>input_sequence_74995
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--------------------------------------------ATGCATTTTGCAGGGCATACATCCGAGGGTACCTAT
AATTTCACATCCATTGGACAACCATCACAAATTGGTGAAGGCTTTGAAGATGAAAGAGAGGTCGAGGAAGTAAAAGAAAC
CGATGACTTGGAGATGATGAATCAATTGCAAAGTGATGATGACGACTTGCAAATTCTGGATCAAATGGATGCTGCTCATA
GGAAGGAGGATGTCGATCCAATCGAAGAAGGGGGTCGTACCATGGCTGGTTCAGGAAAGATGCCCCAAAAGAAGCCCAAG
AAGAAGAAGCCCAAGAACAGTGGAGATGTGATTGCTGGAGCATTAGAGAAGTACATAGAGCTGAAGAAAAGGCAAGTAGA
TGATGAAGCTACATACTTGGACAATGAAAGGGCAGAGGCAACAAAATTAGATGACTTGTCTATCACCAAATGCATGGATG
TGCTCAAAACAATGGAGGATGTCACCCGCGCAGAGAAGATCAAGGTGTTCAATGTCTTCAAGGATGCTGCAAACCGTGAA
ATTTTCATAAATGCCGCTGATGATGATAAAGAGACCACTGTTATGTGGCTCCGGAGTCAAATGTTCCCATGA--------
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>chr2A_1_TraesCS2A01G180700
AATGGCGATGATAACTACCAAGGGAACAACACCCAAGGCAACGCTTTGAGAGATGAAATTGCAATGCAAATGTGGAATGA
TTTCCAGCATAACTAACTCTTTGTAAGTTTGTGGATGTGATTGAATCTTTCTAATTCAACCGATTAATTGTC-TTATTTT
GTGTGTTAATTTGTTTTATCTAAACAGATATGTATGCAAAAGGATCTCCCAAATTCAACTTGGCGCAAGCTGCTGCCATA
CTAAAAAAGAAAGGTGTTCTTGGTGCTAAAAAGGATTCACCAAAGGTTACCAAAAGGAGTTCACCAAAAAGGTATTCTTG
TTTCTCATCTTCGACTTGTTTTTCACTATAAGAACAGTAGCATTGTTGTACTAGCATGTTTCATGTCACAAGTATTTTCA
TGCATGTAGCCATTTGATCTGAATCTGAATTTGTCAAACACCATTCTTAGCCTTGTACTTTAATTGGCTTGTGTAGTTGT
GAAATAAAGAGCACAATGGAGTTTAGGACTTGAAAAAGGTTTGGTGGAGATACTTCAGGAGCACGATACTCCTTACCACC
AAGGACAAAATGGATGGAGCAAGGAAACTTGGAACTTGATGGTGACAAAATTCCATGCCAAACATAAACAAGCGAAGTTC
TCGAAGCT---------------TCAAATTCAAGATAAGGAGAAGGATCTCAAAAGGGAATACAGGATGCTAAAAGAAGC
TCGAAAGCAAAGCGGT-------------------------GTTGGCTGGGAAGACAAAAGATGCATGATAGAAGCCGAC
A-------------------------------------------------------------------------------
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-------------------------------------------CCGACCTTTGGGACAATCTGCTTATTGTAAGTTATTT
AATTCCACCTTTTGATATGGCTACAATTTGTACCATGTTAATACTAATATATTATTCTGGTTCTTTATAGTCATATCCAA
ATATTGGGAAATTCTAG-AAGAAATCTTTTCCTCACTTTGACTTGCTAGGAGAACTGTACGACGGTAAGTTTACCAACTT
CTGTTGCTACCTCTCACTTGGTTGCCTCTTGCTTGGTTACTTACATGCATTTTGCAGGGCATACATCCGAGGGTACCTAT
AATTTCACATCCATTGGACAACCATCACAAATTGGTGAAGGCTTTGAAGATGAAAGAGAGGTCGAGGAAGTAAAAGAAAC
CGATGACTTGGAGATGATGAATCAATTGCAAAGTGATGATGACGACTTGCAAATTCTGGATCAAATGGATGCTGCTCATA
GGAAGGAGGATGTCGATCCAATCGAAGAAGGGGGTCGTACCATGGCTGGTTCAGGAAAGATGCCCCAAAAGAAGCCCAAG
AAGAAGAAGCCCAAGAACAGTGGAGATGTGATTGCTGGAGCATTAGAGAAGTACATAGAGCTGAAGAAAAGGCAAGTAGA
TGATGAAGCTACATACTTGGACAATGAAAGGGCAGAGGCAACAAAATTAGATGACTTGTCTATCACCAAATGCATGGATG
TGCTCAAAACAATGGAGGATGTCACCCGCGCAGAGAAGATCAAGGTGTTCAATGTCTTCAAGGATGCTGCAAACCGTGAA
ATTTTCATAAATGCCGCTGATGATGATAAAGAGACCACTGTTATGTGGCTCCGGAGTCAAATGTTCCCATGAGGTATGTT
CAAGATTTGAGCTCTTAGTTGTTCCCACTTTGGTTGAGTTAGTTGGTAAGCTAGAGTTCAATTTGATATCTCGTTGCAAC
TTGAAGCACTGCAAAGTAGAACTAAATAATGCTTCTGCCCCTTTTTCTCAGAAACTTCTCTGGAATATATCTCGGATAGT
