>input_sequence_74945
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---------------------------------------ATGGCGTTGACGGCCGCGCTGGGGAGACGGGGAGCGGAGCA
AGATCAGGAAGGCGGTGGCGGCGGCAATGGTGGCAATGGCAATGGTGGCGGCGAGGGGAGGATGATCATGCGGGAGGACA
TGTTCGACAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTGGTGGTGCCCAAGCACTTCGCGGAGCGGCAC
CTCCTCCCGCGGGTCCCCGGCGGCGCGGCGGGGGCGGCCTGCCCCGGAGCCGTGCTGCGGTTCGAGGACGGCCGCGGCGG
CGGGAAGGCGTGGGCGTTCCGCTTCTCCTACTGGAGCAGCAGCCAGAGCTACGTCATCACGAAAGGGTGGAGCGCCTTCG
TCCGCGACCGCCGTCTTGCCGCCGGCGACACCGTCTCCTTCTGCCGCGCCGGCGCGCGCCTCTTCATCGACTGCCGGAGG
CGTGGGGCCGGG---GTCGTCTCGGCGCCGACGACATGCCTCCTCGTTCCAGTGGCGC---------------------T
TCCGCAGCAGGCGACGTTGGACCAAGACAGGGCACCGCGCGGGCGGCGCCTCCGGCTGTTCGGCGTGGACCTCGAGCTCG
CCGGTGCAGAATGA------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G362500
CACCAATCAATTATATATAACACTAATTCTGTAGTTGATTTCTCTTTAATTTGTGTATACTCCATCTAATTTTGCTGGTC
TCTATACATATATATAGCTCAAATAGCTGGCATGTCTCTTTATTTTCCAGG--TAATGTCTATGCCGACTTGTTCCAAGT
GAGACAAAGTTAATTGGCAGTTGACCTTGTCGTTCATCATCCATC----CTCTCTTGTCTCTAGAGCTTATCATGGCATG
TATATACTTGTATAGTGCCACTGAGCTTGTACCTGCAAGTGGCACTGATTATCTAGTACCAACTATCTATCTATGCACAT
CTGTCACATCCATGACTTCTCATCACATGATTTGTTTAAGGTAACCATCTGGCTTAAACCACTGAACTTGACCAGGACCT
TTTCTTGCAAGCACAATCTTCCCAAATTACCGCGTTAAGAAGATTTACGCCGAGCAAACAAAAGTAACCTACAAAAC-TG
CTAAACTTACGTAGATTGTTTAAGGATGTATATCCAGTAGATGTGGAATTACTGAGTGATCTACCGTGCGTACGTGTTGA
CTTT--GAGTCCATTGTCGTTTGTACGGCAATTAGTACATAC------AT------------------------------
AAGTATGTTGTATGCTGAC-CCGATTAGCTTTAGCTTGAATCGATCGCAAACTAGTGATTGTCATTGCTTCATCTTCATG
GTTTCACATGCACCTG-------CTT--------CCTAGTGCGCAATTAGCATGAAATAACGCGTGACACGTCAGACATG
CATGCCACCAGCTAGCCAACCGAACCGAAATGTCTATTGGATCAATGAGAGTTTGTGGACCGTACGTCCTC---------
-GAAATCAACGGCTCGGATTAACCGCCAAGCGAGAGGAGTGCCTTGCATGGGAAAAGTCTAGGCGTTGACGACTTGGCGC
GCAAACCACGAATA--------TCCCATCTATATAGACACACACATGCCAAGGCGTGCTTCTGATTTGGATTAACCAACA
GACCGATCCACAAGTTGAGCTGCAGAATAAGATAGATCAATGGCGTTGACGGCCGCGCTGGGGAGACGGGGAGCGGAGCA
AGATCAGGAAGGCGGTGGCGGCGGCAATGGTGGCAATGGCAATGGTGGCGGCGAGGGGAGGATGATCATGCGGGAGGACA
TGTTCGACAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTGGTGGTGCCCAAGCACTTCGCGGAGCGGCAC
CTCCTCCCGCGGGTCCCCGGCGGCGCGGCGGGGGCGGCCTGCCCCGGAGCCGTGCTGCGGTTCGAGGACGGCCGCGGCGG
CGGGAAGGCGTGGGCGTTCCGCTTCTCCTACTGGAGCAGCAGCCAGAGCTACGTCATCACGAAAGGGTGGAGCGCCTTCG
TCCGCGACCGCCGTCTTGCCGCCGGCGACACCGTCTCCTTCTGCCGCGCCGGCGCGCGCCTCTTCATCGACTGCCGGAGG
CGTGGGGCCGGG---GTCGTCTCGGCGCCGACGACATGCCTCCTCGTTCCAGTGGCGC---------------------T
TCCGCAGCAGGCGACGTTGGACCAAGACAGGGCACCGCGCGGGCGGCGCCTCCGGCTGTTCGGCGTGGACCTCGAGCTCG
CCGGTGCAGAATGATAGCAGATTAATTACGCACATTACTGTTAGATCATCGAAGAAAGAAGATATGAAGTTGAATTCATG
