>input_sequence_75005
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----------------------------------------------------------------------ATGAAGAGGA
AGCCCGTCGTGATCTGCTGCAGCGTGCTGCTCGCCCTCATCCTCGTCCTCGCCATCGTCTTCGTCGCGCTCTACTTCACC
GTGTTCCGGCCGCGCGCGCCGCACGTGGTGGCGACGGTGGTGAGCACGACGTTTACTCAATTCGACGTGACCTCCTTCCC
GCCCAAGGTCAACATGAGCTTGGGCGTGGACGTGACCGTGAAGAACCCCAACTACGCGGCGTTCCGTTACGGCGACGTGG
TGACGGAGCTGACGTACTACGGCTCGCCCGTGGGGCAGTCAGTGGTGCTCGCGGGGGAGGTCGGCGCGCGAACGACACAG
ACCGTCGGCGGGACGGTAGTGCTGCAGGCGGACAAGGTTGTGTTCACGCCCCAATTCGTCCAGGAACTGGCTTCCAAGTT
GCTCGACCTGCCGGATTTCATGCTGCCGTTCCAGACGAGGACGACGGTGGCCGGGAAGGCCGTGGTGCTGGGGACGTTAA
AAATCAGGGCCAGCTCGGCGGTGACTTGCAGCATCACCACCTACCCTCTCAAGCAGGAGACCACCTCCGACTGCACGTCC
ACGGTTAATGTCGGTTAA--------------------------------------------------------------
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>chr2B_1_TraesCS2B01G245500
ATTATTTATGAAGACTTTACAAAGTAGTACACCAGTTTGTTCGAAGCCACCACATCTTAGCAACAACTGTCGATATTTCT
AACCACTTGATGAAGGGGCGCCGATAGTCCAAGACTAATACCAAACAGGCATCGCACCAAAGCCTAACATCTAAAGCGGG
AGGCCCCAACCGAGCCACATACTGGGTTTTGAATACAAACCGGTCCAACGCACTCTCATGTGTCGTCGCCGTCGTCTTCC
ACCAATTCATCTTCAGAGCAGAAACTAACACACGATTTTGCCAGGCCTCTCTGTCATCGACGTCACCATGACGCCAGAGA
GCGTCCTCCTCCTGGGCGAGTCCATCTCCGCGCATCGGACACCGAGTCTCCATTGCCATGCCACCGAGATCCGCCGCCAT
CAATGAGTAAGATGAAGCGCCACTCCATCAAAGAAGCCGTCCACCGAGATCCGCCGCCATCAATGAGCAAGATTTGAGGA
GTGTTTGTCGGGCAAAATTGCTAAACTTGCCGGATTCAAATTTATGGCGAAACATATGTTCACTACCCTCAGGTAATATT
ATCTAACATGATGCAGTTACAGGAAAAGTTATGTACATG------------------TTGCTCTCTAGGTTCTTAGTTTC
ATTATTTTAGTTTCCCAGAAATCACACATGTATAAGTAC---TAACTTGTAGGCTAAGCAAACCAAACCAGCCGTTTAGT
TTGAGGTATAGCATGCGAGACGTACTTCTATACGTACTCCATCCTACATTTTACCGTTCTTCCCAGACCAGAGCCTGGGA
GATTTTCCAGACGCTCCCAAATCTGCAAACGAACCAAACAAAACAACACGGATAACAATGCATGCGCACACCAAGCCGAG
CAGCCAGAAACAAAATTCATCTGTAATCCCAATGAAACTTCCCGTCCTACATATGGCCGTCTCCTTTCCT--------GT
CCCATTGACATCTAAA-CCATAGACATTCATCAAAGGCTTGAAGAAGCACGCACCAGCCGATTCGATAGGATGAAGAGGA
AGCCCGTCGTGATCTGCTGCAGCGTGCTGCTCGCCCTCATCCTCGTCCTCGCCATCGTCTTCGTCGCGCTCTACTTCACC
GTGTTCCGGCCGCGCGCGCCGCACGTGGTGGCGACGGTGGTGAGCACGACGTTTACTCAATTCGACGTGACCTCCTTCCC
GCCCAAGGTCAACATGAGCTTGGGCGTGGACGTGACCGTGAAGAACCCCAACTACGCGGCGTTCCGTTACGGCGACGTGG
TGACGGAGCTGACGTACTACGGCTCGCCCGTGGGGCAGTCAGTGGTGCTCGCGGGGGAGGTCGGCGCGCGAACGACACAG
ACCGTCGGCGGGACGGTAGTGCTGCAGGCGGACAAGGTTGTGTTCACGCCCCAATTCGTCCAGGAACTGGCTTCCAAGTT
GCTCGACCTGCCGGATTTCATGCTGCCGTTCCAGACGAGGACGACGGTGGCCGGGAAGGCCGTGGTGCTGGGGACGTTAA
AAATCAGGGCCAGCTCGGCGGTGACTTGCAGCATCACCACCTACCCTCTCAAGCAGGAGACCACCTCCGACTGCACGTCC
ACGGTTAATGTCGGTTAACTATTTTTACCTGTGCGTGCGAGGAGCCCACACGGGCCGGGTGTCAATCAAGAACTGTGGGA
GTGAGTCACTTTTTTCGGTGAGTTTACAAGCTTTTCTCTTAGGTTAGAGGGTTTTGTATTTGTAT-AAATAAATAAT--A
GTACTATGCTACGTAGTCAACATTTTTAAGTGCACTCATACAATCAGTATTTCCCCGCGTGCGCCAATGTTTCCGAATTT