TGAC----------------------------------------------------------------------------
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--------------------CGATCTTCGCATG-----------------------------------------------
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-------------------------------------------------------------------------TACACTG
AAGTTCCTATGGTCCATAACACTTGTAGTAGTATTTTTTTCCTCTTTTTTCATGTGGGCTCAAGATCGTTGCTTTTTTGT
AGAGTTATTTTGAGTCTTGGCTGCCACCTCCAAGAACCAGATAGTAGGAAAGGAAAGAGCTGCCACCCAC-AGAAGCTAG
TTGTGTTGGAATTATTTAAGGACCTGCTACTCTGTTCATGAAGTGTGCAATTCCTAATATATTTGCACTATTTTGTAATA
TTCGTATTCTTCATTATTGTCCATTTGATAGCAAGATGCTAGTTGTGATGGATTGTGTATGGGTTTTAGCAAGTTTTTCT
TGCTATGATACTGTTTAAGCTATAAAAGTTGAATTTTGTTTTGCACCATCTTATCCCAGCCAACGGATGCAAAAATATTA
GATTTTTAATTTTCATCATCTTATCAGGA---------------------------------------------------
--------TGTTTTTACTGCTCTGCCAGCCAGTGTTGTACCAAACATAGGGAATTATGGGGGTGGGAATTATTGGGGAAT
TGAGGGGATTTGGTGGAGGGGAGGGGATCACCAAATCCCCTCTAATCCCCTAGCCCAT---GGGGGGTGTAAAAACACAA
GTGCCGAACAAGGCCTAAGAGAAATGATGGACAGAAAGATTAAGGACGCTGATAACGCCCACACGTGTGATGAGAGCAAC
ATCCGTCCACACGTCCTATACACACATATTGTGCCATGTCACCGCATGCATGCGTGTGAGAATCTTTTTGGATTTCCAGT
TTTTAAAATGTTTTATCGCTTAAATGAAAAATCTGATTGAATATCTGTTTTTACCATTAAATCCATCGCGG
>chr3A_1
AATGGCAATGATAACTACCAAGGGAACAACACCCAAGGCAACGCTTTGAGAGATGAAATTGCAATGCAAAAGTGGAATCA
TTTCTAGCATAACTAACTCTTTTTAAGTTTGTGGATGTGATTGACTCTTTCTAATTCAACCGATTAATTGTCTTTATTTT
GTGTGTTAATTTGTTTTATCTAAACAGATATGTATGCAAAAGGATCTCCCAAATTCAACTTGGTGCAAGTTGCTGCCATA
CTAAAAAAGAAAGGTGTTCTTGGTGCTAAAAAGGATTCACCAAAGGTTACCAAAAGGAGTTCACCAAAA-GGTATTCTTG
TTTCTCATCTTCGACTTGTTTTTCACTACAAGAACAGTAGCATTGTTGTACTAGCATGTTTCATGTCACAAGTATTTTCA
TGCATGTAGCCATTTGATCTGAATCTGAATTTGTCAAACACCATTCTTAGCCTTGTACTTTAATTGGCTTGTGTAGTTGT
GAAACAAAGAGCACAATGGAGTTTAGGACTTGAAAAATGTTTGGTGGAGATACTTCAGGAGCACGATACTCCTTACCACC
GAGGACAAAATGGATGGAGCAAGGAAACTTGGAACTTGATGGTGACAAAATTCCATGCCAAACATAAACAAGCGAAGTTC
TCGAAGCT---------------TCAAATTCAGGATAAGGAGAAGGAGCTCAAAAGGGAATATAGGATGCTAAAAGAAGC
TCAAAAGCAAAGCGGTGTTGGCTGGGACAAAGCAAAGCAGTGTTGGCTGGGACGACAAAAGATGCATGATAGAAGCCGAC
ACTGATTATACGTCTCCAACGTATCTATAATTTTTTATTGTTCCGTGCTATTATATTATCTCTTTTGGATGTTTATGGGC
CTTATTAAACACTTTTATATTATTTTTGGGACTAACCTATTAACCCAGAGCCCAGTGCCAGTTTCTGTTTTTTCCTTGTT
TCAGTGTTTCGCAGAAAAGGAATATCAAACGGAGTCCAAACGGAATGAAACCTTCGGGAGAGTTATTTTTGGAACGGAAG
CAACCCAGAAGACTTGGGGTGTACGTAAGGGAAGCAACGAGGAAGGCACGAGGCAGGGGGCGCGCCCTCCACCCTCGTGG
CTCCCCTGACGTATTTCTTCCTCCTATATATATACCCATATACCCTAAAAACTTCGAGGAGCACAATAGATCAGGAGTTC
TGCCGCTAGAAGCCTTCGTAGCCACCGAAAACCAATCTAGACCCGTTCCGACACCTTGTTGGAGGGGGAATCCTTCTCCG
GGGGCCATCTTCATCATCCCGATGCTCTCCATGACGAGGAGGGAGTAGTTCTCCCTCGGGGCTGAGGGTATGTACCAGTA
GCTATGTGTTTGATCTCTCTCTGTCTCTCGTGTTCTTAAGGTGTTATGATCTTGATGTATCGCGAGCTTTGCTATTATAT
TTGGATCCTATGATGTTTCTCCCCCTCTACTCTCTTGTAATGGATTGAGTTTTCCCTTTGAAGTTATCTTATCGGATTGA
