>input_sequence_74990
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---ATGGGTCGCCCTGATTCGGAGGCGCCGACGTCGAGCATC---GCCGCGGGGCTGGCTGCTCTCCAAGACCACGCCGA
AGGACACGGGGTAGGC------------GCGGCGGCGCCGACGAGTGCAGGCTCGGCCTTCGACACCAACGTGGTGATCA
TCCTTGCCGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCCTTAGCGCGGTGCGCGCTCCGGTACGTGGGG
CGCGGAGCCGCGGT---CGCAGCCGGCCAGGCCGGGACGACGGCGCGGGTGGCCTGCAGC---GGCAGCGGCATCAGGAG
GCGCGTGCTGAGGAGCCTCCCCGTGGAGGTGTACGGCTCCGGGGAGGACATCGACGACGTGTGCGCCATATGCCTCGGCG
AGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGCCACGGGTTCCACGTCCGGTGCGTCGACGCATGGCTG
GTGTCCCACAGCTCGTGTCCGACGTGCAGGCAGCCGGTGATCGAGGGCTCTCCCGCGAAGGGCGGCGACGGCGGCAGTGG
CGGTAGCCAGTGCCCCGCAGAG---------------AACGACACGATCACTGTGGTCATCGTGTGA-------------
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>chr1B_1_TraesCS1B01G310500
TTTTTTCCTTCTTAGAGGCATTGTTTTTGGAAAACCTCTTTCGTATTCTGGGTGTTGTCTTCGGTGGTGGTTAGAGCGCT
GCTGATGCTAGTGACTCATTACCGTGACGTGTCGTTTTCCTTCTGTTCTTTTTATTTATTTTTTGGTTGTGTGTATCCTT
AATGTTCTTGAACATCTGGTTGGAATAAAGACAGGATGAAATTAGTATCTTGGCGATATTCATATATTCATTTTGTCGAA
AAGAAGCGATGCAGTGTACTCCCTCCGTCTGGAAAATTTTGTCCCATGCTGGTTCCTCAAATGAATGTATCTACCACTAA
CTTGGTGCTAGATACATTCATTTGAGGGACAAGTTTTTTCGGACGGAGGGAGTACTAATTACCATCGTGTGAACATAAAA
AATAATCTGAAAAGCTTACGTTTTCCTCTAATCTTGTCTCAGTATGAAGTTTCGTGTAGGTGATTAGTCTGAAGCTAATG
ATTTTTGGCGGGTGTGTGCGCCGCGCGTGAGCCAACAGACGCTCTACGTGCAAGAAGGACGGCGCACACACCCGCCAAGA
CGGAAGCTTGCAAGTAGAGCGTCTGTTGGCTCACGCGCGGCGAGTTCGCCATCCATCCAAATATCTT-CTGCCCGCTTTG
CCTCCAGACCAGAGCGACCAAAAAGTGTTCGTGCGTCCGCACTAGCCCCTCG--CCCGCGCGTGTCCCTATCCCTGCAAC
AAACAACTCAGCTGCCTAGCTGCAGGG-TGCAACTTGGCTCGGCCGGGGAGCGCCT-TTTTACAGAGTACACTCACG--C
AACACCACCCCACAGAACA--------ATGGTGAGCACGGCGACCGCGCCCTCTTATATATACTCCCCGAACGGAGCAGA
GAGTTACAGACGAACACGAATAGCAGCTTGCTTAGCA---GCATCAATCGACTTCGAATAGTTTGAAACATCCAGCGTCG
CGTCTCGCGTGGACGTCTCTC--------------------TC-----TCTCTCTCTCTCTGATCAACTTCATCAACGGT
ACCATGGGTCGCCCTGATTCGGAGGCGCCGACGTCGAGCATC---GCCGCGGGGCTGGCTGCTCTCCAAGACCACGCCGA
AGGACACGGGGTAGGC------------GCGGCGGCGCCGACGAGTGCAGGCTCGGCCTTCGACACCAACGTGGTGATCA
TCCTTGCCGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCCTTAGCGCGGTGCGCGCTCCGGTACGTGGGG
CGCGGAGCCGCGGT---CGCAGCCGGCCAGGCCGGGACGACGGCGCGGGTGGCCTGCAGC---GGCAGCGGCATCAGGAG
GCGCGTGCTGAGGAGCCTCCCCGTGGAGGTGTACGGCTCCGGGGAGGACATCGACGACGTGTGCGCCATATGCCTCGGCG
AGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGCCACGGGTTCCACGTCCGGTGCGTCGACGCATGGCTG
GTGTCCCACAGCTCGTGTCCGACGTGCAGGCAGCCGGTGATCGAGGGCTCTCCCGCGAAGGGCGGCGACGGCGGCAGTGG
CGGTAGCCAGTGCCCCGCAGAG---------------AACGACACGATCACTGTGGTCATCGTGTGAGTTCATT----GT
GCAACGAAGCATTGCCATTACCGGTACCAGTTACCATGACAAGGGAGCACAGTTCTGCATGCGGAAGCTCTTGTAGAATC
ATCCAGCGACGGTTGCAATGCTTCTAAGATGTCAGGCGG----TAGCATGTAGCTCGTGGTCGCATCGAGTAT--GATCG