GTGCAGCCTGAGAATGCATGCAGAGAAAAATAAGAGATG---TTCTTCACAAGATCCACAAGGCAGTTACAAACAGGCAA
CGCTCGTTGCTTGTTCTTGACATACAAATTCTTGAAAAACAAACAGCGAATCGTCCTCAAGTACTAGCCCAAAAATTCGA
GACAACAAATCGTCACTGTTATTTCAATGCGCACATGATAT---------------------------------------
--------------------------------CTCGATGTAATAACATTAACGCCCCCATTAAGCTTCAATTCCAGCACT
AG--------------TAACAACAATTGAAGAAACGCCGCCCACTTTAAAAATGATCAAGAAACGCCACAACCGAAAAGT
TCCGCCGTCCCTCGTGCTTCCG---GACAACTGCTGCTGCCAAACATGGCAAGGGTCAAGAAGAAGGCCGCCGTAATATG
CTGCTGCGCGTTGCTCGCGGCGTCCCTCCTGCTCGGCGCCGCCCTCGCCACCGCGCTCTACTTCCTGCTGCTCCGCCCGC
ACCCGCCGCGCGTGGTGGCAACGGCGGTGGACACGCAGCTCGCCGCCTTCACCGTCCTCCCGCCGGGGCTCAACTTCTCC
CTGGCCGTCGACGTCACCGTGCACAACGAGGACGGT--------------------------------------------
--------------------------CGCCCGCGGGGAAGATTCCGGCGCGGTCGACGAGGACGGTCGGGGCGCGGGTGC
GGGTGGACGCGGCGAGGGTCATCCTAAGCGGGCACTACGTGGTGGACGTTGTCGCAGGCGCGCTGCCCTTCGAGGCCAAG
ACGGCGGTGGCGGGGAAGGCCGCGGCGCTCCGGCTGTTCAGGGTGAGCGCGAACGCCGAGGC
>chr2A_468
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-------------------------------------------------------------------CAAGATTTGAGGA
GTGTTTGTCGGGCAAAATTGCTAAACTTGCCGGATTCAAACTTATGACGAAACATATGTTCACTACCCTCAGGTAATATT
ATCTAACATGATGCAGTTACAGGAAAAGTTATGTACATGATGACAGTTGCGCAAGGGTTGCTCTCTTGGTTCG-------
-------TAGTTTCTCAGAAATCACACATGA----ATATATGTAACTTGTACGCTAAGCAAACCAAACCAGCCGTTTAGT
TTGAGGTATAACATGCGAGACGTACTTCTATACGTAC---ATCCTGCATTTTACCGTTCTCCCCATACCAGAGGCTGGGA
GATTTTCCAGACGCTCCCAAATCTGCAAAGAAACCAAACAAAACAACACGGATAACAATGCATGGGCACACCAAGCCGAA
CAGCCAGAAACAAAAACCATCTGTAATCCCAATGAAACTTCCCGTCCTACATATGGCCGCCTCATTTGCTGGTACTACGT
CCCATTGACATCCAAA-CCAAAGATATTCATCAAAGGCTTCAAGGAGCACGCACCAGCCGATTCGATAGGATGAAGAGGA
AGCCCGTGGTGATCTGCTGCAGCGTGCTGCTCGCCCTCATCCTCGTCCTCGCCATCGTCTTCGTCGCGCTCTACTTCACC
GTGTTCCGGCCGCGCCCGCCGCACGTGGTGGCGACGGTGGTGAGCACGACGTTTACTCAATTCGACGTGGCCTCCGCCCC
GCCCAAGGTCAACATGAGCTTGGGCGTGGACGTGACCGTGAAGAACCCCAACTACGCGGCGTTCCGTTACGGCGACGTGG
TGACGGAGCTGACGTACTACGGCTCGCCTGTGGGGCAGTCGGTGGTGCTCGCGGGGGAGGTCGGCGCGCGAACGACGCAG
ACCGTCGGCGGGACGGTGGTGTTGCAGGCGGACAAGGTGATGTTCACGCCCCAATTCATCCAGGAACTGGCTACCAAGCT
GTTCGACCTGCCGGATTTCATGCTGCCGTTCCAGACGAGGACGACGGTGGCCGGGAAGGCCGTGGTGCTGGGGACGCTCA
AAATGAGGGCCAGCTCGACGGTGACTTGCAGCATCACCACCTACCCTCTCAAGCAGGAGACCATCTCCGACTGCACGTCC
ACGGTTAATGTCGGTTAACTATTTTTACCTGTGCGTGCGAGGAGCCCACACGGC----GTGTCTATCAAGAAGTGTGGGA
GTGAGTACCTTTTTTCGGTGAGTTTACAAGCTTTTCTCTTAGATTAGAGGGTTTTGTAT-------AAATAATTAATACA
GTA-TATGCTATACGTAA-------TTAAGCGCACTCATACAATTAGTATCTCGCCGCGTGTGACAATGTTTCCGAATTT
GTGCAGCCTGAGAATGCA----GAGAAAAATAAGAGATGATGTTCTTGACAAAATCCACATTGCACTT------------
--------------------------------------ACAAACAGCGAATCGTTCTCAAATACTAGCG--CAAATTCGA
GACATCAAATCATCAGCCATGATGTTTGATGAATACTCCTAGATAGGAAGATTTTTTTTCCAGCAAAAAAGAATGCAACA
ATGTTCATTGTTGTGAACTACGGGCACATGAGCTCGATGTAATAACA------CCCCCACTAAGCTTCAATTCTAGCACT