GTTTTTAAGGATTTGAGAACACTTGATGTATGTCTTGCGTGGGATAACCATGGTGACAATGGGTTATTCTATTAATCCAC
ATGATGTATGTTTTAGTGATCAACTTGCGGGTTTCGCCCATGAACCTATGCATAGGGGTTGACACACGTTTTCGTCTTGA
CTCTTCGGTAGAATCTTTGGGGCACTCTTTGAGGTTCTATGTGTTGGTTGAATAGATGAATCTGAGATTGTGTGACGCAT
ATCGTATAATCATACCCACGGATACTTGAGGTGACATTGGAGTATCTAGATGACATTAGGGTTTTGGTTGATTTGTGTCT
TAAGGTGTTATTTTAGTACGAACTCTAGGGTTGTTCGTGACACTTATAGGAATAGTCCAACGGATTGATTGGAAAGAATA
ACTTTGAGGTGGTTTCGTACCCTACCATAATCTCTTCGTTTGTTCTCCGCTATTAGTGACTTTGGAGTGACTCTTTGTTG
CATGTTGAGGGATAGTTATGTGATCCAATTATGTTATTATTGTTGAGGGAACTTGCACTAGTGAAAGTATGAACCCTAGG
CCTTGTTTCAACGCATCTCAATACCGTTTACGCTCACTTTTATCATTAGTTACCTTGCTGTTTTTATATTTTCAGATTAC
AAGAACCTTTATCTACCATCCATATACCACTTGTATCACCATCTCTTCGCCAAACTAGTGCACCTATACAATTTACCATT
GTATTGGGTGTGTTGGGGACACAAGAGACTCTTTGTTATTTGGTTGCAGGGTTGCTTGAGAGAGACCATCTTCATCCTAC
GCCTCCTATGGATTGATAAACCTTAGGTCATCCACTACAGGGAAATTTGCTACTGTCCTACAAACCTCTGCACTTGGAGG
CCCAACAACGTCTACAAGAAGAAGGTTGTCTGGTAGACATCAACCGACCTTTGGGACAATCTGCTTATTGTAAGTTATTT
AATTCCACCTTTTGATATGGCTACAATTTGTACCATGTTAATACTCATCTATTACTCTGGTTCTTTGTAGTCATATCCAA
ATATTGGGAAATTCGCAAAAGAAATCTTTTCCTCACTTTGACTTGCTAGGAGAACTGTACAATGGTAAGTTTACCAACTT
CTGTTGCTACCTCTCACTCGGTTGCCTCTTGCTTGGTTACTTACATGCATTTTGCAGGGCATACAGCCGAGGGTACCTAT
AATTTCACATCCATTGGAAAACCATGACAAATTGGTGAAGGCTTTGAAGATGAAAGAGAGGTCGAGGAAGTAAAAGAAAC
CGATGACTTGGAGATGATGAATCAATTGCAAAATGATGATGACGAATTGCAAATTCTAGATCAAATGGATGCTGCTCATA
GGAAGGAGGATGTCGATCCAATCGAAGAAGGGGGTCGTACCATGGCTGGTTCAGGAAAGATGCCCCAAAAGAAGCCCAAG
AAGGAGAAGCCCAAGAACAGTGGAGATGTGATTGCCGGAGCATTGGAGAAGTACATAGAGCTGAAGAAAAGGCAAGTAGA
TGATGAAGCTGCATACTTGGCCAATGAAAGGGCAGAGGCAACAAAATTAGACGACTTCTCTATCACCAAGTGCATGGATG
TGCTCAAAACAATGGAGGTTGTCACCCGCACAGAGAATATCAAGGCGTTCAATGTCTTCAAGGATGCTGCAAACCGTGAA
ATTTTCATAAATGCCGCTGATGATGATAAAGAGAACGCTATTATGTGGCTCCGGAGTCAAATGTTCCCATGAGGTATGTT
CAAGATTTGAGCTCTTAGTTGTTCCCACTTTGGTTGAGTTAGTTGGTAAGCTAGTGTTCAATTTGATATCTTGTTGCAAC
TTCAAGCACTGCAAAGTAGAACTAAATAATGCTTCTGCCCCTTTTTCTCAGAAACTTCTCTGGAATATATCTCACATAGT
TGAC----------------------------------------------------------------------------
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--------------------TGATCTTTGCATG-----------------------------------------------
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-------------------------------------------------------------------------TACACTG
AAGTTCCTATGGTCCATAACACTTGTAGTAGTATTTGTTGCCTCTTTTTTCATGTGGGCTCAAGATCGTTGCTTTTTTGC
AGAGTTATTTTGAGTCTTGTCTGCCACCTCCAAGAACCAGATAGTAGGAAAGGAAAGAGCTGCCACCC-C-AGAAGCTAG
TTGTGATGGAATTATTTAAGGACCTGCTATTCTGTTCATGAATTGTGCAATTCCTGATATATTTGCACTATTTTGTAATA
TTTGTATTCCTCATTATTGTCCATTTGATAGCAAGATGCTAGTTGTGATGGATTGTGTATGGGTTTTAGCAAGTTTTTCT
TGCTATG------TTTAAGCTATAAAAGTTGGATTTTATTTTGCACCATCTTATCCCAGCCAACGGATGCAAAAAGATTA