TAGTGTTCGGGACGTGGATTTTTAGAACAGCTGCACCCCGGCCCTTGTATCCTGGTTGTCCAATATTGCTTTAAGATCTG
TGCAACACAACTAACTTTTCGTATGAAAATTTCTCTTTTTTGTTTCTCTCACATAAAAGATGTCTTGAACTTCAAACCTT
TGCAGCGTGGCAAAGCTTTCCATCTAGAATCTAGGATAAATCTTTCAGAATTTTTTGTCAAACATAAATATACAAAAAAT
GATTTTTTACATTAAAAAATCGATTTTTGTATATTTATATTTGACAAAAAAATCTAAAAGATTTATCCTAGATTCTAGAT
AGAAAACTTTGCTACGCTGCAAAGGTTTGAACTTCAAAATATGTTTTATGTGAGAGAAACAAAAAAGAAAAATGTGTTTG
CACGAATCGCGATGCGCAGAATGGATGGCTAGATAGAGAGGGCCCGGGTGCAGCTGTGCTATTTTATATTTTCGGTAGTG
TTCGACTGTTCGTCAATGACAATCTCAAATTACTAGTAGTC---TAGTACGATGCTACGATTGATTAAGTAGTTAAATGA
TAATCTCAAGTTCCATCGACGACGCTAGCGCGATGCAGTCGGGGGCGTCTCCGCGCCGCAGCTCCTGCTCGCCGTTGTAC
CCCTTGGCGGCGGCGGCGATCTCCTTGGTCTTGCCCCAGAGGAACGCGTAGCTTGCATACACTGTTGGGCTTGTATAGCA
CGAAATTTAAAATACCTCTGGGCCTGACTTGCTGAAAACGTTCAGATCGGCAGTTTCTTGTGAGCCAGGCCGAGACTAGC
GAAAACGAGCGGGCCTTTGCATGAGTGAAGATGGAAGGGATGTGAGGCGTTTACATGGTGTCTTTCTTAAACCTCCAATA
AGCTGCTCTCTAATCTTCTTTCTTCCATGTTCCTCTGATCTACACAACGGTGCTTCG
>chr7D_1
CACCAATCAAT----TATAACACTAATTCTGTAGTTGATTTCTCTTTAATTTGTGTATACTCCATCTAATTTTGCTGGTC
TCTATACCTATATATAGCTCAAATAGCTGGCATGTCTCTTTATTTTCCAGG--TAATGTCTATGCCGACTTGTTCCAAGT
GAGACAAAGTTAATTGGCAGTTGACCTTGTCGTTCATCATCCATCGATCCTCTCTTGTCTCTAGAGCTTATCATGGCATG
TATATACTTGTATAGTGCCACTGAGCTTGTACCTGCAAGTGGCACTGATTATCTAGTACCCACTATCTATCTATGCACAT
CTGTCACATCCATGACTTCTCATCACATGATTTGTTTAAGGTAACCATCTGGTTTAAACCACTGAACTTGACCAGGACTT
TTTCTTGCAAGCACAATCTTCGCAAATTACCGCGTTAAGAAGATTTACACCGAGCAAACAAACGTAACCTACAAAACTTG
CTAAACTTACGTAGATTGTTTAAGG-TGTATATCCAGTAGATGTGGCATTACTGAGTGATCTACCGTGCGTACGTGTTGA
CTTTCCGAGTCCATTGTCGTTTGTACGGCAATTAGTACATACTCCTATAT------------------------------
AAGTATGCTGTACGCTGACGCCGATTAGCTTTAGATTGAACCGATCGC-AACTAGTGATTGTCATTG------CTTCATG
GTTTCACATGCACCTG-------CTTGGCTGCTTCCTAGTGCGCAATTAGCATGAAATAACGCGTGACACGTCAGACATG
CATGCCACCAGCTAGCCAACCGAACCGAAATGTCTATTGGATCAAAGAGAGTTTGTAGACCGTACGTCCTCATGATCACT
AGAAATCAACGGCTGAGATTAGCCACCAAGCGAGAGGAGTGCCGTGCATGGGAAAAGTCTAGGCGTTGACGACTTGGCGC
GCAAACCACAAAGATCCCATATTCCCATCTATATATACACACACATGTGAAGGCGTGCTTCTGATTGGGATTAACCAACA
GATAGATCGACAAGTTGAGCTGAGGAATAAGATAGATCAATGGCGTTGACGGCCGCGCTGGGGAGACGGGGAGCGGAGCA
AGATCGGGACGGC---GGCGGCAGCAATGGTGGCAATGACAATGGCGGCGGCGAGGCGAGGATGATCATGCGGGAGCACA
TGTTCGACAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTGGTGGTGCCCAAGCACTTCGCGGAGCGGCAC
CTCCTCCCGCGGGTCCCCGGCGGCGCGGCGGGGGCGGCCTGCCCCGGAGCCGTGCTGCGGTTCGAGGACGGCCGGGGCGG
CGGGAAGGCGTGGGCGTTCCGCTTCTCCTACTGGAGCAGCAGCCAGAGCTACGTCATCACGAAAGGGTGGAGCGCCTTCG
TCCGCGACCGCCGTCTCGCCGCCGGCGACACCGTCTCCTTCTGCCGAGCCGGTGCGCGCCTCTTCATCGACTGCCGGAGG
CGTGGCGCCGGG---GTCGTCTCGGCGCCGACGACAAGGCTCCTCGTGCCAGTGGCGC---------------------T
TCCGCAGCAGGCGACGTCGGACGAAGACAGGGCACCGCGCGGGCGGCGCCTCCGGCTGTTCGGCGTGGACCTCGAGCTCG