AACATTCGAACGGCTCATCGAGTGC-------------------------------------------------------
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-------------------GACCACCATTGCAGCCACCTCGCAAATCAACATATTTGCAACTACCTCATGGATCCACTCA
GCCCATGCCTTCACCTTGGTGTCCTCCATCATGGCCCCTATCAGTGGGATTAGGCCCCTGGTGAAGCCGCACTTCTAGAT
CTAGCAAGCACCCTCCCCACCAGGGAATCGCCATAAGGATCTTCAGACACCACCAAAGTCGAAACCACGCCTCCACACTC
TAGATCTTGACACACTGATGCCCTCACATTTCTAGAGGGCAAACATCTCCAGCGTGTCCTTCAGGTTGGGAAACGCCACA
CGCACCCCGCCCACGGGCTTCCTAGC--------------------------------------CGAGTTGGCAGAGGCG
ATAGCCAAGGTTGAGTGTCTCCTCTATGGCCGTGGCCATGAATACATTGGTGCGCTCTTACTCTTCATGCCGCTCTGCAC
TAGCCACCTACCTTGCCGCAACCAAAGCCATGTGGGGTCCTACCCTCACTTTGTGGCGACCACCGCCATAA--CTCCTCT
TGCTGAACCTCATCCCGGTTGCAGACGTCAT--TTCCTCTAAACCAATGGCTGGAGGCGGCACAATGGTGAGGCTACGCG
A-------------------------------------------------------------------------------
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---------------GCTGGTAGCTCTACTGCAGAGTTCAAGAATAATACTCCCTCCGCCCCATAATATAAGAACGTTTG
ACACTAGTGTAGTGTTGAAAACGTTCTATTTTGGGACAGAGGGAGTAATTGTTAAGAGCATGAGCCTTACTACACCACTG
AAACTAAGTCATTTTTTGTTGTATTAAAAGAACCCACAAGGTGAGAATGACGGGCGACGAAGGCACCCGGAAGACAAGAA
TGAAAAA
>chr1A_529
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------------------------------------------------TGCAAGAAGGACGGTGCACACACCCGCCAAGA
CGGAAGCTCGCAAGTAGAGCGGCTGTTCGTCCGCGCACGGCGAGTCCGCCATCCATCCAAATATCTTGCTGCCCGCTTTG
CCTCG-----AGAGCGACCAAAAGGTGTTCGTGCGTCCGCACTAGCCCCC-TCACCCGCGCGTGTCCCTATCCCTGCAAC
AAACAACTCAGCTGCCTAGCTGCAGGG-TGCAACTTGGCTCGGCCCGGGAGCGCCT-TTCTACAAAGTACACTCCCGCGC
AACACCACCCCACAGAACA--------ATGGCGGGCACGGCGACCGCGCCCTCTTATATATACTCCACGAACGGAGCAGA
GAGTGACAGACGAACACGAACAGCAGCTT----AGCACAGGCATCACTCGACTTCGAATAGTCTGAAACATCCAGCGTTG
GGTCTTGGGTGGACGCCTC-C--------------------TC-----TCTCTC-----------AACTTCATCAACAGT
ACCATGGGTCGCCTTGATTCGGAGGCGCCGACGTCGAGCATC---GCCGCGGGGCTAGCTGCTCTCCAAGACCACGCCGA
TGGACACGGGGGAGGC------------GCGGCGGCGCCGTCGGGTCCAGGCTCGGCCTTCGACACCAACGTGGTGATCA
TCCTCGCCGCGCTCTTCTTCGCTCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTACGTGGGG
ATTGGAACCGCGGT---CGCAGCCGGCCAGCCCGGGGCGACGGCGCGGGTGGCCTGCAGC---GGCGGCGGCATCAAGAG
GCGCGTGCTCAGGAGCCTCCCCGTGGAAGTGTACGGCTCCGGGGAGGACATCGACGACGTGTGCGCCATATGCCTCGGCG
AGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGCCACGGGTTCCACGTCCGGTGCGTCGACGCATGGCTG
GTGTCCCACAGCTCGTGTCCGACGTGCAGGCGGCCGGTGATCGACGGCTCTCCCGCGAAGGGCGACGACGGCGGCA----
-----GCCAGTGCCCCGCAGAG---------------AACAGCACGATCACTGTGGTCATCGTGTGAGTTTTA---TGGT
GCAACGAAGCATTGCCATTGCCGGTACCAGTTACCATGACAAAGGAGCACTGTTCTGTATGCGGAAGCTCTTGTAGAATC
ATCCGGCGATGGTTGCAATGCTTCTAAGATGTCAGGCGCGCGCTAGCATGTAGCTCGTGGTCGCATCGAGTATATGATCG