AACAGGCCAGCACTAATAACAACGATTGAAGAAACGCCACCCACTTTAAAAATGATCAAGAAACGCCACAACCGAAAAGT
TCCGCCGTCCCTCGTGCTTCTTCCAGACAACTGCTGCAGCCAAACATGGCAAGGATCAAGAAGAAGGCCGCCGTGATATG
CTGCTGCGCGTTGCTCGCGGCGTCCCTCCTGCTCGGCGCCGCCCTCGCCACCTCGCTCTACTTCCTGCTGCTCCGCCCGC
ACCCGCCGCGCGTGGTGGCAACGGCGGTGGAGACGCAGCTCGCCGCCTTCACCATCCTCCCGCCGGCGCTCAACTTCTCC
CTGGCCGTCGCCGTCACCGTGCACAACCCGAGCCACGCGCCGTTCCGGTACGGCGCGGTGGTCACCGCGGTGACGTACCA
CGGCGCGGCGGTGGGGCGGTCTGTCGCGCCCGCGGGGAAGATCCCGGCGCGGTCGGCGAGGACGGTCGGGGCGCGGGTGC
GGGTGGACGCGGCGAGGGTCACCCTGAGCAGGCACTACGTGGTGGACGTTGTCGCAGGCGCGCTGCCCTTCGAGGCCAAG
ACGGCGATGGCGGGGAAGGCCGCGGCGCTCCGGCTGTTCAGGGTGAGCGCGGACGCCGAGGC
>chr2D_529
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------------------------------------------------GAAACATATGTTCACTACCCTCAGGTAATATT
ATCTAACATTATGCAATTACTGGAAAAGTTATGTACATGATGACAGTTGCGCAAGGATTGCTCTCTTGGTTTTTAGTTTC
ATTATTTTAGTTTCCCAGAAATCACACATGTACGTATATATGTAACTTGTAAGCTAAGCAAACCAAACCAGCCGTTAAGT
TTGAGGTATAACATGCGAGACGTACTTCTATACGTAC---ATCCTCTAGTTTACCGTTCTCCCCAGACCAGAGGCTGGGA
GATTTTCCAGACGCACCCAAACCTGCAAAGAAACCAAACAAAACAACACGGATAACAATGCATGCGCACACCAAGCCGAA
CAGCCAGAAACAAAATCCATCTGTAATCCCAATGAAACTCCCCGTCCTACATATGGCCGTCTCATTTGCTCGTACTACGT
CCCATTGACATCCAAACCCAAAGATATTCATCAAAGGCTTCAACAAGCGCGCACCAGCCGATTCGATAGGATGAAGAGGA
AGCCCGTCGTGATCTGCTGCAGCGTGCTGCTCGCCCTCATCCTCGTCCTCGCCATCGTCTTCGTCGCGCTCTACTTCACC
GTGTTCCGGCCGCGCGCGCCGCACGTGGTGGCGACGGTGGTGAGCTCGACGTTCACTCAATTCGAAGTAACCTCCTTCCC
GCCAAAGGTCAACATGAGCTTGGGCGTGGACGTGACCGTGAAGAACCCCAACTACGCGGCGTTCCGTTACGGCGACGTGG
TGACGGAGCTGACGTACTACGGCTCGCCCGTGGGGCAGTCGGTGGTGCTCGCGGGGGAGGTGGGCGCGCGAACCACACAG
ACGGTCGGCGGGACGGTGGTGGTACAGGCGGACAAGGTGGTGTTCACGCCCCAATTCGTCCAGGAACTGGCTTCCAAGTT
GCTCGACCTGCCGGATTTCATGCTGCCGTTCCAGACGAGGACGACGGTGGCCGGGAAGGCCGTGGTGCTGGGGACGTTCA
AAATCAGGGCCAGCTCGGCGGTGACTTGCAGCATCACCACCTACCCTCTCAAGCAGGAGACCATCTCCGACTGCACGTCC
ACGGTTAATGTCGGTTAACTATTTTTACCTGTGCGTGCGAGGAGCCCACACGGG----GTGTCAATCAAGAACTGTGGGA
GTGAGTAACTTTTTTCGGTGAGCTTGCAAGCTTTTCTCTTGGAATAGAGGGTTTTGTATTTGTATAAAATAAATAAT--A
GTA-TATGCTACGTAGTCAACATTTCTAAGTGCACTCATACAATCAGTATTTCCCCGCGTGTGCCAATGTTTCCGAATTT
GTGCAGCCTGAGAATGCATACAGAGAAAAATAAGAGATG---TTCTTCACAAGATCCACAAGGCCGTTACAACCAGGCAA
CCCACGTTGCTTGTTCTTGAAATACAAATTCTTGAAAAACAAACAGCGAATCATTCTCAAATACTACCCCACAAATTCGA
GAAAACGAATTGTCACTGTTATTTCAATGCGCACGGC-------------------------------------------
-----------------------------------------------------------CTAAGCTTCAATTCCAGCACT
AG--------------TAACAACAATTGAAGAAACGCCACCCACTTTAAAAATGATCAAGAAACGCCACAACCGAGAAGT
TCCGCCGTCCCTCGTGTTTCTTCCAGACAACTGCTGCTGCCAAACATGGCAAGGATCAAGAAGAAGGCCGCCGTGATATG
CTGCTGCGCGTTGCTCGCGGCGTCCCTCCTGCTCGGCGCCGCCCTCGCCACCGCGCTCTACTTCCTGCTGCTCCGCCCGC
ACCCGCCGCGTGTGGTGGCAACGGCGGTGGACACGCAGCTCGCCGCCTTCACCGTCCTCCCGCCGGCGCTCAACTTCTCC
CTGGCCGTCGACGTCACCGTGCACAACCCAAGCCACGCGCCGTTCCGGTACGGCGAGGTGGTCACGGCGGTGACGTACCG
