>input_sequence_74973
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---------------------------------------------------------------------------ATGAT
GAGCGGCGGTGGCAGTGGCAGCGG------CAGCGGCGCGGGGCCGAGCAGCTCCAGCTTCGAGCGGCACGCGAAGCGGC
GGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGGTGCAGCACGGGCAGGGGGACGAGGAC
GCGCTGGCGGCGGGCGTGGTGCCGCCGGTGACGGTGGTCCTGGACGGGCGCTGCATCTGCCACCGCATCCAGCTCAGCTG
CCACACCGGGTACCGCAGCCTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGACGCGGCCGAGGGCGAC---GACGACG
GGCTCGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGAGGACGACCTCCTCCTCGCCGGCGAC
CTCAACTGGAAGTAATCATC---CACACTTGCCCAA----CGGTTTCACTTGTGCCATTGATTTCCTTACCGAATTCTCG
TGCCGTTGGTTTTTGCCCGTTGTTGC-CAGGGACTTCTGCCGTGTGGCCAAGAGGATCCGGATCATCCCGGCAAAGTCGA
CGACCCGAAGGATCAAGCAATGCGGAGGCGCGGTTAACTAG---------------------------------------
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>chr2B_1_TraesCS2B01G534500
ACCACGTACCATACGGGGGTAGTGGCCAGTGGCATGACACGGTGGGCGCCGTGCATAGCGGCGAGATGCATGGCAGCAGG
ACCGAGCGACCGCCGGAGGGTCAAACGCGGAGCAAGCCGATCGGCAACCGCGCGCCCTGGCTCTGCGTGTGTGGTCGTGT
GCCCCGTCGCTTCGCACGGATCGTGAGAACAAACTCCCGCGTCCGCCGCTCCCACTATTCAACCCTCGCGTGCACGCGCG
CG----CGGGCTCCGCTCCCCGGGCGGGCCAAC-------ACACGACCATCTATGCCCAGCAACAGCAAGAAGCTGTGGC
CGATCTGCGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCTGCAAGATAACGATGTGTGTATAT--------TTGTGTG
TACCCTCGCCGTTCTCCTTTTCTCACCTTGCAAGCAACCCCACTGGCACTTCGGCGATTTCATCAAGCTGTTAGGAGGAT
TTCCATGTCACCTCTTTCAGTGGGTTTCACTGTTTGCCCTAGACTGTCTAGAAGGCTTC-----TCCAAGTTGCATTTCC
TCATGCATGCATGGTACGTATCAGAGTTAATCACCACGTGTAGAATTATTGTT-TTTCAGAATGTGTGGCGTGAAATGCT
TGCACGAACTGTTCTAGAGGTTTGT-------TTAGTTAGGCATGGTGCTGGTGTTGTACAACGGTACAAGGCAGCCAGC
GCTGGTCGCACAAAGTCGTACGTGAAAGCGTTTTCATGTGTAGGAAATATTTCGGTGGATTATTAAATGGAGGAAGTTGC
AACCCTAGCCAGTAGCTA---GAGCTCAGTCTCAGTCCCATCATCCATCCGTCGCCGGCTTGGCCGCCTATAAATCCTCC
CGCACTTCGCCGCAAAAAAAACACAACTGACCATCCAGACCAGTCCGGGCTGGCCTCCTTCCTAAACCCCACACGCAACC
GCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACTAAGATCAGTCCCGTTCCGGCCATGAT
GAGCGGCGGTGGCAGTGGCAGCGG------CAGCGGCGCGGGGCCGAGCAGCTCCAGCTTCGAGCGGCACGCGAAGCGGC
GGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGGTGCAGCACGGGCAGGGGGACGAGGAC
GCGCTGGCGGCGGGCGTGGTGCCGCCGGTGACGGTGGTCCTGGACGGGCGCTGCATCTGCCACCGCATCCAGCTCAGCTG
CCACACCGGGTACCGCAGCCTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGACGCGGCCGAGGGCGAC---GACGACG
GGCTCGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGAGGACGACCTCCTCCTCGCCGGCGAC
