>input_sequence_74897
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-----------------------ATGGCGGACATACGGTGCGACCAGGCCAAGATGACGCC---AAGCCCGTCGCCCCTC
AGGATCTTCGGCTACGACGTGCCCGGCGGCGCCACCGACGCCA---CCGTCGTGCTGACTCCGCCGCCGACGCCGCCTGC
CGACCCGCGGAGGTTCGGGTGCCAGTACTGCTCTCGCGAGTTCGCCAACTCGCAGGCGCTGGGCGGGCATCAGAACGCGC
ACAAAAAGGAGCGGCAGCAGCTGAAGCGCGCGCGCCTGCACGTCGACGCCAGGATGAGCTACTTCGCGCCGCCGCCCGGG
CACCTGATCGCCGTGGGACACGCAGGGTCGTCGGCCTACACGCGGGACGCCTTCCACCGATGGGTCTACCTCGCGCACCA
GTCAGCGGCGGGCCTGCCGTTCCATGCTCTGCCAGCCGGTGGTGGGTGCCAAGCCGAGCCGCGGCTGCTCGAGGACCCAA
G---GGACTGCGGCAGCGCCGCCATCAGCACCAGCAGTGGTGCTCGTGCCTGCACTCCAGCGGATGACAGCACCGAGGAA
GCCTCGGCGATGGGGGTGGGGCTCGACCTCGATCTCAGACTTGCTCCGGCCACTTCATCATGA-----------------
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>chr3B_1_TraesCS3B01G405300
TCTATCCAACACCATTATTCTGCTAACAATGTCGGCATCCTTCTCACATTGACAATGTTTATGATCTGAAAAACAGTATC
ATCAACAATACTTAGCTAGTATTAGAGATTACACTAGGGATCTATTTGATGTTTATTTTTCGCCCATGCAATTGAGTTTT
CCTCTGAATCTCACACTACAGAATTATTGTATTTGTAGCATAGAAATATAAACTTAATTATGGACATAAAAAAAATAAAA
AATGACCTTTATTAATGCCTCTAGGTCATATTTCCAACAGTGGGCGATTGAAAAAATGGATTTGACTCGATGTTTTGAGC
CTGGTGGCTAGCTGGGCTGTAGGAGGTTGTTGCTTTATCGTCCACACGGGATCGGATCAGGCTCTCACTTCTCTCTCCTA
ACTTGCTTACAACACACATTCTCTATCCCAGAGACTAATAGGAAGAAGCAAACCTATTCTTAACTTTTTTCTCTACCAAT
CTATT-CTGAAGTTCTTATATATAGTGAAAAAAATTCTTCTTGGTTGGTACTGAGTATTGACAAGAAGGGAAAGGTGCAG
GTAAGCTAATGGGTCTTTCCGTACGTCCTA--------------------------------------------------
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--------------------------------------------------CTTGCGCGAAACTCATGGAACCTTCATGTC
ACCATCTACAAACGACGCAATCGATAAAGATGTCATTCACACCCATACATCGAGCGGTACGAGAATGGCATCCCGGAGGG
CCAGCGTAGCGCACAAGCAGACGTACTTTGCCGTTCTAGAACGATGCTACTTTGATGTCTCATC-------TGGAAGCTT
TGGCGTTGCGTGTGACCATCTGCTCAATGTTCACTCACCTACCTCCAATCTTGCTCGGCAT-------------------
----------------GCGCATGTCCTCCGATTTCTTCCCGTCCCATGCATGACTCCATTTTCTCCGTGCAGGTGGGACT
TCCCTCCGCTCCCCGCGCGCTACATAATCTCTCACCTCGTGCGTCGCTAACACCTGAGCGCCTCAACACTTACGTGTCAC
CTAGCTAGCAAGCTAGATCATCCATGGCGGACATACGGTGCGACCAGGCCAAGATGACGCC---AAGCCCGTCGCCCCTC
AGGATCTTCGGCTACGACGTGCCCGGCGGCGCCACCGACGCCA---CCGTCGTGCTGACTCCGCCGCCGACGCCGCCTGC
CGACCCGCGGAGGTTCGGGTGCCAGTACTGCTCTCGCGAGTTCGCCAACTCGCAGGCGCTGGGCGGGCATCAGAACGCGC