CGGCGCGGCGGTGGGGCGGTCCGCCGCGCCCGCGGGGAAGATCCCGGCGCGGTCGACGAGGACGGTCGGGGCGCGGGTGC
GGGTTGACGCGGCGAGGGTCATCCTGAGCAGGCACTACATGGTGGACATTGTGGCAGGCGCGCTGCCCTTCGAGGCCAAG
ACGGCGGTGGCGGGGAAGGCCGCGGCGCTCCGGCTGTTCAGGGTGAGCGCGGACGCCGAGGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
----------------------------------------S-----S---------------------------------
------------------------------------------------------------------S-------------
--------------------------------SSSS--S------------S----------------------------
----------S--------------------------SSS-----S--------------S------------S------
-----------------------------SS------------------------------------------------S
----------------S----------------------------------------------S---S------------
------------S-------S---S---------------S---------------------------------------
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----------------------------------------S---------------------------------------
-----------------S---S----------------S-----------------------------------------
------------------------------------------------------------------------------S-
---------------------------------------------------------------S----------------
------------------------------------------------------SSSS----------------------
------S-----------------------------------S-------------------------------------
---S---------------------------------------------------------S------------------
-------------------S----------------------------------------------------S-------
-S-S----------------S---------------------------------S-----S----------S--------
-----------------------------------SSSSSS---------------------------------------
-----------------------------------------------SSSSSS------S--------------------
--------------------------------------S-----------------------------------------
--------------------SS--------------------------------S-------------------S-----
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------------------------------------------------------------------S-------------
---------------------------SS-SS-SSS--------------------------------------------
------------------------------------------S-------------------------------------
-------------------------S---S--------------------------------------------------
---------------------------------------------------S----------
>forward_141
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-----------------------------------------CAAACAGGCATCGCACCAAA-------------------
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>reverse_2130
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-------------------------------------------------AACGCCCCCATTAAGCTTCA-----------
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