CCGGTGCAGAGCGATAGCAGATTAATTACGCACATTACTGTTAGATCATCGAAGAAAGAAGATATGAAATTGAATTCCTG
TAGTGTTCG-----------------------------------------------------------------------
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------------TCAATGACAGTCTCAAGTTACTAGTAGTCTAGTAGTACGATGCTACGATTGATTGAGTAGTTAAATGA
CAATCTCAAGTTCCATCGACGATGCTGTCGCGATGCGGTCGTCGGCGTCTCCGCGCCGCAGCTCCTGCTCGCCGTTGTCT
CCCTTGGCGGCGGCGGCGAGCTCCTTGGTCTTGCCCCAGAGGAACGCGTAG-----------------------------
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>chr7A_1
CACCAATCAAT----TATAACACTAATTATGTGGTTGATTTCTCTTTAAATTGTGTATACTCCATCTAATTTTGCTGGTC
TCTATACATACATATAGCTCAAATAGCTGGCATGTCTCTTTATTTTCCAGGTATAATGTCTATGCCGACTTGTTCCAAGT
GAGACAAAGTTAATTGGCAGTTGACCTTGTCGTTCATCATCCATC----CTCTCTTGTCTCCAGAGCCTATCATGGCATT
CATATACTTGTATAGTGCCACTGAGCTTGTACCCGCAAGTGGCACTGATTATCTCGTACCCACTATCTATCTATGCACAT
CTGTCACATCCATGACTTCTCATCACATGATTTGTTTAAGGTAACCATCTGGTTTAAACCACTGAACTTGACCAAGACCT
TTTCTTGCAGGTACAATCTTCCCAAATTACCGCGTTAAGAAGATTTACACGGAGCAAACAAACGTAACCTACAAAACTTG
CTAAACTTACGTAGATTGGTTAAGG----ATATCCAGTAGATGTGGCATTACTGAGTGATCCACCGTGCGTACGTGTTGA
CTTTCCGAGTCCATTGTCGTTTGTACGGCAATTAGTACATAC------AGTACACGGTAATTATATAGGTATATAATATA
AAGTATGCTGTATGCTGACGCCGATTAGCTTTAGGTTGAATCGATCGCT-ACTAGTGATTGTCATTG------CTTCATG
GTTTCACATGCACCTGCTTGCTGCTTGGCTGCTTCCTAGTGCGCAATTAGCATGAAATAACGCGTGACACGTCAGACATG
CATGCCACCAGCTAGCCAACCGAACCGAAATGTCTATTGGATCAAAGAGAGTTTGTAGGCCGTACGTCCTCATGATCACA
AGCAATCAACGGCTGAGATTAACCACCGAGCGAGACGAGTGCCGTGCATGGGAAAAGTCTAGGCGTTGACGACTTGGCGC
GCAAACCACAAAGATCCCATATTCCCATCTATATATACGCACACATGTGAAGGCGTGCTTCTGATTGGGATTAACCAACA
GATAGATCCACAAGTTGAGCTGAGGAATAAGATAGATCAATGGCGTTGACGGCCGCGCTGGGGAGACGGGGAGCGGAGCA
AGATCGGGACGGC---GGCGGCAGCAATGGTGGCAATGGAAATGGCGGCGGCGAGGCGAGGATGATCATGCGGGAGCACA
TGTTCGACAAGGTGGTGACACCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGGTGCCAAAGCACTTCGCGGAGCGGCAC
CTCCTCCCGCGGGTTCCCGGCGGCGCGGCGGGGGCGGCCTGCCCCGGAGCCGTGCTGCGGTTCGAGGACGGCCGCGGCGG
CGGGAAGGCGTGGGCGTTCCGCTTCTCCTACTGGAGCAGCAGCCAGAGCTACGTCATCACGAAAGGGTGGAGCGCCTTCG
TCCGCGATCGCCGCCTCGCCGCCGGCGACACCGTCTCCTTCTGCCGCGCCGGCGCGCGCCTCTTCATCGACTGCCGGAGG
CGTGGCGCCGGG---GTCGTCTCGGCGCCGACGACAAGCCTCCTCGTGCCAGTGGCGC---------------------T
TCCGCAGCAGGCGACGTCGGATGAAGACATGGCACCGCGCGGGCGGCGCCTCCGGCTGTTCGGCGTGGACCTCGAGCTCG
CCGGTGCAGAATGATAGCAGATAGATTACGCACACTACTGTTAGATCATCGAAGAAAGAAGATATGAAATTGTATTCATG
TACTGTTCGG----------------------------------------------------------------------
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>chr7D_997
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-----------------------------------ATCAATGGCGTTGACGGCCGCATGGGAGAGCAGAGGGGCAGAGCA
AGAGGGGGGAGGAGGAGGAGTCGAGCCGTCGCGCAGCGGCAAGGGTGGCAATGGCGAAGAGAGGATCAAGCGGGAGCACA
TGTTCGACAAGGTGGTCACGCCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGGTGCCGAAGCAGTTCGCGGAGCGGCAC
ATCCTGCCGCGGCTGCTCGGCGGCGCGGCGAGGGCGGCCTGCCCCGGCGCCGTGCTGCGGTTCGAGGACGGCCGCGGCGG
CGGGAGGGCGTGGGCGTTCCGCTTCTCCTACTGGGGCAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCGCCTTCG
TCCGCGACCGCCACCTCGCCGCCGGCGACACCGTCTCCTTCTGCCGCGCCGGCGCACGCCTCTTCATCGACTGCCGGCGG
CGTGGCGCCGGAATAGTAGCCTCGGCCCCGCCGACACGCCTCCTCGTGCCAGCGGTGGTGCCGCAAGTCGTCACGCTCAT
GCCGCAGCGGTCGACGTCCTCAGACGAGAGGGCGCCGCGCGGCCGGTGCGTCCGGCTGTTCGGCGTGGACCTCGAGCTCG
CCGGCGCCGA----------------------------------------------------------------------
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>chr4A_997
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-----------------------------------ATCAATGGCGTTGACGGCCGCATGGGAGAGCAGAGGGGCAGCGCA
AGAGGGGGGAGGAGGAGGAGTCGAGCTGGCGCGCAGCGGCAAGGGTAGCAATGGCGAAGAGAGGATCAGGCGGGAGCACA
TGTTCGACAAGGTGGTGACGCCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGGTGCCGAAGCAGTTCGCGGAGCGGCAC
ATCCTCCCGCGGCTGCTCGGCGGCGCGGCGAGGGCGGCCTGCCCGGGCGCCGTGCTACGGTTCGAGGACGGCCGCGGCGG
GGGGAAGGCGTGGGCGTTCCGCTTCTCCTACTGGGGCAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCGCCTTCG
TCCGCGACCGCCGCCTCGCCGCCGGCGACACCGTCTCCTTCTGCCGCGCCGGCGCACGCCTCTTCATCGACTGCCGACGG
CGTGGCGCCGGAATAGTAGCCTCGGCGCCGGTGACACGCCTCCTCGTGCCAGCGGTGGTGCCGCGAGTTGTCACGCTCAT
GCCGCAGCGGTCGACGCCCTCAGACGAGAGGGCGCCGCGCGGCCGGTGCGTCCGGCTGTTCGGCGTGGACCTCGAGCTCG
CCGGCGC-------------------------------------------------------------------------
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>chr7A_1079
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-------------------------------------GGCAATGGTGGCAATGGCGAAGAGAGGATCAAGCGGGAGCACA
TGTTTGACAAGGTGGTGACGCCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGGTGCCCAAGCAGTTCGCGGAGCGGCAC
ATCCTCCCGCGGCTGCTCGGCGGCGCGGCGAAGGCGGCCTGCTCGGGCGCCGTGCTGCGGTTCGAGGACGGCCGCGGCGG
GGGCAGGGCGTGGGCGTTCCGCTTCTCCTACTGGGGCAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCGCCTTCG
TCCGTGACCGCCGCCTCGCCGCCGGCGACACCGTCTCTTTCTGCCGCGCGGGCGCACGCCTCTTCATCGACTGCCGGCGG
CGTGGCGCCGGAATAGTAGCCTCGGCGCCGATGACACGCCTCCTCGTGCCAGCAATTGTGCCGCAAGTTGTCACGCTCAT
GCCGCAGCAGTCGACGTCGTCAGACGAGAGGGCGGCGCGTGGCCGCTGCGTCCGGCTGTTCGGCGTGGACCTCGAGCTCG
CCGGCGCCGA----------------------------------------------------------------------
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>chr7A_1079
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-------------------------------------GGCAATGGTGGCAATGGCGAAGAGAGGATCAAGCGGGAGCACA
TGTTTGACAAGGTGGTGACGCCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGGTGCCCAAGCAGTTCGCGGAGCGGCAC