GATTTTTAATTTTCATCATCTTATCAGGA---------------------------------------------------
--------TGTT------------------------GTACCAAACGCAGAGAATTATGGGGGTGGGGATTATTGGGGAAT
TAAGGGGATTTGGTGGAGGGGAGGGGATCACCAAATCCCCTCTAATCCCCTAGCCCGTGGGGGGGGGTGTAAAAGCACCA
GTGCCGAACAAGGCCTTAAGA-----------------------------------------------------------
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>chr4B_455
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-------------------------------------------------------TACTTTAATTGGCTTGTGTAGTTAT
GAAACAAAGAGCACAATGGAGTTTAGGACTTGAAAAAGGATTGGTGGAGATACTTCAGGAGCACGATACTCCTTACCACC
AAGGACAAAATTGATGGAGCAAGGAAACTTGAAACTTGATGGTGATAAAATTCCATGCCAAACACAAACATGCGAAGTTC
TCGAAGCTTCAAATTCAAGACAATCAAATTCAAGACAAGGAGAAGGAGCTCAAAAGGGAATACAAGATGCTAAAAGAAGC
TCGAAAGCAAAGCGGTGTC-------------------------GGCTGGGACGACAAAAGATGCATGATAGAAGCCGAC
ACTGACCTTT----------------------------------------------------------------------
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-------------------------------------------------------------TTTGATATCTCGTTGCAAC
TTGAAGCACTGCAAAGTATAACTAAATAATGCTTCTGCCCCTTTTTCTCAGAAACTTCTCTGGAATATATCTCAGATAAT
TGTTTCTTTCACATCCAGAGAAATTAAATATGTAATATGTAATATGCATCCATATGACATATATTTTTTGATGATTATAA
ACTTGTATCTAGTCATCCATATGTAATATCTTAGATAATTGTTTGTTTCTAGATGACTTTCTGATATTTTTTATGTGTTG
GAACTTATGAAATCTATTTTTGATCTTTGAATTCTCTCTTTTATATGTAATATGTGCTGGAACATGCTATTTCTTTCAGC
AAATCGACAACATATTGAACTTCAGTGTTATGTTCCTGTTTCCTTATCACTATGTATTATCTTTGCCACTTCCGTGGAAA
TTTTGTACTAGTCCCGTGTAGGAGAAATAATAATCAAATATGCTACTGTACATCACAAGCACTCGAGTTTACCTTCTCAT
ATGTGATGAATAATCATGCCTTTTAGTTGTGGAAACATATTTTTAATTTCTGTATGGTCAACTGGTCTCTGAAACTATCT
GGTTCTTGAAGATGACTGACAAGTACCGCATATATCACTATAGTGTCCTTATTGTTTTTGTGCTACCACATACCATTATA
ACCACCTAAATGTTTCTGGTTGCTAATTGTACTGTCCACCTCTACATTATGCATATGTGCCGGTCTTCACATATACACTG
AAGTTCCTATGGTCCATAAAACTTGTAGTAGTA-TTTTTGCCTTTTTTTTCATGTGGGCTCAAGATCATTGCTTTCTTGG
AGAGTTATTTTGAGTCTTGGCTCCCACCTTCAAGAACCAGATAGTAGCAAAGGAAAGAGCTGCCACCC-CCAGAAGCTAG
TTGTGATGAAATTATTTAAGGACCTACTACTCTGTTTATGAAGTGTGCAATTTCCGATATATTTGCACTATTTTATAATA
TCCATATTCTTCATTATTGTTCATTTGATAGCAAGATGCTAGTTGTGATGGATTGTGTATGGGTTTTAGCAAGTTTTTCT
TACTATGATGTTGTCTAAGTTG-------------------------------------------------AAAAGATTG
GATTTTTATTTTGCACCATCTGTTATGCTGCTGCTGGTTCGCATCTATTATTGCTTCAGAATGTTGTTGCTACTCTGCCA
ACCACTAGTCTT------------------------GTACCAAACATAGGGAATTATAGGGGTGGGGATTATTGGGAAAT
TGAGGGGATTTGGTGATCCCCACCCCAACACCAAATCCTCTCTAATCCCCTAGCCCGTT----GGGGTGTAAAAACACCA
GTGCCGAACAAGGCCTTAGGAAA---------------------------------------------------------
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>SNPs
------S---------------------------------------------------------------S-------S-
----S-----------------S---------------------S-----------------------------------
---------------------------------------------------------------S-----S----------