ACAAAAAGGAGCGGCAGCAGCTGAAGCGCGCGCGCCTGCACGTCGACGCCAGGATGAGCTACTTCGCGCCGCCGCCCGGG
CACCTGATCGCCGTGGGACACGCAGGGTCGTCGGCCTACACGCGGGACGCCTTCCACCGATGGGTCTACCTCGCGCACCA
GTCAGCGGCGGGCCTGCCGTTCCATGCTCTGCCAGCCGGTGGTGGGTGCCAAGCCGAGCCGCGGCTGCTCGAGGACCCAA
G---GGACTGCGGCAGCGCCGCCATCAGCACCAGCAGTGGTGCTCGTGCCTGCACTCCAGCGGATGACAGCACCGAGGAA
GCCTCGGCGATGGGGGTGGGGCTCGACCTCGATCTCAGACTTGCTCCGGCCACTTCATCATGAAATTGGATAAATCCATC
CTCACATGCATGAGTTAACCATGTAATGTAACGAGTTGTCAAGTCCCATCTTCCAAGGCTTATGACCATGTCACTTCTTT
CGTTCTCTTGGGAATCCTATTAATCGTTGTCCATTCATTCGGACTTTCATGCGAAGAAATGACCGGTGAATATACATGAT
AATAATATCTGAAAAATCGTTTAAG-AATTAAATACATCTCAAATATTCTTTCCAGATCATATCATATTGAATATATATA
ACCATTT--CATTTGAATTAAGCCATAAGTAAATCGTGATGACATTGTTAACAATATCCATCTCATGTTTTGTAAGCTAT
TATATTTGAGCACATACTAGGCATAGAACAAGAACTGAACTTGGAACCAAAGATTACCCAATATTTAAATTAATCCATAA
GAAAAGGAGGTTAGGTTTCCCACTTCAGTGTAACTAT--------------TGGACTTGAAACCAATTTTTTC-ACTCAA
GTTGGTGCGAACCGACTGATGCAGATTGCACATAGTATGGTGCAACCAATTCAGATGGCTTTCATGCAGGGCAGACACAT
ACTAGTGGGTGTTGTCGTCGTACATGAAACACTACATGAAATGCACTCAAAAAAACTGGATGGGTTGGTTTTCGAAGTAG
ACTTCGAGAAGGCGTATGATAAGGTTAAATGACCCTTCCTCCAACATGCCTTACATATGAAGGGATTCGACGATTCCTTG
AGGAAACAAGTCGAGTCGTTTGTGCAAAAATGCAACGTAGGGATTAAAGTGAATGATGACACATGTCATTCTTTCCAGAA
GCAAAAGGGCCTAAGACAGGGAGACCTGATGTATCCTATCTTGTTCAACGTAGTGGCAGATATGCTGAGAATTCTTATTG
GTAGGGCCAAAGAGGACGGGCACGTAGGCGGACTCG-ACCCCATCTTGTGGATGG-GGTGGAGGGGTATCCATACCACAA
TACACTGACGACACTATTATTTTCATGGAACATGATTTGGCAA
>chr3A_427
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--------------------------CCCATAGACTAATAGAGAGAAGCAAACCTATTCTTAACTTTTTTCTCTACCAAT
CTATTTCTGAAGTTCTTATATAAAGTG-AAAAAATTCTCCTTGGTTGGTACTGAGTATTGACAAGAAGGGAAAGGTGCAG
GTAAGCTAATGGGTCTTTCCGTACGTCCTA--------------------------------------------------
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--------------------------------------------------CTTGCGCGGAACTCATGGAACCTTCATGTC
ACCATCTACAAACGACACAATCGATAAAGATGTCATTCACACCCATACATCGAGCGGTACGAGAATGGCATCCCGGAGGG
CCAGCGTAGCGCACAAGCAGACGCACTTTGCCGTTCTAGAACGATGCTACTTTGATATCTCATCTGGAAGGTGGAAGCTT
TGGCGTTGCGTGTGACCATCTGCTCAATGTTCACTCACCTACCTCCAATCTTGCTAGGCAT-------------------
----------------GC--ATGCCCTCCGATTTCTTCCCGTCCCATGCATGACTCCATTTTCTCCGAGCAGGTGCGACT
TCCCTCCGCTCCCCGCGCGCTACATAATCTCTCACCTCGTGCATCGCTGACACTTGAGCACCTCAACACTTACGTGTTAC