AACATTCGAAATGCTCAT--------------------------------------------------------------
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>chr1D_529
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------------------------------------------------TGCAAGAAGGACGGCGCACACACCCGCCAAGA
CGGAAGCTTGCTAGTAGAGCGCCTGTTCGCCCGCAGACGGCAAGTTCGCCG----TCCAAATATCTTGCTGCCCGCTTTG
CCTCCC-----GAGCGACCAAACGGTGTTCGTGCGTCCGCACTAGCCCCCTTCACCCGCGCGTGTCCCTATCCCTGCAAC
AAACAACTCAGCTGCCTAGCTGCAGGG-TGCAACTTGGCTTGGCCGGGGAGCGCCT-TTTTACAAAGTACACTCACG--G
AACACCACCCCACAAAACA--------ATGGCGGACGCAGCGACCGCGCCCTCTTATATATAATCCCCGAACAGAGCAGA
GAGTGACAGACGAACACGAATAGCAGCTTGCTTAGCACAGGCATCAATCGACTTAGAATAGTTTGAAACATCCAGCGTTG
GGTGGACCGACG----------------------------------------TCTCTCTCTGATTAATTTCATCAACAGT
AGCATGGGTCGTCCTGATTCGGAGGCGCCGACGTCGAGCATC---GCCGCGGGGCTGGCTGCTCTCCACGACCACGCCCA
CGGACACGGGGGAGGC------------GCGGGGGCGCCGACGAGTGCGGGCTCGGCCTTCGACACCAACGTGGTGATCA
TCCTTGCCGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTACGTGGGG
CGAGGAGCCGCGGT---CGCCGTCGGCCAGGCCGGGGCGACGGAGCGGGTGGCCTGCAGC---GGCAGCGGCATCAAGAG
GCGCGTGCTGAGGAGCCTCCCCGTGGAGGTGTACGGCTCCGGGGAGGACATCGACGACGTGTGCGCCATATGCCTCGGGG
AGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTCCGGTGCGTCGACGCATGGCTG
GTGTCTCACAGCGCGTGTCCGACGTGCAGGCGGCCGGTGATCATGGGCGCTCCCGCGAAGGGCGGCGACGGCGGCATTGG
CGGTAGCCAGTGCCCCGCAGAG---------------AACAACACGATCACAGTGGTCATCGTGTGAGTGCATC----GT
GCAACTAAGCATTGCCATTGCCGGTACCAGTTACCATGACAAGGGAGCACTGTTCTGCACGCGGAAGCTCTTGTAGAATC
ATCCGGCGAATGTTGCAGTGCTTCTAAGA---------------------------------------------------
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>chr1D_695
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---------------------------------------------------------GCGAGTGTGCCTATCCCTGCAGC
AG----CTCAGCTGCCTACCTGCAGGC-TGCAACTTAGCCCGGCAGCGC----CCT-TTTTACAAAGTACACTCGCG--C
AACACCACCCCCCACAACA--------ATGGTG-----------CGCGCTCTCTTATATATACTCCACGACCAAAGCAGA
GATTGACAGAC----ACGAATAGCAGC-T----CGCACAGGCATCAATCCAT------TAGCTTGAAACAGCGGCCGGAC
GAACTCATCTCTGATCGACATAGCTGGGTGGGTGGGCATAATC-----TCTCTCTCTCTCTCATTTACTTCATCA-----
ACCATGGGCCGTCCTGATTCGGAGGAGCCGACGTCGAGCC---TCGCCGCGCGGCTGGCTGCTCTCCACGACCACGCCCA
CGGACATGGGGGAGGA------------GCGGCGGCGCCGACGAGTGCAGGCTCGGCCTTCGACACCAACGTGGTGATCA
TCCTTGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTGCGGTACGTGGGG
CGCAGAGCCGCGGT---CGCCGCCGGCGAGGGCGGGGCGACAGCTCAGATGGCCTGCAGG---GGCAGCGGCATCAAGAG
GCGCGTGCTGAGGAGCCTCCCCGTGGAGGTGTACGGATCCGGGGAAGTCATCGACGACGTGTGCGCCATATGCCTCTGCG
AGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGCCACGGGTTCCACGTCCGGTGCGTCGACGCATGGCTG
GTGTCCCACAGCTCGTGCCCGACGTGCAGGCGGCCGGTGTCCACGGGCGCACCCCCGAAGGGCGGCGACGGCGGCATTGG
CCATAACCAGTGTCCCGCGGAG---------------ACCGACACGATCACCGTCGTCATCGTGTGAGTTCATG----GC
