>input_sequence_74919
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---------------------------------------------------------------ATGGCTGCGACGCCGGC
GGACGCAAGCAGCAGCAGCAGC------GAGGCCGTGGTGGGCGGCGAGAAGAGCAACAAGATGATCACGCTGATCAGCT
CCGACGGCGAGAGCTTCGAAGCCACGGAGGAGGCGGCGAAGATGTCGGTGACCATCAAGCACATGATCGAGGACGGCTGC
GCCGACGACGGGATCCCCCTCCCCAACGTCCCCGCCAAGATCCTCTCCATGGTCATCGAGTACTGCAACAAGCACGCCGC
CGACGCCG------ACGACACTAACAAGCACGTCGCCGACCCCGCCGACGCCGACGAGGACGACGACAATAACAACAACA
ACGCCAGCGCCGGCGAGAAGGATGACCTGAAGAGCTTCGACGCCAGCTTGGTCGCCGTCGACCAGGCCACGCTGTTCGAC
ATCATCCTCGCCGCCAACTTTCTGAGCATCAAGGGGCTCCTGGACCTCGCCTGCCAGAAGGTGGCCGACGACATCAAGGA
CAAGTCGGTTGAGGAGGTGCGCGAGATTTTCAAGATCGAAAACGACTTCACCAAGGAAGAGGAGGAGGCCGTCAGAAAGG
AAAACGCCTGGGCCTTCAACGAGTAG------------------------------------------------------
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>chr5D_1_TraesCS5D01G176900
TTTCACCATAAACAACGAGGTGGGG-CCGGTTTAGAAAAATTAGGGTTATCACATGGTTTGAAAAAAAGATCGATGAGAA
GGGCATATACTGATGGGAAAGGTGGAAGCGATGAAATCAAAACCAACAAA-CTCCACTTTAATGATAGAGGATTATAAAT
ATGTAAATAGTTTTAAGGGCAGCGCTATCTGTCGGCCGACGAATAATTAAAAAAGATCTACCGTCTCGCTGACCATTGGA
TGAACACACTAATGGTCGTTCGATGTTCGATGCACCCACGTGATCAACCATCCCTTCACAACAAGAGTCATGTTGCGGTA
TTTTCTGCAACAGATTTCTTGATGCACAAAATTTCCGCAACATAGGTCTTGTTGCAGAAATTTTCCGTAACATGGCTCTT
ATTACAGAAAATTTTCACAACAAAGACATGTTGCAGGA-AAAAAAATGGACGATACTTTTA---GGAGGCTGAAACAGGG
CTGTTTTGCAATAAGAGGCTTGTTGCAATTGCAACATGCGCTCTGTTGCAAAACCAAAACCACCCTCTGAGGCGCGTCAG
TCTGCTTCGCAGGCCATGTGGCGCGTAACCAAGGCAGCGGACATGGGCATGATAATCCGCCGGCTGATTCTGATCGTTTT
CCTAATTTATTTAAAAGGTATATAATTGGCCAATTTTGATCAGGTAAATATTCCATACTCTTGAATCTCCGAGAGTAGTC
ATGAGCGTGCCCAGTAAAAGTTCGATCGAAACTCGACGCAAAAAAAAAA-----GAGTCGGATCAAAACACGAAGACATC
GCATGTACGT-ACCTTTTTTTTTGCAGGGATCGCATGTACGTACCTGATTGTGATCGAGTACGTGTCGGTCTCTGCTACG
TACGTTCGTCGGCCCT------CTTTAAATAC-GGGTGCACTACGATTGCCCTGAATCAAACCGATCGATCCAAGCTCAC
GATCGAGG---AAGATCGACTCGCGCGATT-CGACGAGAGAAGAGATCAAGCAAGAAGGAACCATGGCTGCGACGCCGGC
GGACGCAAGCAGCAGCAGCAGC------GAGGCCGTGGTGGGCGGCGAGAAGAGCAACAAGATGATCACGCTGATCAGCT
CCGACGGCGAGAGCTTCGAAGCCACGGAGGAGGCGGCGAAGATGTCGGTGACCATCAAGCACATGATCGAGGACGGCTGC
GCCGACGACGGGATCCCCCTCCCCAACGTCCCCGCCAAGATCCTCTCCATGGTCATCGAGTACTGCAACAAGCACGCCGC
CGACGCCG------ACGACACTAACAAGCACGTCGCCGACCCCGCCGACGCCGACGAGGACGACGACAATAACAACAACA
ACGCCAGCGCCGGCGAGAAGGATGACCTGAAGAGCTTCGACGCCAGCTTGGTCGCCGTCGACCAGGCCACGCTGTTCGAC
ATCATCCTCGCCGCCAACTTTCTGAGCATCAAGGGGCTCCTGGACCTCGCCTGCCAGAAGGTGGCCGACGACATCAAGGA
CAAGTCGGTTGAGGAGGTGCGCGAGATTTTCAAGATCGAAAACGACTTCACCAAGGAAGAGGAGGAGGCCGTCAGAAAGG
