>input_sequence_74912
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ATGAAGCGCAAACAAGAGCGTAACCGCAAGAGCTTGGT
TGTAGCGCTCAACACATATGCCAAGCGAAACAATATGCAGGCATGTCCAAAA---ATATCATAATCAAAATATTTATGTT
TCCTTCCATTCCTCTTAGCCACCGTATATATTAATAAGTGCTCGACTGTTG-----------------------------
-TTATATTTCAGATTACTGACTTGGAATTTGTGGAAGAGAAAGAAAGGAATCTAGTTGGTGGAGTTGCAGCAGGATATGT
GCATTCCAACTTTGTTGCAAAAGGTGTGGATGGCAGGCCCACTTTGTTCTTTGCTGAGATGCTCCATGGTTGCTTCTTGC
AAGAGCATGTTATTCTCTGCACTCCTTTGGAAGATACGGACTCTGGTAACTATTTCGCTTTTGCTCTAATTGTCTTGACT
TTTTGTTAGCATATATACTAATATATACAGTACATA-TTTTTCTCGCGTGAAGGTTGTTGTTTTGGGTGCAATCAGCATG
CAAGGAAGCTCAGGCATCCCACATGTGGTGGCTACTTGGGTGGACTCGAGGATGTGCCGTTTCCTTACGTGGAGGAGGAC
AGTGATGATGATTGCCTTCTTGATTGA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>chr5A_1_TraesCS5A01G033100
AGTAGCCCGGTTTATTTACTACAGAATCCGGTTCGAATCCGTTGTTAGTCCCGTGCACCCCAGGCCCAGGCCTTTTCGGA
AAGCAGCAGGCAGACCGAGTTGAACTGGGCCGGCGTGGCTCTTCTTGTATACTCCTACTTATACAAGTCTTCCTCTTCCT
TGAGATAAGACCATATAATAAATTAAAAAGCAGGAAAGAAAAAGCCGGCAGAGGCGATTTGATCTCATCGCCGGCGATCT
CCTCTTTTCTTCGCCACGCACCCTTTCCCTGCATCTCCCCAGTTACAGGTAACGCCGCCCGTCCTTTTGATTTACAGCAT
CTCTCCAGTTACACAGGTGGATTCACCCGATGTGTGGCGTGGATTAGCCTAGCGTGCTGACACATCTAGTTAATTCCTGC
TGTTAATTATATATCTGATCTGATGCAGGAGCGGTAGATCCATCGGTGGCCATGTCGTCGATATATGGAGAAATTACCAT
GTACGTATGCAGACATTTTAATGCAACCTTTGTGACTATCGTGCCTGCATGTTTTGAACTTGTATACAGTATAAAAGAAA
GAATCGATAATATCAGAAGATGCATTCAAGAGATTGATGGACATATGGCATAAAGTGAATGCCAGTAGATTCAATTTTGG
TTGATTTTCACCAAACAAAATAAGCTTTACATTTTCGGACTGGAGGTGTTAAAACTCACACTAGTAGGTAGTATTTTGGT
GTAGTAATGTAGTACCTCCGTTCCTAAATGTAAGACGTTTTTGCAGTTCAAATTAAACAACCACGGAGTAATATATCAGC
TCAGGCAACCTGTGTCATTACAACTAATTGAGGTTACATACTAATTTGTCTTTTTTT-CATGCATGCAGTAACGACTTTG
ACACACTACAGACATTGGATGGTTCCGCTTTAAAAGAGTTTCATGAGTTCCAGGATTTTTGGCTTGCTTGCGCCGAGCGC
CACATGAGCCTGAGGCCCAAGTCACCGCCCCC-GAGGAGCTGATGAAGCGCAAACAAGAGCGTAACCGCAAGAGCTTGGT
TGTAGCGCTCAACACATATGCCAAGCGAAACAATATGCAGGCATGTCCAAAA---ATATCATAATCAAAATATTTATGTT
TCCTTCCATTCCTCTTAGCCACCGTATATATTAATAAGTGCTCGACTGTTG-----------------------------
-TTATATTTCAGATTACTGACTTGGAATTTGTGGAAGAGAAAGAAAGGAATCTAGTTGGTGGAGTTGCAGCAGGATATGT
GCATTCCAACTTTGTTGCAAAAGGTGTGGATGGCAGGCCCACTTTGTTCTTTGCTGAGATGCTCCATGGTTGCTTCTTGC
AAGAGCATGTTATTCTCTGCACTCCTTTGGAAGATACGGACTCTGGTAACTATTTCGCTTTTGCTCTAATTGTCTTGACT
TTTTGTTAGCATATATACTAATATATACAGTACATA-TTTTTCTCGCGTGAAGGTTGTTGTTTTGGGTGCAATCAGCATG
CAAGGAAGCTCAGGCATCCCACATGTGGTGGCTACTTGGGTGGACTCGAGGATGTGCCGTTTCCTTACGTGGAGGAGGAC
AGTGATGATGATTGCCTTCTTGATTGAATCTACAATATATGTTTCCAACAAGACAGAGCTGCAATATGCCGAGTGCGTAA
GGAGGAGTGCTTTGGTGACAGCAGGCTGTGACAAGTAGGGGCCCAAGCATATGTATCTTTATTAATAGTGTTATATAATA
ACTAGACTAGATGCCTCAAAAAAATCAAAAATAAAAATGTAATGTTGACTAGAATCATGCTTGTGACAATTTCGTTTGAT
GATTTGTGGTAATAAGTTAGAATGGAGGATGATGTATCATTATAAATTGTTGTTTTACTGTTTCTTTTTGACCTTGATAA
GTGCCATTCGTGTGGCACGAACACATGACAACTCTGAACGTTTTGATGACAAGTTTAGTGACGCGAGGATGACTACTTTA