---------------------------------------------------------------------S----------
----------------------------S---------------------------------------------------
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----S---------------------------------------------------------------------------
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-----------------------------------------------S--------------------------------
----------------------------------------------------S---------------------------
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---------------------------------------------S--S-----S-----------S-------------
--------------SSS-------------------------------------------S-S-----------------
------------------S----------------------------------------------S--------------
------------------S------S------------------------------------------------------
--------------------------------S------------S-----------S----------------------
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---S-------------------------------S--------S-----------------------------------
----------S---------S------------------------------S-----S-----------S----------
------------------S----------S-------S-------S----------------------------------
----------------------------------S-S--S----------------------------------------
------------------------------------------------------S-------------------------
-------------------------------------------------------------------------S------
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--------------------S------S----------------------------------------------------
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---------------------------------------S---------------------------------------S
--------------------------------------------------------------------S-----------
-----S-------------------------------------------------S------------------------
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---------SS--------------------S-----S-------------------------------------S----
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------------SSSSSSSSSSSSSSSSSSSSSSSS------------------------------S-------------
--------------------------------------------------------S---------------------S-
----------------S--SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_773
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---------------------------------AAAGCGGTGTTGGCTGGGAA---------------------------
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>reverse_4580
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-------------------CTCTGCCAGCCAGTGTTGTA-----------------------------------------
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