AAAACGCCTGGGCCTTCAACGAGTAGAGACGTCCTAGATACAACAATA----------------TTTCATCCTTGCGGCT
GCTTAA--------TTAATTCGTCGTTTTTCTTGTTTACGAGTTT-AGCTAGTTTACTTGGTTTTTGACCGATGGAAACT
TTGTATTTCGGATATATATTTCGTCGAAAAATACTATGTTTGAACTATTGAAAGCAGGCTCTGAGTATTGTAGTATTTTT
TTTGTGTGTTCGTTGGAGTTGGATAGCAATTTTCAATCGAAACTGCTTCACAGACGACTCTTCTCGCACGACCTCCGAAC
GATGCTGCCTCCCCAACTGCGCTCCTGCATGCACTCTTGCTGCTTGCGCTGCCACGTACGAATCGTGCGGGCATCGGCCG
CGCATTCGTCGTGTGTATAGCAGCGCTGATTTTCAATCTGAAGCAGAGTCTGGTCGGAGTCTGAGTTGGATAGCAATTTT
CGACTATGTTTGGAATATCGAAAGCAGAGTCTATGTTTGCAAATCGTGTGCCGTCTTCGGCCCCTGCGTCGCTCCTGTCG
GGGCGACTCGGGCGGCTCCAAACCCTAGTACACTGCCGACCTCTCTCCCGATCTTACTGCCACCATGATGAGGCTCTGGA
TAGAGTTGGCAGTGCTGGGTTGTGGTGTCAAGTGCTCGGATGGTCTCCGTCGGTCTACCTTGTGGGTTGTTGCTTAGGTT
GCAGAATCCGGGTGACGGTCGAACTACAGGTGGTCGGGTTCTTGAGATCAAGAAAACCCTTGGCAGGCGATGGCAGATAC
AATGACGCCGCGGGCGTCGTCCACCTCCTTGGAGGCCTCATTCAGGTATCTTATACCACCCATCCTCCCATGCATATATG
TGCAAACTATGGTAGTTGAGTTGGGATGTGCTGATGGCCGGTTTGTTGTCGAGCTTCGGTTGTGTTATACGTGGCAGTCA
TGGCGGGCTCTGGACACCCGTGTTCCTGTCCTTTTGAGGCCAATATGTCCGTTGTGCATCGCCTTTGACACGGGATTCCG
ACAAGTATCGT
>chr5B_1
TTTCACCATAAACAACGAGGTGGGGGGTGGTTTAGAAAAATGAGGGTTATCACATGGTTTGGAAAAAAAA-CGATGAGAA
GGGCATATATTGATGGGAAAGGTGGAAGCGATGAAATTGAAACCAACAAAACTCCATTTTAACGATAGAAGATTACAAAT
ATGTAAATAGTTTTAAGGGCAGCGCTACCCATCGGCCGATAAATAATTAAAAAAGATCCGCCGTCTCGCTGACCATTGGA
TGAACACGCTAATCGTCGTTCGATGTG-------CCCATGTGATCAGCCATCTCTTTGCAACAAGAGTCATGTTGCGGTA
TTTTCTGCAACAGATTTCTTGTTGCACAAAATTTCAGCAACAGAGGTCTTGTTGCAGAAATTTTCCGTAACATAGCTCTT
GTTACAGAAATTTCTCACAACAAGGACATGTTGCAGAAAAAAAAAATCAAGGATACTTTTTTTGGGAGGCTGAAAGAGGG
TTGTTTTGCAATAAGAAGCTTGTTGCAACTGTAACATGCGCTTTGTTGCAAAACCAAAACCGCCCTCCGAGGCGCGTCAG
TCTGCTTCTCAGGCCATGTGGCGCGCAACCAAGGCAGCGGACATGGGCGTGATAATCTGCCGGCTGATTCTAATCGTTTT
CCTAATTTATTTAAAAGGTATATAATTGGCCAATTTTGATCAGGTAAATATCCCATACTCTTGAATTTCCCAGAGTAGTC
ATGAGCGTGCCCAGTAAGAGTTCGATCGAAACTCGACGCAAAGAAAAAACGAGAGAGTCGGATCAAAACACGAAGACATC
GCATGTACGT-ACCT-------------------------------GATTGTGATCGAGTACGTGTCTGTCTCTGCTACG
TACGTTCGTCCCGTCTCCGGCCCTTTTATATAAGGTGCACGTACGATTGCCCTGAACCAAACCGATCGATCCAGGCTTTT
GCGAGCGCACAAAGATCGACTCACGCGATT-CTACGAGAGAAGAGATCGAGCAAGCAGGAACCATGGCTGCGACGCCGGC
GGACGCAAGCAGCAGCAGCAGCAGCAGCGAGGCCGTGGTGGGCGGCGAGAAGAGCAACAAGATGATCACGCTGATCAGCT
CCGACGGCGAGAGCTTCGAAGCCACGGAGGAGGCGGCGAAGATGTCGGTGACCATCAAGCACATGATCGAGGACGGCTGC
GCCGACGACGGGATCCCCCTCCCCAACGTCCCCGCCAAGATCCTCTCCATGGTCATCGAGTACTGCAACAAGCACGCCGC
CGACGCCGCCGCCGACGACACCAACAAGCACGTCGCCGACCCCGCCGACGCCGACGAGGACGACGACAATAACAACAACA