GTTGTCAAGCATGACAAATTTCTTTTCAGATGGCAAGTTTCAGTATTTTTTGGGTTTTTTGGATGACAAGTTTAGTTGTA
AAAAACGTTAGGGCTGAAATGCTTCATGCCACGCACATGTGTTGTATTTATCATTTGTATTTTTTTTTTGAGAGCGTGCC
ATGTTTTTATAGCAAGAAGATAGTATTTGTTTACAAGGGACGGCAGAACAATCACAGGCTATGGTGCCCGCCGGCCGCCG
GTCCGTGCGAGCCGTCGCACCTGTGGGAGTAGAGAAGCCCCCAGATTGGGCATGGCAGCTTACAGGGACACCGCGTCGCC
CGAGCCCCCCACCCACGCTGCACTGACCACCAGCCCCTGGTCTTGAGCAAAGATTGACAAACGCTGAGCACCAAAGTTCT
TGTTAGTGGTGTTCCTGGGAGGAGGATCCAAGTGAAGGCTCCATGTGCACAAGACCAAACAAATTCTATCAACAAGACTA
CCCATGTGAAATTCAAGTCCTTGTCTATCTTTGTTCCATTGTCTGCTATATATGCCAACTAGTAGTGCATGGTTTGCAGA
TCATATCAAGTAAATGCAGGCACTATAATCTTTATATGGACAATGAAATCCAAGTGATAATTCAAAT
>chr4B_811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TGTGTCATTAGAACTA-TTGAGTTCACATCCTAATTTGTATCTGTCTCCATGCATGCAGTAACGACTATG
CCGGACTGCAGACATTGGATGATTCCGCTTCAAAGGAGTTTCAGGAGTTCCAGGATTTCTGGCTTGCTTGCGCCCAGCGC
CAAATGAGCCTCAGGCCCGCGTCGCCGTCCCATGAGCAGCTGATGAAGCGCAAACAAGAGCGTAATCGCAAGAGTTTGAT
TATAGCGCTCAACACATATGCCAAGCAAAATAATATGCAGGCATGCCCAAAATATATATCATAATCAAAACATTTATGTT
TCCTTGCATTTCGCTTTGCCGCCGTATATGTTAGCGAGTGCTCGACTTATTCTAGAATGAGACTCTTCTTACACGTGTAG
TTTGTATTTCAGATTAATGATTTTGAGTTTGTGGAAGAGAAAGAAAGGAATCTGGTTTCTGGAATGCTTGGAGGATATGT
GCATTCCAACTTTGTGGTGAAAGGTGTAGATGGCAGACCAACTTTGTTCTTTGCTGAGATGGAGCATGACTGCTTCCAGG
AAGAACATGTTGTTCTCTGCACTCCGTTGGAAGACAAGGACTCTGGTAACTATTTCGCTTTCGCCCTAGTTTTCTTGACT
TTTTGTTAGCATCTC--CTAACATATACTACATATTTTTTTTCTCACATGAAGGTTGTTGTTTCGGGTGCAATAAGCGAG
CAAGAAAGCTCAGGCACCCCACATGCGGTGGCTACTTGGGTGGACTCGAGGATGTGCCGTTTCCTTACGTGGAGGAGGAT
AGTGATGATGAGTGCTTTCTTGAATGAGTCTAT-ATATATGTTTCCAACAAGACAGAGCTGCAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS----------S-----S-----S-S----S---------S-S-S-S---------------------S--
S-SS---S-------------S--------S---S--------S--------------S---------------S-----
--S--------S------SS---S---S---S----S----------------------------S--------S---S-
-S------------------------S---S--------------S------------------------S---------
-----S----S-S---S---S--------S---SSS-----------SS-S-----------------------------
---S------------S---S--S--S--------------------------S---SS----S-SSSS-S---------
---------------S-SS--------S--------S--S---------------------SSS----SS------SS-S
----S------S-------------S--------S-S------------------------S--S---S--S--------
------------S-SSS----S------SSS-S--S---------S-S---------------S---------S---SS-
----S-----------S--------S-----------------------------------------------------S
-----------S---S-------S---S----SS------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_464
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GGTGGCCATGTCGTCGATAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>reverse_2266
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GGAGTAGAGAAGCCCCCAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