GCAACGAAGCAT-GCCATTGCCG-------GTACCACACCAAGGGAGCAGAATTCTGCATGCGCAAGCTCTTGTAGAATC
ATCCCGCGACGGTTTCAATGCT----------------------------------------------------------
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>chr1D_726
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--------CAGCAGCTCAGCTGCAGGC-TGCAACTTGGCAGGGGAGCGC----CCTTTTT--CAAAGTACGCACCCG--C
GCAAGCTCCCCA-AGAACG--------GTGGTGCGCACCGGGACCGCGCCCTCTTATATATACCCCACGACCAGAGCAGA
GCGTGACAGAC----ACGAGTAGCAGC-T----ACCACAGGCATCAATCCAGTTCCAATACCTTGAAACGGCGGCCGGGC
GAACTCATCTCTGATCGATCGAGC----TGGGCGGGCATCATCATC-ATCTCTCTCTCTCTGATCAACTTCTTTA-----
ACCATGGGTCGTCCTGATTCGGAGGCGCCGACGTCGAGCATCGCCGCCGCGGGGCTGGCTGCTCTCCGCGACCACGCCCA
CGGACACGACGGAGGC------------GCGGCACCGCCGGCGGCGCCAGACTCGCCCTTCGACACCAACGTGGTGATCA
TCCTCGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTACGTGGGC
CGCGGTGCCGCGGCAGCCGCCGCCGGCGAGGGCGGGGCGACGGCCCGGGGTGCCAGCCGTGGAGGCAGCGGCATCAAGAG
GCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGGTCCGGGGAGGTCATCGACGACGTGTGCGCCATCTGCCTCGGCG
AGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCACGGTGCGCGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTG
GTGTCCCATGGCTCCTGCCCCACCTGCCGGCAGCCGGTCATGGAGGGCGCGCCCGCCAAGGGCGGCAGCGGCGGCGCCG-
--------------CCCGAAGCCAACGGCCCGTGGGCACGGAAATGATCGCCGTGGTCATCGTGTGAGTTCATCCGTCGC
GCAACGAAAGCATGCCATTGCCTGCCGGACACAGCACAACAAGGTAGCACAGCTCTGCATGCCCAAGCCCTTG-------
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>chr1D_726
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--------CAGCAGCTCAGCTGCAGGTTTGCAACTTGGCCGGGGAGCGC----CCTTTTTTACAAAGTACACTCGCG--C
AACACCACCCTCCATAACA--------ATGGTG-----------CGCGCTCTCTTATATATACTCCACGACCAGAGCAGA
GAGTGACAGAC----ACGAATTGCAGC-TAGCTAGCACAGGCATCAATCCAGTTCGAATACCTTGAAACAGTGGCCGGGC
GGACTCATCTCTGATCGACCGAGC----CGGACGGACATCACA-----------TCTCTCTGATTAACTTCATCA-----
ACCATGGGTCGTCTTGATTCGGAGGCGCCGACGTCGAGCATCATCGCCGCGGGGCTGACTGCTCTCCACGACCACGCCCA
CGGACACGGGGGAGGC------------GCGGCGGCGCCGACGAGTGCAGGCTCGGCCTTCGACACCAACGTGGTGATCA
TCCTTGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTGCGGCACGTGGGC
CGCGGAGCCGCGGT---CGCCGCCGGCGAGGGCGGGGCGACGGCTCGGGCGGCCTTCAAC---GGCAGCGGCATCAAGAG
GCGCGTGCTGAGGAGCCTCCCCGTGGAAGTGTACGGATCCGGGGAGGTCATCGACGACGTGTGCGCCATATGCCTCGGCG
AGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGGAGTGCTGCCACGGGTTCCACGTCCGGTGCGTCGACGCATGGCTG
GTGTCCCACAGCTCGTGTCCGACGTGCAGGCGGCCGGTGATCGAGGACTCTCTCGCGAAGGGCGGCGAAGCCAATGCCG-
--------------CCGTAGAG---------------AACAACACGATCACAGTGGTCATCGTTTGAGTTTTA---TCGT
GCAACGAAGTATCGCCATTGCCGGTA--AGTTACCACGACAAGGG--------------------AGCTCTTGTAGAATC
ATCCGGCGATGGTTGCAATGCTTCTAAGATGTCAG----GCGCCAGCATGTAGCTCGTGGTCGCATCGAGTGTATGATCG