CTAGCAAGCTAGCTAGATCATCCATGGCGGACATACGGTGCGACCAGCCCAAGATGACGCCAGCAAGCCCGTCGTCCCTA
AGGATCTTCGGCTACGACGTGCCCGGCGGCGCCACCGACGCCGCTGCCGCCGTGCTGACTCCGCCGCCGACGCCGCCGGC
CGACGCGCGGAGGTTCGGGTGCCAGTACTGCTCTCGCGAGTTCGCCAACTCGCAGGCGCTGGGCGGGCATCAGAACGCGC
ACAAGAAGGAGCGGCAGCAGCTGAAGCGCGCGCGCCTGCACGTGGACGCCAGGATGAGCTACTTCGCGCCGCCGCCGGGG
CACCTGATCGCCGTGGGACACGCAGGGTCGTCGGCCTACACGCGGGACGCCTTCCACAGATGGGTCTACTTCGCGCACCA
GTCAGCGGCGGGCCTGCCGTTCCATGCTCTGCCGGCCGGTGGTGGGTGCCACGCCCAGCCGCGGCTGCTCCAGGAACCAA
AGGAGGACTGCGGCAGTGCCGCCATCAGCACCAGCAGTGGTGCTCGTGCCTGCACTCCAGCGGATGACAGCACCGAGGAA
GCCTCGGCGATGGGGGTGGGGCTCGACCTCGATCTCAGACTTGCTCCGGCCACGTCATCGTGAAATTGGATAAATCCATC
CTCACATGCATGAGTTAACCATGTAATGTAACAAGTTGTCAAGTCCCATCTTCCAAAGTTTATGACCACGTCACTTCTTT
CGTTCTCTTGGGAATCCTATTACTCGTTGTCCATTCATTCGGACTTTCATGCGAAGAAATGATCGATGGGTATACATGAT
GATCATATCTGAAAAATCGTTTAAGAAATTAAATACATCTCAAATATTCTTTCCGGATCATATCATATTGAATATAT-TA
ACCATTTTTCAATTGAATTAATCCATAAGTAAATCGTGATAACATTGTTAACAGTAT-----------------------
----------------------------------------TTGGAACCAAAGATTGCCCAGTATTTAAATTAATCCATAA
GAAAAGGAGG----------------------------------------------------------------------
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>chr3D_428
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---------------------------CCAGAGACTAATAGAAAGAAGCAAACCTATTCTTAACTTTTTCCTCTACCAAT
CTATT-ATGAAGTTCTTATATACAATGAAAAAAATTCTTCTTGGTTGGTACTGAGTGTTGACAAGAAGGGAAAGGTGCAG
GTAAGCTAATAGGCCTTTCCGTACGGAAAATACACTTTGGTTCCTGGTTGTATATGCATCTTATATGGGGATTTTTTTAA
ATATTTTAATAAAAAGTCAAAATAGGTAAGAACTATTTTGACAAAACACTTGACTTACTTTTGCACTGATATATAAATCT
CGACGAAAAAAAAACAAAAGTTGACCTCACAGCAAAAAAGACAAAATTTATTTGCTATTATAAGTCACTATTCACACTAT
TTTAGCCAAAAATTTGTCTGTTTTGAAAAGAAGACAAAAGGATATATTTTTTTGTGGATTTTATTTCTCACGAGTACAAT
AGAAGGTCAAGTTTATTTTAAAAATATTTTCAGGAATTTTTGACCTTTTATTGAATTACTAATTTTTTCCCATATAGGAT
GCATATGTCCCCATACACCAAAAATTCCCCTCCCTTTCCGTACGTCCTACCTTGCGCGGAACTCATGGAACCTTCATGTC
ACCATCTACAAACGACACAATCGATAAAGATGTCATTCACACCCATACATCGAGCGGTACGAGAATGGCATCCCGGAGGG
CCAGCGTAGCGCACAAGCAGACGTACTTTGCCGTTCTAGAACGATGCTACTTTGATGTCTCATCTGGAAGGTGGAAGCTT
TGGCGTTGCGTGTGACCATCTGCTCAATGTTCACTCACCTACCTCCAATCTTGCTAGGCCGTTCTAGTACTGTCATCCGC
TGGAGTGCAGGCACGAGC--ATGTCCTCCGATTTCTTCCCGTCCCATGCATGACTCCGTTTTCTCCGTGCAGGTGCGACT
TCCCTCTGCTCCCCGCGCGCTACATAATCTCTCACCTCATGCGTCGCTAACACTTGAGCACTTCAACACTTACGTGTCAC