CTCAACTGGAAGTAATCATC---CACACTTGCCCAA----CGGTTTCACTTGTGCCATTGATTTCCTTACCGAATTCTCG
TGCCGTTGGTTTTTGCCCGTTGTTGC-CAGGGACTTCTGCCGTGTGGCCAAGAGGATCCGGATCATCCCGGCAAAGTCGA
CGACCCGAAGGATCAAGCAATGCGGAGGCGCGGTTAACTAGCTAGCTAGTCAGCCCCGCCCGGTGAAGAACCACAGGTGT
AATTAAGCCATACCTCTGCAGCTCCACCCCACTCTCAGCTCAGCTCAGCTCAACTCCGGCGAAAAAAAAGATCAAGTCCG
GCCGGCCCGCTGTCGAGAACTCGACGTCTCCCTAAAATCAA-ATCGATCCAACCTTT---TTTCATTTTTCGCTGTATCA
AAAGTTCAATGTCGCATTGTCACAATGAAAAGAGAAAAGAGA--TCAATTTTCTGTTGGTGCGAGAGAGAAGAAAGCTAG
CTAGCATACGATCGATGCGTGTCGTGCGATGACCACCGGCTA-----CCAGTGTCGCTAACCGGAGCACTGTGCCGGCGT
CAAATCGTCGATCCGCCCCGGCCCACCCCCAGCACGCACGGCACGTCCCTCTCGACGTGACTCAGCGACCGCGCCCCCT-
----------CGCCGTGTGTTTTTATCGCGAAAGCTCAGGCCCGGGTTGCTCCCGGCGGTTGGGATCTCCCTTTTGAGCG
CCACGTCGTTGAAGGAGGAACAGTGATGCGGATGCGCGTAGCCGTCGGGT---ACGTTACGTGCGCCGAGGCGCGATCGG
ACGT----GGAGCTGGCGGTCGA----GACGGAATGTCGTGTGCCCGTGCGCGCGGTTCACCGCCGGATCGATGGATCGG
CACGTACGCCACTCGACGTGTGGGTGGGAAAGGGTACGCTGCGTACCA---------CGTCGGCGTCGCTCGTAATGAGC
GCTGCTGCCTGTTCAATTACTACGGCGGCGACG------ACGTCGACGTCGATCGTGGCCGGGCTGCCGGGAGTGTGATA
CAACGAAACGCGGACGCGCACGCGCACAGTTGATTGGAGACTTGACGACGGCCATGGATCGCAAAGGCAGCATGACTGTC
A-------TCCACACTCCACAGCATGGAAATTGGCAGACCAGACCACC-------CTGGCAACATTATTGTTTCCCGGTA
AAATGGGCGGAGATCGGTGGCGTGCGT----------GCCCTTGGATCGACGGTCATGTGGGGAATCATGTCT
>chr2D_1
ACCACGTACCATACGGGGGGTAGTGGTGTCATGGCACGGT-GTGGGCGCCGTGCATGGCGGCGAGATGCATGGCAGCAGG
ACCGAGCGACCGCCGGAGGGTCAAACGCCGAGCAAGCCGATCGGCAACCGCGCGCCCTGGCTCTGCGTGTGTGGTCGTGT
GCCCCGTCGCTTCGCACGGATCGTGAGAACAAACTCCCGCGTCCACCGCGCCCACTATTCAACCCTCGCGTGCACGCGCG
CG------GGCTCCGCTCCCCGGGTGAG----CACACGAGACACGACCATCTATGCCCGGCAACAGCAAGAAGCTGTGGC
CGATCTGGGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCTGCAAGATAACGATGTGTGTATAT--------TTGTGTG
TACCCTCGTCGTTCTCCTTTTCTCACCTTGCAAGCAACCCCACTGGCACTTTGGCGATTTCATCAAGCTGTTAGGAGGAT
TTCCGTGTCACCTCTTTCAATGAGTTCCACTGTTTGCCCTAGACTGTCTAGAAGGCTTCTCCGATCCAAGTTGCATTTCC
T----CATGCATGGTACGTATCAGAGTTAATCAGCACGTGAAGAATTGTTGTTTTTTGAGAATGTGTGGCGTGAAATGCT
TGCACGAACTGTTCTAGAGGTTTGT-------TTAGTTAGGCATGGTGCTGGTGTTGTACACCGGTACACGGCAGCCAGC
GCTGGTCGCACAGAGTCGTACGTGAAAGCGGTTTTATGTGTAGGAA-TATTTCGGTGAATTATTAAATGAAGGAAGCTGC
AACCCTAGCTAGTAGCTAGATGAGCTCGGTCTCAGTCCCATCATCCATCCATCGCCGGCTTGGCCGCCTATAAATCCTCC
CGCACTTCGCCGCAAAAG-AACACAACTGAGAATCAAGACCAGTCCA--------------CTAAACCCCACACGCAACC
GCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACTAAGATCAGTTCCGTTCCGGCCATGAT
GAGCGGCGGCGGCAGCGGCAGCGG------CAGCGGCGCGGGGCCGAGCAGCTCCAGCTTCGAGCGGCACGCGAAGCGGC
GGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGACGCAGCACGGGCAGGGGGAGGAGGAC
GCGCTGGCGGCGGGCGTGGTGCCGCCGGTCACGGTGGTCCTGGACGGGCGCTGCATCTGCCACCGCATCCAGCTCAGCCG
CCACACCGGGTACCGCAGCCTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGACGCGGCCGAGGGCGACGACGACGACG
GGCTGGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGAGGACGACCTCCTCCTCGCCGGCGAC
CTCAGCTGGAAGTAAGTAAT-CTCACACTTGACCACGTACCGGTCTCACTTGTGACATTGATTTCTTTACCGAATTCTCG
TGTCGTTGGTTTTTGCCCGTTGTTGC-CAGGGACTTCTGCCGTGTGGCGAAGAGGATCCGGATCATCCCGGCGAAGTCGA
CGACCCGGAGGATCAAGCAATGCGGGGGCGCGGTGAACTAG----CTAGTCAGCCGCGCCCGGT---GAACCACAGGTGT
AATTAAGCCATACCTCTGCAGCTCCACTCCACTCTCAGCTCAGCTCAGCTCAACTCCGGCGAAAAAAAAGATCAAGTCCG
GCCGGCCCGTCGTCAACATCTCCCTAAAAATCAATAGAAATCATCGATCCAACCTTTTTTTTTCATTTTTCGCTGTATCA
AAAGTTCAATGTCGCATTGCCACAATGAGAAGAGAAAAGAGAGATCAATTTTCTGTTGGTGCGAGAGAGAAGAAAGCTAG
CTAGCATA----CGATGCGTGTCGTGCGATGCCCACCGGCTAGCTAGCCAGTGTCGCTAACCGGAACACTGTGCCGGCGT
CAAATCGTCGATCCGCCCCGCCCCACCCCCAGCACGCACGGCACGTCCCTCTCGACGTGACTCAGCGACCGCGCCCCCTC
GGCACCAGCCCGCCGTGTGTTTTTATCGCGAAAGCTCAGGCCCGGGTTGCTCCCGGCAGTTGGGATCTCCCTTTTGAGCG
CCACGTCGTTGAAGGAGGAACAGTGATGCGGATGCGCGTAGCCGTCGGGTG---CGTTACGTGCGCGGAGGCGCGATCGG
ACGTACGTGGAGCTGGCGGCCGA----GACGGAATGTCGTGTGCCCGTGCGCGCGGTTCACCGCCGGACCGATGGATCGG
CACGTACGCCACCCCACGTGTGGG----AACGGGTACGCTGCG------TACCACGGCGTCGGCGTCGCTCGTAAGGAGC
GCTGCTGCCTGTTCAATTACTGCGG------CG------ACGTCGACGTCGATCGTGGCCGGGCGGCCGGGAGTGTGACA
CAACGATCCGCGGACGCGCACGCGCACAGTTGATTTGGGACTTGAC---AGGCATGGATCCCGAAGGCGGCATGACTGTC
A-------TCCAC-------AGCATGGAAATTGGTAGACCAGACCAAC-------CTGGCACCATTATTGTTTCCCGGTA
AAATAGGCGGAGATCGGTGGTGTGCGTTGCGTGCAATGCCCATGGATCAACGATCAAGTGGGGAATCATGTCT
>chr2A_165
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----CGTCGCTTCTCACGGATCGTGAGAACAAACCCCCGCGTCCGCCGCCCCCACTATTCAACCCTCGCGTGCACGCGCG
CGCGGCCGGGCTCCGCTCCCCGGGCGAG----C-------ACACGACCATCTATGCCCAGCAACAGCACCAAGCTGTGCC
CGATCTGCGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCCGCAAGATAACGATGTGTATATATATGTGTGTTTGTGTG
TACCGTCGTCGCTCTCCTTTTCTCACCTCGCAAGCAACCCCACTGGCACTTTGGCGATTTCAT-AAGCTGTTAGGAGGAT
TTCCATGTCAGCTCTTTCCATGGGTTTCGCTGTTTGTACC----------------------------AGTTGCCCTTCA
T----CATGCATGGTACGTATCAGAGTTAACTAACACGTGTAGAACTGGTGCTTC-TGAGAACGTGTGGCGCCAAATGCT
TGCACGAGCTATTCTACTAGAGGTTCTAGGAATTTGTTAGGCA-------------------------------------
--TGGTCGCACAAAGTCGTACGTGAAAGCGTTTTTACGTGTAGGAA-TATTTCGGTGAATTGTTAAATGGAGGAAGTTGC
AACCCTAGCTAGTAGCTAGA---GCTCAGTCTCAGTCCCATCATCCATCCATCGCCGGCTTGGCCGCCTATAAATCCTCC