AACATTCGAACTGCTCATTTGCTCACTGTAAATATTTGACGGCGAAAACACCATATAACATTTTTCTTTTTGGAAAAGAG
GAGGATAACACCTCGTCTCCCCATCAAATATGCACACAGCCTTATATTATTGGTTATTTGTTAAACCTATATTATTGGGT
ATTTAAGTATGTGAAGCCTAGCACTGATGCGGAACGAATCGGCTTATATTAAAAGGGAAAACCTGAGGCCATCCAAAATC
ATCGCCCTCGCGATATGATCTCCACAATCCTACCATGAAAAATATGACATATGACTGAACAAGAAAAAAAAAACTACGAT
AATACTACATTCACGAGCAAGTTTGAACGGGCTTTCACGGGGTGGAGGACGTGCTGTAATCTAATTGCCCCCCCCCCCCA
TTCTAAGTGGCAGGACCCGTCCTAATTAACTAAATCACAGCCATCAACCTTCAATTAGCCCGCAAAACCCCGTGAAGTCC
CCGTGCGTGTAGCATTACTCAAAATACTATGCTACTCCTGGGCAAAGCCTTCAAGAAAATATTGGTGTACATGCGTCAAT
GTTGACAGGGTCAACCAAGGTCTAACATAGCTTGGCATCCTTGACTCCTCGCCGATGATTTGACGTCATGAAGACTTGGT
TAGAGATTGGCGGCTCAAGGCGATTAATGGTGGAGGTGGTTGCAGGAAAGCCATCGCCTCCTTGATGATGCTTGTCTCGT
GAGAAATTTGGAAGGAGCACAACGCAAGAATTTTTCAAAATGTCTCCGCACCGACCTCCATTGTTATCGCAAAAATCAAA
GAGGACCCATCTTTGGACTTTGGTGGGAGCGAAGTAGCTTAGTATTGTTATGTCGTGTCTAAAAGTAAATTACAATAATA
ATAATAATTCTAAATATAGGAAAGATAAAGAACTCTATTTGGTGATAGATAAACCACCTGTCTCTCTTTTTTTCTTTTGC
TTTCTCAGCAGATATTTCATAAAACGTCTAAACCTTCTTCTTAATCAATGAAAATGACAAGTCTTCTGCCTTGTTAAAAA
AAACGGTCTAACATGAGACTTTCATCACCGAAGTCAAGCTTCGAACCAACACCTTCAACAAGAACATGTCACTTGCCCGC
CAACAGTACCCAAAATAGTTAAAGGGGAGATCGCGGGTTTTCACCAGGAGTACATACATACTTGTCATCAAATTTGTCAT
TGGCGATAACCTATATTGTCTAGTGATGTTTCAGAAGTTGGATCTTCACACTGAGAGAGCCGAAACTGGCCATACCAGTG
GACAAGGACCTTTCCTCCTTACAGTCTATGATATACCTCATTCGATCCTGGTTGATAGGAAAGAGAGGGAGACTTGAACG
CAATGTGGTTTTCATATCTGACCACCATTGCAGCCACCTCGCGAATCACCATCATTCAAACTACCTCATGGATCCACTTA
GCCGATGCCTTCACCTTGGTGTCCTCCATCATGGCCCCTGTCGGCGGGATCAGGCCCTAGCA-AAGCCACACTTCTAGAT
CTAGCTAGCACCCCCCCAACCCGGGAATCACCATAAGGATTTTCACACACCACCAGAGTCGGAACCACGCCTCCACGCGC
TAGATCTTGCCACACCGATGACCTCACATTTCTAGAGGGCGAACATCTCCAGCGTGTCCTTGAGGTTGGGAAACATCGCG
CGCACTCCACCCATGGGCTTCCTAGGCGAAGACATTCCCAGGTGGGTGCAACGTCGGTCTTTGGCGAGTCGGCAGAGGCG
GTAGCTGAGGTTGAGTGTCTCCTCTATGGCCTTGGCCATGAATACATACGTGCACTCTTACTCTTCATGCCGCTCTGCAC
TACTCACCTACCTTGCCGCAACCAAAGCCATGTGGGATCCTACCCTCGCTTTTTGGCGACTGCCCCCATAACCCTCCTCT
TGCTGAACCTCCTCCCGGTGTTGCGGACCCCGCTTCCTCTGAACCAACGGCCGAAGGTGGCACAATGGCAAGGCTACGCG
A-------------------------------------------------------------------------------
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---------------GCTGGTATCTCTCCTACATGGTTTAAAAATAAT--------------------------------
----------------------------------------------A---------------------------------
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>chr1B_735
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-----------------AGCTGCAGGG-TGCAACTTGGCCGGGGAGCGC----CCTTTTT--CAAAGTACACACCCC--G
CGCAAGCCCCCA-AGAACGATGGTGGAGTGGTGCGCACCGGG-CCGCGCCCTCTTATATATACCCCACGACCAGAGCAGA
GTGTGACAGACAGACACGGATAGCAGCT-----ACCTCAGGCATCAATCCAGTTCCAATACCTTGAAACGGCGGCCGGGC