ATGCCAGCGCCGGCGAGAAGGAGGACCTGAAGAGCTTCGACGCCAGCTTGGTCGCCGTCGACCAGGCCATGCTGTTCGAC
ATCATCCTCGCCGCCAACTTTCTGAGCATCAAGGGGCTCCTGGACCTCGCCTGCCAGAAGGTGGCCGACGACATCAAGGA
CAAGTCGGTTGAGGAGGTGCGCGAGATTTTCAAGATCGAAAACGACTTCACAAAGGAGGAGGAGGAGGCCGTCAGAAAGG
AAAATGCCTGGGCCTTCAACGAGTAGAAACGTTTACGAGTTTTAGCTAGTGTACTCACTTGGGGTTTCATCTTTGCAGCT
GCTTAATTAATTTGTTAATTCGTCGCCTTTCTTGTTTACGAGTTTTAGCTAGTGTGCTTGGTTTTTGATTGGTGGAAACT
TTGTGTATCAGATATATATTTCGTCAAAAA-TACTATGTTTGAAATATTGAAATCTGAGTCTGAGTTTTGTATTATTTTT
TTAGTTTGTTTGTTTGAGTTGGATAGCAATTTT-----------------------------------------------
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>chr5A_1
TTTCATCATAAACAACGAGGTGGGGGCCGGTTTAAAAAAATGAGGGTTATCACGTGGTTTGGAAAAAAGGTTGATGAGAA
GGGCATATATTGATGGGAAAGGTGGAAGTGATGAAATCGAAACCAACAAA-CTCCACTTTAATGATAGATGATTATAAAT
ATGTAAATAGTTTTAAGGGCAACGGTATCCGTCGACCAACGAATAATTAAAAAAGATCTGTCGTCTCGCTGATCATTGGA
TGAGCACGCTAATGATCGTTCGATGTG-------CCCACGTGATCAGCCATCCCTTCTCAACAAGAGTCATGTTGCAGTA
TTTTCTGCAACAAATTTCTTGTTGCACAAGATTTCTGCAATAGAGGTCTTGTTGCAGAAATTTTCCATAAGAGC------
-TTATAGAATTTTTTTACATCTAAGACATGATGCAGAA-GAAAAAATCGACGATACTTTTGGCT---GGTTGAAAAAGGG
CTGTTTTGCAATAAGAGGCTTGTTACAGTTGCAACATGCGCTTTGTTGCAAAATCAAAACCGCCCTCCGAGGCGCGTCAG
TCTGCTTCGCAGGCCATGTGGCGCCCAACCCAGGAAGCGGACATGGGCGTGATAATCCGCCGGCTGATTCTAATTGTTTT
CCTAATTTATTTAAAAGGTACTAT--------------ATAAGGTATATATTCCATACTCTTGAATCTCCCAGAGTGATC
ATGAGCGTGCCAAGTAAGAGTTCGATCGAAACTCAACGCGAAAAAC------GAGAGTCGGATCAAAACACAAAGGCATC
GCATGTACGTTACCT-------------------------------GATTGTGATCTTGTACGTGTCGATCTCTGCTAGG
TACGTTCGTCCCGTCTCCGGCCCTTTAAATAC-GGTGCACGTACGACTGCCCTGAACCAAACCGATCGATCCAGGCTTTT
ACGATCGCACAAAGATCGACACACGCGATTTCGACGAGAGAAGAGGCCGAGCAAGCAGGAACCATGGCTGCGACGGCGGC
GGACGCAAGCAGCAGCAGTAGCATTAGCGAGGCCGTGGTG---GGCGAGAAGAGCAACAAGATGATCACGCTGATCAGCT
GCGACGGCGAGAGCTTCGAAGTCACGGAGGAGGCGGCGAAGATGTCGGTGACCATCAAGCACATGATCGAGGACGGGTGC
GTCGA---------------------------------------------------------------------------
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>chr5D_994
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--------------------------------------------------------AGGAACCATGGCTTCGACGGCGGC
GGACGCAAGCAGCAGCGGCGAGGTGGCTGCCA------TG---GGCGACAAGAGCAACAAGATGTTCACGCTGATCAGCT
CCGACGGCGAGAGCTTCGAGGTCACGGAGGAGGTGGGCAAGATGTCGCAGACCATCAAGCACATGATCGAGGACGGCTGC
GCCGACAACGGGATCCCCCTCCCCAACGTCCCCGCCAAGACCCTCAGCAAGGTCATCGAGTACTGCAACAAGCACGT---
------------------------------CGTCGCCGCCGCCGCCGGCGACGACG------------------ACAACA
ACGCCAGCGCCGGCGAGAAGGAGGACCTGAAGAGCTTCGACGCCAAGTTCATCGCCGTGGACCAGGCGACGCTGTTCGAC