CGCACTTCGCCGCAAAAG-AACACAACTGACAATCAAGACCAGTCCA--------------CTAAACCCCACACGCAACC
GCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACGAAGATCAGTTCCGTTCCGGCCATGAT
GAGCGGCGGCGGCAGTGGCAGCGGCAGCGGCAGCGGCGCGGGGCCGAGCAGCTCCAGCTTCGAGCGGCACGCCAAGCGGC
GGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGATGCAGCAAGGGCAAGGGGAGGAGGAC
GCGCTGGCGGCGGGCGTGGTGCCGCCGGTCACCGTGGTCCTGGACGGGCGCTGCATCTGCCACCGCATCCACCTCAGCGG
CCACACCGGGTACCGCAGCTTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGACGCGGCCGAGGG---CGACGACGACG
GGCTCGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGAGGACGACCTCCTCCTCGCCGGCGAC
CTCAACTGGAAGTAAGTAATCCTCACACTTGACCAC----CGG-TTCACTTGTGACATTGATTTCCTTACCGAATTCTCG
TGTCGTTGGTTTTTGCCCGTTGTGTCGCAGGGACTTCTGCCGTGTGGCGAAGAGGATCCGGATCATCCCGGCCAAGTCGA
CGACCCGAAGGATCAAGCAATGCGGGGGCGCGGTGAACTAG----CTAGCCAGCCACGCCCGGT---GAACCACAGGTGT
AATTAAGCCATACCTCTGCAGCTCCACTCCGCTCTCAGCTCAGCCCAGCTCAACTCCGGCG-AAAAAAAGATCAAGCCCG
GCCGGCCCGTCGTCAACATCTGCCTAAAAATCAGTCGAAATCCTCGATCCAACCTTTTTC---CATTTTTCGCTGCATCA
AAAGTTCAATGTCGCATC-TCACAATGAAAAGAAAAAAGAGAGATCAATTTTCTGTTGGTGCGAGAGACAAGAAAGCTAG
CTAGCATA----GGATGCGTGTCGTCCGATGC---------------CCAGTGTCGCTAACCGGAGCACTGTGCCGGCGT
CAAATCGCCGATCCGA-----------CCCAGCACGCACGGCACGTCGCTCTCGACGTGACTCAGCGACCGCGCCCCCTC
G-----------CCGTGTGTTTTTATCGCGAAAGCTCAGCCCG-----------GGCGGTTGGGATCTCCCTTTTGAGCG
CCACGTCGTTGAAGTGCGAACAGTGATGCGGATGCGCGTAGCCGTCGCCGGGCACGTTACGTGCGCCGAGGCGCGATCGG
ACGTACGTGGAGCTGGCGGCCGGCCGGGACGGAATGTCGTGCGCCCGTGCGCGCGGTTCACCGCCGGATCGATGGATCGG
CACGTACGCCACTCCACGTGTGGGTGGGAGCACGTACGCTACGTACGATTACTACGGCGTCGGCGTCGCTCGTAATGAGC
GCTGCTGCCTGTTCAATTACTGCGG------CGGCGACGACGGCGACGTCGATCGTGGCCGGGCGGCCGGGAGTGTGACA
CAACGAGCCGCGGACGCGCACGCGCACAGTTGATTGGAGACTTGAT---GGCCATGGATCGCCGAGGCAGCATGACTGTC
ATCCACACTCCAC-------AGCATGGAAATTGGTAGACCAGATCGACCACCCTGCTGGCACCATTATTGCTTCCCGGTA
AAACGGGCGGAGATCGGTGGTGTGCGTTGCGTGCA-TGCCCTTGGATCAACGATCATGTGGGGAATCATGTCT
>SNPs
-------------------SSSSS-SSSSSSSSSSSSSSSS---------------S-----------------------
----------------------------S---------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------S-SSSS------------------------------------------------
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--------S------------------------------------------S----------------------------
-------------------S------------------------------------------------------------
-SSSS----------------------------S-------------S---------S----------------------
