>input_sequence_74960
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----------------------------------------ATGGAAGGGGGGAGCCTCTGGCACGAGTTCGAGACGGACC
TCCCGGCCGCCGACGTGTGGGAGGTCTATGGCAGCCTCGCTCTCGGGCAACTAGTCCCCCAGTTGCTCCCACAGGTCCTC
TCAAAGGTCGAGCTTGTAGAGGGAGACGGCGGCGCCGGAACAGTCCTGCTCGTCACTTTCCCTCCTGCAGGTCCGTG---
-----TCTCAAAACCTCAGCTTCAGGACGGTGCAGA------TGTAATCGCAGCTT------------------------
-CAGA----TTATTTTTACTTACTTGCGCTGGTT-CATTTTGCTAGGAGCTTCCGAACCAAGAAGCTACAAGGAGAAGTT
CAACGTAGTCGACGATGAGAAGTACATCAAGGAGGCAGAAACGGTGGAGGGAGGCTTTCTGGATCTCGGCTTCCGGAAAT
ATGTGGTGCGATTCGAGGTCGTTGGGAAGGAAGATGGCACGTCGGTTATAAGATCGACCGTCGAGTATGAGGTTGATGCC
GAGCATGCCAAGAATGCCTCCCTTGTCAGCACAGAAGCAGTGGCCTCTATTGCTGAGGCCATCACCAAGCACATCAAGGA
GCAGAAGAAGAGCCCCGAGCAAACCCCCGAGTAA----------------------------------------------
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>chr2A_1_TraesCS2A01G520800
CGCAAGAGCATTGCGCGCTTTTTGTATTAAGATAGAAGAGCAAAGTTTTTACAGGAGGTTACAAGCACTGAGAGCAGTGC
AGTCCACAAGGTACAGCCGCACAAGTACAAGTACAGTTCGGCGTGTCAGGAAGAGACGAGGGGCGCCTCCATGAACTCGC
GGCACACCTCGGTGCCAAGCTCCGTCAGCATCTCGGTCACGCCGGCGCCGGGCTCAGCCGCCTGCACGCGTCCGCTTTCA
TGCCTCACCGCCTCGGCCAGCATCGGCCGGACCTTCTCGGAGCGGACCACGCCGTCGCGCCACAGGCCAAGCCCCAGCGC
GTGGACGGGCGTCCTGCCGGTGGCCGGGACGAACGTCTGGTCCATGTACATCAGCATGTTCTGGATGACAGACATGGCAG
CCGTGTACCGGCACCACGCCGCAACCAGCTCAACCGAGCGCCGTTGCCGGTGAGGGACCCCGCGAGGCCCTGCATCTCAG
AGGCCATGGCGGCCTCCACCGCGGAGTAGAGCTCCTCCCCGCGCTCGCGAAGGACCACGGCGTAAACGCTCCTGCCGGTC
CACCATCTTACAAAACCATCAAGAAATGAAAATTGTCAACCATCTTCTAAAGACAAAAAGGGCTATTTGCTGGCCACCAA
CATAGCCGTACACGACATAGTAGATGAACATCGGTGTGACTACGCAGACGGGCATGACGTGGCGATGGCTGGATATTTTT
GATTTTTATGAGAAACCCTCTTTTATTCTAGCGCTTCTCGTAGAGATTTATATTTGAAAACACTTCTACACTTTTTATAT
GATGTTGGTTAATGTTATAGACACGAACAGCGCAGATCATTTTGAAAAGAAGGGATTCCATTTTGGAAAAGAAAAACTTT
GAGTGGTCTGTATGCAATCTTGCCATGTGTACGGATAGAACCGGTCACTGCCGGATGGATGCAATCCGTACATGTGGTCT
ACAGAACACCATTCTTGGACTCCAGCAGCGCGAGAGAGCAATGGAAGGGGGGAGCCTCTGGCACGAGTTCGAGACGGACC
TCCCGGCCGCCGACGTGTGGGAGGTCTATGGCAGCCTCGCTCTCGGGCAACTAGTCCCCCAGTTGCTCCCACAGGTCCTC
TCAAAGGTCGAGCTTGTAGAGGGAGACGGCGGCGCCGGAACAGTCCTGCTCGTCACTTTCCCTCCTGCAGGTCCGTG---
-----TCTCAAAACCTCAGCTTCAGGACGGTGCAGA------TGTAATCGCAGCTT------------------------
-CAGA----TTATTTTTACTTACTTGCGCTGGTT-CATTTTGCTAGGAGCTTCCGAACCAAGAAGCTACAAGGAGAAGTT
CAACGTAGTCGACGATGAGAAGTACATCAAGGAGGCAGAAACGGTGGAGGGAGGCTTTCTGGATCTCGGCTTCCGGAAAT