GAACTCATCTCTGATCGATCGAGC----TGGGCGGGCATCATCATCGATCTCCCTCTCTCTGATCAACTTCTTTA-----
ACCATGGGACGTCCTGACTCGGAGGCGCCGACGTCGAGCATCGCCGCCGCGGGGTTGTCTGCTCTCCACGACCACGCCCA
CGGACACGACGGAGGC------------GCGGCGCCGCCAGCAGCGCCAGACTCGCCCTTCGACACCAACGTGGTGATCA
TCCTCGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTACGTGGGC
CGCGGTGCCACGGCAGCCGCCACCGGCGAGGGCGGGGCGACGGCCCGGGGTGCCAGCCGCGGAGGCAACGGCATCAAAAG
GCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGGTCCGGGGAGGTCATCGACGACGTGTGCGCCATCTGCCTCGGCG
AGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCGCGCACGGGTTCCACGTCCGCTGCGTCGACGCCTGGCTG
GTGTCCCACGGCTCCTGCCCCACCTGCCGGCAGCCGGTGATCGAGGGCGCGCCCGCCAAGGGCGGCAGCGGCGGCC----
--GAAGCCAGCAGCCCACGGGC---------------AGCGAAATGATCGCCGTGGTCATCGTGTGAGTTCATC----GG
GCAACGAGACAT-GGCATTGCCAGCCGG-CACAGCACTGCAAGGCTGCATACTTCTGCATGCCCAAGCTCTTGT------
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>chr1A_964
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-----------------------------------------TC-----TCTCTC-CTCTCTGATTAACTTGATCA-----
ACCATGGGCCGTCCTGACTCGGAGGCGCCGACGTCGAGCATCGCCGCCGCGGGGCTGGCTGCTCTCCGCGACCACGCCCA
CGGAAAAGGCGATGCCGCGGCGCCGCCGGCGGCGC------------CGGACTCGCCCTTCGACACCAACGTGGTGATCA
TCCTCGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTACGTGGGC
CGCGGCT---------CCGCGGCCGGCGAGGGCGGGGCAACGGCGCGGGGTGCCGGCCGCGGAGGCAGCGGCATCAAGAG
GCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGGTCCGGGGAGGTGATCGACGACGTGTGCGCCATCTGCCTCGGCG
AGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCGCGCACGGGTTCCACGTCCGCTGCGTCGACGCCTGGCTC
GTGTCCCACGGCTCCTGCCCCACCTGCCGGCAGCCGGTCATCGAGGGCGCGCCCGCCAAGGGCGCCAGCGGCGGAGCTGC
CCAAAGCCAG---------------CGGCCCGCGAGCACGGAAATGATCGCCGTGGTCATCGTGTGACTTCATCCGTCGC
GCAACGAAAGCATGCCATTGCCTGCCGG-CGCAACACGAGAAAGCAGCACAGCTCTGCATGC------------------
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>chr1B_970
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----------------------------------------------------TCTCTCTCAGATTTACTTCATCA-----
ACCATGGGTCGTCCTGATTCGGAGGCGCCGACGTCGAGCATCGCCGC---GCGGCTGGCTGCTCTCCACGACCACGCCCA
CAGGCATGGGGGAGGC------------GCGGCGC------------CGGGCTCGCCCTTCGACGCCAACGTGGTGATCA
TCCTTGCCGCGCTCTTCTTCACGCTGCTCTTCGCCATCGGGCTCAACTCGTTGGCGCGGTGGGCGCTGCGGTACGTGGGG
CGCGGAGCCGCGGT---CGCCGCCGGCGAGGGCGGGGCGACGGCTCGGGTGGCCTGCAGC---GGCAGCGGCATCAAGAG
GCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGATCCGGGGAAGTCATCGACGACGTGTGCGCCATATGCCTCGGCG
AGTCCGCCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGACACGGGTTCCATGTCCGGTGCGTCGACGCATGGCTG
GTGTCTCACAGCTCGTGCCCGACGTGCAGGCGGCCGGTGACCACGGGCGCACCCCCCAAAGGCGGCGACGGCGGCATTGG
CCATCACCAGTGTCCGGCGGAG---------------ATCGACACGATCACCGTGGTCATCGTGTGAGTTCATC----GC
