAGTCCACATCGAGGGTGCGTTGAGCAATGGGGAAAT
CGATCCTACACCTTGCCTAATGGCCTAACAATGCACCTAACATAGGGGACAGACGGTGTTGCTTACCGGCATCAGAAACA
AGGAAGATGAAG-------GGGGGCCATGGCTGAGTCAAGGACGACCAGACAGTGGCCGAATGGAAGAGCAGCAACAGCT
CCTACTGCCGGATCTGCTGCCGCCACTGCCGTCATGTCCGCACAGATCTGAGTCACCT-TCGCCGGTGGTGGTGAGGCTA
GAGGAGGTGACTGTCCTAGAGGTAGCGATGACCGAGTAAATGGGTGAGGGGGGAGGGGTGAGCCTAGATTTGGTGCTGTG
TTGCCGCGCCCGATTTCCATCTCCCGCCATCCCCACTCTCTTTCGCCCTACCCCCTGCT---------TGCGAGCTTGCG
CCGCCCTCAGCCTGGCTCACTAGAAACTACCGGCTCGACAGTTTCTAGCGAGCCAGGCTGAGGGCTGCTTTAAGCTTCAT
GCGAATGCGAGCTAGCCCACTGTGTTTGCAACCAAACACACATTTCGTGGCCCAACTAGGCCTGGTTGCGATTTTGTGGG
TAACCAAACG----------------------------------------------------------------------
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>chr6D_973
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--------------------AAATCGGCATGGCCAATCGAGGGCGTTGATGCGCCCTCCAACGGCTCACGCATCGTGCAG
CACAAGAAAAAAAAGGCGTGTCACTTGCCGAAGCTACCCGCTTCAGTCCCGAGCTCTCGGACCCAGATGGCATCCACCTC
GCCGGAACCCGCAGCGACCGAGACCGGCGACTCCGTCAAAATCCGCCGCCTACAGATCGCCGACCGCGAGAGGGGCTTCC
TACCCCTCCTCTCCCAGCTCTCCTCCTGCCCGGACCTTACCGAGTCCGAGTTCGCCGCGTGCTTCGCCGACCTCGCGGCC
CTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCGGCTCCGGAGCGGCGGATCCTCTCCACGGGGTGCCT
CTTCGTGGAGCGCAAGTTCCTCCGCGGCGGCGGCAAGGTGGGGCACGTGGAGGACGTGGTGGTCGACGCCGCCGCGCGCG
GCCGGGGGCTCGGGCTCCGCGTCGTGCGCCGCCTCGTGGAGATCGCGAAGGGGGCCGGCTGCTACAAGGTCATCCTGGAC
TGCACCCCGGAGCTGCGCGCCTACTACGCCAAATGCGGCTTCGTGGAGAAGGGGGTTCAGATGGCCGTGTACTTCTGA--
-----TCCATCCATGGGGTAATGCGCAACAGAGACTGCATTTCTTTGCCCCATCGCATC-----TATCCGTTTGTCTGTG
GCAATCTGTTATCATACTATCATTACTCTGAACTTGTCCGTGTTAGTGACTGAGAATGCTATTTATGGAATCCCAACTTT
ATGATGTGGCTGTATGGCTTTGGCCTGTTTCTGCTGCGTTCACAAACGAAAATTCCGTGCTATATTGTCA-GGTTAAATA
ACAGCGATGATCCTGTCGCTGCTA--ATGTTCCAAATATCGGCCAGTTAATCGGCATCTCGGTCAGTTCATTGCTACTCA
GGTGGATCACCGAATAGCCGATAGTAACTGATTTATCAGCGGATTAACTGCTGATTCGCCTATTTATCCCTACTCAGCAC
CTGAACGATGCGGTACCAGTTACCGATATCCTGAACATTGCCTACTAGTGTAAATCTCGAAAGTTACTACTAGTTCTTTC
AGTCAGTAAAGCTGTCAGGCTAAGCTTTGCCAACCAAGGACAAGTGAACCGGGGATTTTCTGTTAGAGCTGAATGAAGTT
CTATGCATATTACTGTAGATGGTAAACCATAACACCATCATAGTACCTGGTAGGAGCTGCTATAGTGAATCAAATCTTTC
TAGGCATTTACCAAATGAGCTAGCATAGACACATAATCATGCCTATTCAATCAAATTATGTGTCATGAAGGTAACCCTGT
CTAACAGTGTACAGTGATTGTTGCTGAAAGAACTTTTGGTACCGAGG-------CTCTTGAGGTTTCACTTTTAGAGATT
GGCCAACTGATGCCCCTTGTGAATATTCAACATGCATCACCCTATGATTTGAGACATTTTGTGGAGTGCATGCTTTTATG
GTTCTACGCAGCTGCGTGACACTGCTAGGGTCCTCGAGACGGTATCAAGATAGCCTGTGCATTTGCAGGAACATGATAA-
----------------------------------------------------
>SNPs
--------------S---------------------------------------S-S-----------------------
------------S------------------------------------------------S-------------S----
--------------------S-------------------------------------------------S---------
---------S----S-----S-------S----------------------------------------------S----
------------------------------------S-------------S-----------------------------
-------S---------------SS--S------------------SS------SS------------------------
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-----------------------S--S-----------------S-SS--------------------------------
------------------------------------S-------------------------------------------
----------S-------------------------S---------------S--------------S------------
-------S----------------------S---------------------------S-------S-------------
-S--S--------------------S----S--S--S---------------------S-------------------S-
--S-------S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS---------
-------S-----S------------------------------------------------------------------
---S-----S--------------------------------------------------------------------S-
---------------------------------------------------------------------------S----
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--------------------------------------------------------------------S-----------
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------------------------------------------SS--------S---------------------------
------------------------------------------------------------------------------SS
SSSSS---------------------------------------------------------------------------
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--S-------------------------------------------S---------------------------------
---------------------------------------S-------------S--------------------------
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S---------------S-------------------SS------------------------------------------
---------S----------S-----------------------------------------------------------
---------------------------------------------------------S-S------S-------S-S---
------------S--S-------------------------------SSSSSSS--------------------------
S---------------------------------------------S---------------------------------
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--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_447
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---------------------------CGGCTGAGTGAAGGACGATT---------------------------------
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>reverse_2438
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-------------------------------------AGACAAGTGAACCGGGGATT-----------------------
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