-------------------------------------------------------------S-------S----------
----------------------------------S-----------S----------S----------------------
---------S----------------------------------------S-----------------------------
-----------------SS------------S---S----------SSSSSSSSSSSSSSS-------------------
---------------------------------------------------------------S----------------
---------S----------------------------------------------------------------------
-----------------------------------------------------S-------------------S------
-----------------------------S------------------------------------------------S-
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---------------SS-SS-----------S---S------------------S-------------------------
--S---------------------------------------------S-----------------------S-------
-------------------------S--------S------SSSS----------S--------SSS-------------
---------------------------S----------------------------------------------------
---------SS---S-S-S---SSSSSSSSS-S-S-SSS-S---------------------------------------
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--------SSSS-------------------S------------------------------------------------
--------------------S-----------------------------------------------------------
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-------------------S------------------------------------------------------------
--------------S---------------S---------------S---------------------------------
---------------------S---SSSSSS---------------------------------S-------------S-
------SS--------------------------------------SSS-------------S-----------------
-------------SSSSSSS--------------S-----------S--------------S------------------
--------------------S---------------------------S---S--------------------
>forward_810
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----------------------------------------------------------------------AGGAAGTTGC
AACCCTAGCC----------------------------------------------------------------------
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>reverse_2465
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----------------------------------------------------------------TGCCGGGAGTGTGATA
CAAC----------------------------------------------------------------------------
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