GCAACGAAGCAT-GCCATT-------------------------------------------------------------
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>chr1A_970
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----------------------------------------------------TCTCTCTCTCATTTACTTCATCA-----
ACCATGGGCCGTCCTGATTCGGAGGCGCCGACGTCGAGCATCGCCGC---GCGGCTGGCTGCTCTCCACGACCACGCCCA
CGGACACGGGGGAGGC------------GCGGCGGCGCCGTCGGGTGCAGGATCGGCCTTCGACGCCAACGTGGTGATCA
TCCTTGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTACGTGGGC
CGCGGGGCCACGGCAGCCGCCGCCGGCGAGGGCGGGGCCACGGCGCGGGGTGCCTGCCGCGGAGGCGGCGGCATCAAGAG
GCGCGTGATCAGGAGCCTCCCCGTGGAGGTGTACGGCTCCGGGGAAGTCATCGACGACGTGTGCGCCATATGCCTCGGCG
AGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCCCAGTGCGATCACGGGTTCCACGTCCGGTGCGTCGACGCATGGCTG
GTGTCCCACAGCTCGTGCCCGACGTGCAGGCGGCCGGTGACCACGGGCGCACCCCCGAAGGGCGGCGACGGCGGCATTGG
CCATAACCAGTGTCCCGCAGAG---------------ACGGACACGATCACCGTGCTCATCGTGTGAGTTCATA----GC
GCAACGAAGCAC-GCCATTGCCGGTACT-----GCACCACAAGGGAGTAGAATTCTGCATGCGCAAGCTCTTGTAGAATC
ATCCCGCGACGGTTTCAATGCT----------------------------------------------------------
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>chr1A_2105
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-----------------------------------------------------------------GAGTAGGCAGAGGCG
GTAGGCGAGATTGAGTGTCTCCTCCATGGTCTTGGACATGAATACATTGGTGCACCCTTACTCTTCATGCGGCTATGCAC
AAGCCACCTACCATGCCGCAACCAAAGCCATGTGGGGTCCTACCCTCGCTTTTCGGCGACTGCCACTATAA--CTCCTCT
TGTTGAACCTCCTCCCTGT----------------CCTCTGAACCAGCGGCTGGAGGTGGCACAATGGCGAGGCTACGCG
AGCTGCTAGCCAGTGGTGGAGCCAGGAATATTTTTTAGGTGTGGCAGAGTTTGTGAGGGGAGAAAACGTTCCTGCTTGCT
GCCTCTCTTGACGGTGATCGCTGCCATGCCCACCACGCTGACTAAATATCGCGTGGTTGCTCTGTAATCGCTGCCTCTGT
TGCATGCCTTAAGGGTTAGCCGACTAGGGGTCGGTCGGTCGGTAGTAGGGACAAATATCACAACAAGACATACATTGTCA
TGAGTTTGGAGGAGTAGCCGTTGCTCCTAGTTGTATATTGTAATACCTCAGACGATTTGAGTCCGATTAGATCTAGTTTC
TTCACCGGAGAGACGGAAAGTGGTGGGGCTCTGGGTTTCGCGGAGTTGGCACTGCTCATCACACAGCTAGAGACAAGCTT
GAGGGGCGGCTGCAAGGCGATTCCTGATCAACCGTGCTTGAACGAAACAGCTCGTGTATCTCCAATCAACTAGTACATTT
TTTTAGCATGTCCAATCAACTTTTTTTTGAGAGAGATCTTCATGTCCAATCAACTCGAGTACATGTGAATTGATTTGCAA
TTGACTGCCAATGGTGTCCTCGTTTAGAACATGGGCTTGTGGGTCATGGGCTTATGTGATGCAAGTCACCTATTGCTTAA
TTCTCTCCTTCAGCGGCAGTTAGGCCTCTAATGAGGCAGAAACACGTAGGTAACAACACAACTACCTGGCGAAATACATT
CGAGGCCATGAGTTGCCTGCCCCCTAAGAGTATTCATCCTCCAAATTGACGAAACTGACCAAAAATCCATTGACTCAGCT
CAAAGCTTCATACATACAGTATATATATGCAATACTTTTGCCAAATTTTAGGTATGGCGGCTGCCAAACCTCGCCATATA
GCTGGATCCGCCCCTGCTGCTAGCTCTCCTGCATGGTTCAAAAATAAT--------------------------------
----------------------------------------------AATTGTTAAGAGCATGAGCCTTACTACACCACTA
AAACTAAGTCATTTTTTGTCGTATCAAAAGAACTCACAAGGTGAGAGTGACAGGCGACGAAGGCACCCAGAAGACAAGAA
CGAAAAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