ATGTGGTGCGATTCGAGGTCGTTGGGAAGGAAGATGGCACGTCGGTTATAAGATCGACCGTCGAGTATGAGGTTGATGCC
GAGCATGCCAAGAATGCCTCCCTTGTCAGCACAGAAGCAGTGGCCTCTATTGCTGAGGCCATCACCAAGCACATCAAGGA
GCAGAAGAAGAGCCCCGAGCAAACCCCCGAGTAAAATTCAGAAGAACT--TGCATGTGCCTGG-----------------
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--ATAAGAGTCGGGAAGACGAAGTGTCCAACTGAAGTGACTGTGGCAGCCAAGTTGGAGCAAA--TTCCCCTGTACCATT
TTGTTCTA----TATATGCAGTGCTCATGCCTTTGGAATTGATGTTTGTATGT---------------------------
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----------------TTTAGATTATACACTAGTTTCTA------CCTGTCAACATGTACAAAATCTGTA----CAAATA
TTGTAGTTTAACACAAGTGCAGAGGTCAAGCCATTGGCCATGAATGTTAGAAGGACCGGATGGAGGGAGGAGACGGTCGA
AGGATTGACCTATAGAGGTCCTTGAGTCAGACGTTCGCCGTGTCCTGGGCGTAGATGTCGCGGATGGTGCCCGTCACCGC
CTCGCAGGTGCCGGCGACGACGCCGAGGATAGTTGCGCCCACCTCCTCCCTCTGCCGGAAAGCTGCGGTCTTCCATTGTT
GGCCCCCGGTGGACATGGCGGCGCAACGGGATCACGAACACGCGACACCGATAGCTCAAGAACAAATCAAGAGCAGCGGA
TGTGAAATGCATGGATGAACCTGGATACATATGAACTCACTTCGGAAAACATATTTCTAAATGCTAAAAAAGTATGAAAA
AACTTGCACGCGTACGTCTTCACGTTCTATGTGCGAAAACATATTTCTAAATGCTAAAAAAATATTAAAAAATTAAACGC
GTACGTCTCCATGTTCTATGTGCGTGCATAAAGTTTCACGGAAAAATAAATTTTTTGGCCTGTGCAAGAAAGACAAAAAA
ATGTGTCATAAAACGCTATTTAGAAGCACTGAAATTTGTCTTTTTTATGAAAACAAAACAAAATACATTTTTTTCATAAA
ACTTTATGTTCCGCATGCACATTTACAAACATGTATGCGTGAATTTTTCTTTTTGAATTTTTTGACATTTTAAAACATGC
TTAAAATGCATTTTTTGAAAAATGGGTGTAGATGCCTATGTGTTGAGGACATGCTCACTCAGCAGTGCACGAAC
>chr2B_972
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-----------TTCTTGGACTCCGGCAGCGCCAGAGAGCAATGGAAGGGGGCAGCCTCTGGCACGAGTACGAGACGGACC
TCCCGGCCGCCGACGTGTGGGAGGTCTATGGCAGCCTCGCTCTCGGGCAACTAGTCCCCCAGCTGCTCCCGCACGTCCTC
TCAAAGGTGGAGCTTGTGGAGGGAGACGGCGGCGTCGGCACAGTCCTGCTCGTCACTTTCCCTCCTGCAGGTTCGAA---
-----TCTCAACACCTCAGCTTCAGGATGGTGCAGA------TGTAATCGCCGCTT------------------------
-CAGT----CAATTTTGACCTAGTTGTGTTGATT-CATTTTGCTAGGAGCTTCCGAACCAAGAAGCTACAAGGAGAAGTT
CAAGGTAGTGGACCATGAGAAGTACATCAAGGAGGCAGAAACGGTGGAGGGAGGCTTTCTGGATCTCGGCTTCCGGAAGT
ATTTGGTGCGATTCGAGGTCGTAGGGAAGGAAGATGGCACGTCAGTTATAAGATCGACCGTCGAGTATGAAGTTGACGCC
GAGCATGCCAAGAATGTCTCCCTTGTCAGTACAGAAGCATTGGCTTCTGTTGCTGAGGCCATCACCAAGTACATCAAGGA
GCAGAAGAAGAGCCACGAGCAAGCCAACGAGTAAAATTCGGAAGAACATGTGCATGTAGCTGC-----------------
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--ATAAGAGTCTGAAAGACCAAGTGTCCAACTGAAGTGACTGTGGCAGCCAAGTTGGAGCAAATTTTCCCCTGTACCATT
TTGTTCTCTATGTATATGCAGCGCTCATGCCTTCGGAATTAATGTTTGTATGT---------------------------