CTCATCCTCGCCGCCAACTACCTGGACGTCAAGGGGCTCCTGGACCTGAGCTGCCAGACGGCGGCCGACATGGTCAAGGG
CCAGCCGGTCGAGGGCATACGCAAGATGTTCAACCTCGAGAACGACTTCACGCCGGAGGAGGAGGCGGAGATCAGAAGGG
AGAACCCCTGGGCGTT----------------------------------------------------------------
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>SNPs
-----------------------------------------S-------------------S------------------
---------S----------------------------S------------------------------S----------
-----------------------------S-----------------------------S--------------------
-------S------------------SSSSSSSS------------S----------S----------------------
---------------------S-------------S------S------------------------------S------
S---------S-------------------------S----------S------------S--------------S----
------------------------------------------S------------------S-----S------------
-------------------------S----------------------S----------------------S--------
----------------------------------------------------------------------S---------
-----------------S--------------------------------------------------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
----------SSSS---------------------SSSSSS---------------S----------------S---SSS
-SSS-S-S--------------S-------------------------S------S------------------------
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---------------------S----------------------------------------------------------
----------------------S---------------------------------------------------------
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---------------------------------------------------S-----S----------------------
---------------------------S----SSSS--SSSSSSSS-------------------------S----S---
-------------------------SS--------------------------S-S------------SS-S--------
----S-S--S---------------S----S-------------S--------S-S-SS-------S-----S-------
--S--S----S---S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_962
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--------------------------------------------------------------CGATCGATCCAAGCTCAC
GA------------------------------------------------------------------------------
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>reverse_2369
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------------------------------------------------CAAGAAAACCCTTGGCAGGC------------
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