---------------------S-----S--S-S---S-------------------------------------------
-----SSSSS-------------S-------------------------SSS----------------------------
----------------------------------------------------------------S---------------
---------------------------------S----------------------------------------------
----S-------------------------------------------------------------------------S-
S--------------S---S---------------------------------------------------------S--
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S----------S--------------------------------------------------------------------
-------------------------------------------------S--S---------------------------
------------------------------------S---------------------------------------S---
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----------------------------------------------------------------------------S---
-------------------------------------------------------------------------S------
-------------------S------------------------------------------------------------
----S---------------------------------S-----------------------------------------
-----------S------SSSS-SS-------------------------------------------------------
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------------------------------------------S-----S---SS--SS--------------------S-
---S-----------------------------------S--S-S-----S------SS-SSS-----S-----------
-----S-------S---S---S-------S----------S----S---------S-----S--------------S-S-
---------S-----S----S-------------------S--------------------S------------SS-S-S
-----S--S----S-----------S-------------------------------------------S----------
S-----S------------------------S---------------------S--------------------------
-----------------------------------------------S----S-------SS--S---------------
-----------S-------SSSSSSSSS-SS---------S------S---------S----------S-----------
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---------------------------S-----SS------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------S
-------------------S----S--------S------------S----S----------------S-----------
S------
>forward_298
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--------------------------------------TTGTCCCATGCTGGTTCCTC----------------------
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>reverse_3742
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-------------------------------------------------------------ACCGCCATAACTCCTCTTG
C-------------------------------------------------------------------------------
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