CTAGCAAGCGCGC----TCATCCATGGCGGACATACGGTGCGACCAGCCCAAGATGACGCCAGCAAGCCCGTCGTCCCTA
AGGATCTTCGGCTACGACGTGCCCGGCGGCGCCACCGACGCCGCTGCCGCCGTGCTGACTCCGCCGCCGACGCCGCCGGC
CGACGCGCGGAGGTTCGGGTGCCAGTACTGCTCTCGCGAGTTCGCCAACTCGCAGGCGCTGGGCGGGCATCAGAACGCGC
ACAAAAAGGAGCGGCAGCAGCTGAAGCGCGCGCGCCTGCAGGTCGACGCCAGGATGAGCTACTTCGCGCCGCCGCCGGGG
CACCTGATCGCCGTGGGACACGCAGGGTCGTCGGCCTACACGCGGGACGCCTTCCACAGATGGGTCTACCTCGCGCACCA
GTCAGCGGCGGGCTTGCCCTTCCATGCTCTGCCAGCCGGTGGTGGGTGCCACGCCGAGCCGCGGCTGCTCCAGGACCCAA
G---GGACTGCGGCAGCGCCGCCATCAGCACCAGCAGTGGTGCTCGTGCCTGCACTCCAGCGGATGACAGTACCGAGGAA
GCCTCCGCGATGGGGGTGGGGCTCGACCTCGATCTCAGACTTGCTCCGGCCACTTCATCGTGAAATTGGATAACTCCATC
TTCACATGCATGAGTTAACCATATAATGTAACGAGTTGTCAAGTCCCATCCTCCAAGGCTTATGACCATGTCACTTCTGC
CGTTCTCTTGGGAATCATATTTCTCCTTTTTCATTCATTCGGACTTTCATGCGAAGAAATGACCGATGGATATACATGAT
AATAATATCTGGAAAATCGTTTAAG-AATTAAATACATCTCAAATATTCTTTCCAGATCATATCATATTGAATATATATA
ACCATTTT-CATTTGAATTAATCCATAAGTAAATCGTGCTGACATTGTTGACAATATTCATCTCATGTTTTGTAAGCTAA
TATATTTGAGCACATACTAGGCATAGAACAAGAACTGAACTTGGAACCAAAGATTACCCAATATTTAAATTAATCCATAA
GAAAAGGAGGTTAGATTTCCCACTTCATTGTAACTACTGAAAAAAAACTACTGGACTTGAAACCAATTTTTTTTACTAAA
GTTGGTATGAACCGACTGATGCAGATTGCACATAGTATGGTGCAACCAATTCAGATGGCTTTCATGCAGGGCAGACACAT
ACTAGTGGGTGTTGTCGTCCTACATGAAACACTACATGAAATGCACTCGAAAAAACTGGATGGGTTGGTTTTCAAAGTAG
ACTTTGAGAAGGCATATGATAAGG--------------------------------------------------------
-----ACAGGCCGAGTCATTTGTGCAAAAAGGCAGCGTAGGGTTTAAAGTGAATGATGACACATGCCATTCTTTCCAGAC
GCAAAAGGGCGTAAGACAGGGATACCCGATGTCTCCTATCTTGTTCAACATAGTGGTAGATATGTTGAGAATTCTTATTG
GTAGGGCCAAAGAGGATGGGCACGTAGGCGGACTCGTACCCCATCTTGTGGACGG-GG-GGAGGGGTGTCCATACCCCAA
TACGCTGACAACGTTGTTATTTTCATGGAACATGATTTGGCAA
>chr6B_2056
AA------------------------------------------------------------------------------
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--------------------------------------------------------------------TTTTTTACTAAA
GTTGGTACGAATAGGCTGACGGGAATTGCACATAGTGTGGCACAACCAACTCAGATGGCTTTCATGCCGGGCAAACACAT
ACTAGATGGTGTTGTTGTCCTACATGAGACATTACATGAAATCCACTCGAAGAAACTGGATAGGGCTGTCTTCAAAGTAG
ACTTCGAGAAGGCGTATGACAAGGTTAAATGGTCGTTCCGCCAACATGATTTATGTATGAAGGGCTTTGACAATTCCCGG
AGGAAGCAAGTCGAGTCCTTTATTCAAAAAGT-AGCGTCGGGAG----GTAAATGATGACATAGGTCATTACTTCTAGAT
GCAAAAGGGCCTGAGACAAGGGGATCCGATGTCTACTATTTTGTTCAACCTAGTGTCAGATATGTTGACAATCCTTATCG