ATCCTCCCGCGGCTGCTCGGCGGCGCGGCGAAGGCGGCCTGCTCGGGCGCCGTGCTGCGGTTCGAGGACGGCCGCGGCGG
GGGCAGGGCGTGGGCGTTCCGCTTCTCCTACTGGGGCAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCGCCTTCG
TCCGTGACCGCCGCCTCGCCGCCGGCGACACCGTCTCTTTCTGCCGCGCGGGCGCACGCCTCTTCATCGACTGCCGGCGG
CGTGGCGCCGGAATAGTAGCCTCGGCGCCGATGACACGCCTCCTCGTGCCAGCAATTGTGCCGCAAGTTGTCACGCTCAT
GCCGCAGCAGTCGACGTCGTCAGACGAGAGGGCGGCGCGTGGCCGCTGCGTCCGGCTGTTCGGCGTGGACCTCGAGCTCG
CCGGCGCCGA----------------------------------------------------------------------
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>SNPs
-----------SSSS-----------------------------------------------------------------
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------------------------------------------------------------S-------------------
----------------------------------------------------S---------------------------
------------------------------------------------S-------------S-----------------
-------------------------S--------------------S---------------------------------
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-------S--------------------------S-------------S------------------SSSSSS-------
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---------------------------------------------S----------S-----------------------
--------------SS--------S------------------S------------------------------------
---------S--S----------------------S-----------SS-----------------S-------------
--SS------------------SS--------------------------------------------------------
-----S---------S----------------------------------------S-------------------S---
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----------------S---------------------------------------------------------------
-----S------------------------------S----------S--------------------------------
-----------------S----S---------------------------------------------------------
--------------------------------------------------------------------S-----------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---------S------S-------------------------------------S-------------
S---------------------S---SS--------S----SS-----------------------------------SS
-------------------S-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1063
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---CGATCCACAAGTTGAGCTGC---------------------------------------------------------
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>reverse_2501
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--------------------GGCCTGACTTGCTGAAAACG----------------------------------------
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