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----------------TTTAGATTG-----TAGTTTCTA------CCTGTCAACATGA-CAATATCTGCACGATCGAATA
TTGTAGTG--ATACATGTGCAGAGGTCA-GCCATTGACCATGAATGTTAGAAG---------------------------
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>chr2D_972
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-----------TTCTTGGACTCCAGCAGCACGAGAGAGCAATGGAAGGGGGCAGCCTCTGGCACGAGTACGAGACGGACC
TCCGGGCCGCCGACGTGTGGGAGGTCTATGGCAGCCTCGCTCTCGGGCAACTAGCCCCCCAGCTGCTCCCGCACGTCCTC
TCAAAGGTCGAGCTTGTAGAGGGAGACGGCGGCGTCGGCACAGTCCTGCTCGTCACTTTCCCTCCTGCAGGTCCGAA---
-----TCTCAAAAGCTCGGCTTCAGGATGGTACAGA------TGTAATCGCAGCTT------------------------
-CAATCAGTTTTTAGTTACCTGCATGTGCTGAAT-CATTTTGTTAGGAGCTTCCGAACCAAGAAGCCACAAGGAGAAGTT
CAACGTAGTCGACCATGAGAAGTACATCAAGGAGGCAGAGACGGTGGAGGGAGGCTTTCTGGATCTCGGCTTCCGGAAAT
ATTTGGTGCGATTCAAGGTCGTAGGAAAAGAAGATGGCGCATCCGTTATAAGATCCACGGTTGAGTATGAAGTTGATGCA
GAGCATGCCAAGAATGTCTCCTTTGTCAGCACAGAAGCAATGGCTTCTATTGCTGAGGCCATCACCAAGTACATCAAGGA
GCAGAAGAAGAGCCACGAGCAAGCCGCCGAGTAAAATTCAGAAGAACA--TGCATGTAGCTGC-----------------
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--ATAAGAGTATGAAAGACGAAGTGTCCAACTGAAATGACTGTGGCAGCCAAGTTCGAGCAAA--TTCCCCTGTACCATT
TTGTTCTA----TATATGCAGTGCTCATGCCTTTGGAATTAATGTTTGTATGTGTCACACCTGCATCACCAGTGGTGGAT
GCCGTGGACGTGTGAGGTGGGACCCGGCTGCCAGTTGGCATTGGTCCACTTGTAAGCGCAACATTGAGCGTGTGTGGCTG
GGTTATAAGGCCAGCGGTAGCCAGCAGGATAGGCAGGCATGATTTGTATCTAAACTGGATCCCTCACCTACTCCTGTACT
CTCATCTTCCTTGGCAAGAAAGCTATCTTCCCAAGTCCCATCTCATCCCCTTTCCCTTCTGATCCGATCTGAGATGATGA
GTTCGTGACAGTATGTTTTAGACTGT--ACTAGTTTCTAGGAGTACCTGTCAACATGTGCAATATCTGTA----CGAATA
TTGTAGTTTAACACATGTGCAGAGGTCAAGCCATTGGCCATGAATGTTAGAAGG--------------------------
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>chr2A_998
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-------------------------------------GCAATGGAAGGGGGGAGCCTCTGGCACGAGTTCGAGACCGACC
TCCCGGCTGCCGACGTATGGGAGGTCTATGGCGGCCTCGCCGTCGGGCGACTAATCCCCCAACTGCTTCCACATGTCCTC
TCAAAGGT----------------------GGCGTCGGCACAATCCTGCTCGTCACCTTCCCTCCTGAAGGTTCGAATCT
CAAGTTCTCAACAGCTGAGCTTCAGTACGGTACAGTACATATTGTAATCCCAGCTTTCAGGTAAATTATTATTAAGCCCA
ACAGG----TAATTTTTACCAACCTTTATCTCATCCATTTTGCTAGGAGATTCCGAACCAAGAAGCTACAAGGAGAAGTT
CAACGTAATCGACAATGAAAAGTACATCAAGGAGGCAGAAACGATCGAAGGAGGCTTTCTAGATCTCGGCTTTCGGAAAC
ATTTGATGCGAATCGAGATCGTAGGAAAAGAAGATGGCAAATCCGTTATAAGATCCACCGTCGAGTATGAAGTTGATGCC
GAGCATGCGAAGAATGTCTCACTTGTCAGTACACAAGCATTGGCTTCTGTTGCTGAGGCCATCACCAAGCACATCAAGGA
GCAGAAGAAGAGCCCCGAGCAAGCCACCGAGTAAAATTCAAAAGAACG--TGCATGTACTCCCTCCGGTTCTTTTTACTC
TGCATATTAGAATTCTTTAAAGTCAAACTTCACAAAGTTTGACCGTATTTATATGAAAAAATATCAACATCTGCCATGCT
AAAATTATATAATATGAAACTTTAAGTCATGACACATCTAGTAGTATTGATTTTAGATTGTGAATGTTGGCACTTTTTTC
TATAAAGTTGGTCAAACTTTACGAGGCTTGACTTCAGTCAAATCTTATATACGAACTAAAAAGGACCGGAGGGAGTACCT
GAATAAGAGTCTGAAAGACGAAGGGTCCAACTGAAGTGACTG--GCAGCCAAGTTTGAGCAAA--TTTTCCTGTAGTACT
ATTTTATTC-----TATGTTGTGCTCATGCCTTTGGAATTAAATGTTT--------------------------------
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----------GTATGTTTTAGATTGT--AGTAGTTTCTA------CCTGTCAACATGA-AAATACCTTACGAATAGGGCG
-------------CATGTGCAGAGGTCAAGCCATTGGCCATGAATGTTAGAAGG--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
--------------------------------------------------------------S----------S------
----------------------------------S---S------------------------------------SS---
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----S--------------S------S----S------------------------------------------------
-------------S------------------------------------------------------------------
--S-------------------S--------------------S--------------------------S---------
----------------S----------------------S----S-----------------------------------
----------------------S--S---------------------S---------S----S-----------------
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-----------S-S------------------------------------------------------------------
----------------------------------------S---------------------------------------
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------------------------S-SS------------------------------S---S------------S----
---------------S--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_573
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-------------------------------------------------------------------------GCCGGTC
CACCATCTTACAA-------------------------------------------------------------------
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>reverse_2499
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------------------TCCTTGAGTCAGACGTTCGC------------------------------------------
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