GTCGGGCCAAAGAGGACGGGAAAGTAGGAGGACTCGTACCCCAACTTGTGGATAGTGG-T-----GCTTCCATACTACAA
TACGCTGACAACAAAATTATTTTCATGGAACATGATTTGGCAA
>chr3B_2058
TTTT----------------------------------------------------------------------------
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-----------------------------------------------------------------------TTTACTAAA
GTTGGGACAAACCGATGGACGTCGATTGCACATTTA---GTGCAACCAACCCAGACGGCTATCATGCCGGGCAAAAACAT
-CTAGAGGGCGTGGTTGTCCTACATGAAACACTTCACGAGATCCACTCGAAGAAACTGGATGGGGTGGTCTTCAAAGTGG
ATTTTGAAAAAGCGTATGATAAAGTTAAATGGTCGTTCCTACAGTAGGCCATACGTATGAAGGGGTTCGATGATTCTTGG
AGGAAGCAGGTCGATTCATTTGTACAAAAAGGCAGTGTCGGGATTAAAGTGAATGATGACATAGGTCACTACTTCCAGAC
GCATAAGGGTCTAACAGAGAGGGACCCGATGTCTCCTATCTTGTTCAACAAAGTAGCGGATATGTTGGCAATTTTGATAG
GAAGAGCTAAAGAGGAAAACCAAGTAGGAGGACTAGTGCCACATCTAGTAGAGGATGG-G-----GTGCCCATACTAAAA
TACGCTGATGATACCATTATTTTCATGGAACATGATTTGGCAA
>chr2D_2058
TTTTG---------------------------------------------------------------------------
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-------------------------------------------------------------------------TACTAAA
GTTGGGACAAACCGACTGATGCAGATTGCACATAGTGTGGTTCAACGAACTCAAACGACATTCATGCCGGGCAGAAACAT
ACTAGAGGGTGTGGTTGTCCTACATGAAACACTTCACGAGATCCACTCAAAGAAACTGGACGGGGTAGTCTTTAAATTGG
ATTTCAAGAAAGCGTATGATAAAGTTAAATGGTCGTTCCTACAACAGGCTTTACATATGAAGGGATTCGACGATTCCTGG
AGGAAGCAGGTCGAATCATTTGTA-AAAGAGGCAGTGTCGGGATTACAGTGAATTATGACATAGGTCACTACTTTCAAAC
GCACAAGGGTCTAAGACAGGGGGACCCGATGTCTCCTATCTTGTTCACCATAGTAGCAGATAAGTTGGCAATTCTGATAG
AAAGAGCTAAAGAGGAAGGCCAAGTAGCAGGACTAGTACCACATCTAGTAGATGGTGG-G-----GTGTCCATACTACAA
TACACTAATGATACCATCATTTTCATGGAACATGATTTGGCAA
>chr4D_2069
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------------------------------------------------------------------------------AA
GTTGGTACGAACCGACTGACACGGATTGCACA--TA---GTGCAACCAACTCAGGCGGCTTTCATGCCGGGCAGACACAT
ACTAGAGGGCGTTGTCGTCCTACATGAAGCACT--ATGAAATCCACTCGAAAAAACTGGATGGGGTAGTTTTCAAAGTAG
ACTTCGAGAAGGCGTATGATAAGGTTAAATGACCCTTCCTCTAGCAGGCCTTACATATGAAGGGATTCGACAATTCCTGG
AGGAAACAAGTCAAGTCATTTGTGCAAAAAGGCAGCATAGGGATTAAAGTGAATGATGAAACATGTTATTATTTCCAGGC
GCAAAAGGACCTAAGACAGGGAGACTCAATGTCTCCTATCTTGTTCAACATAGTGGCGGATATGTTGACAATTCTTATTG
GTAGGGCCAAAGAGGATGGGCAAGTAGGCGGACTCGTACCCCATCTTGTGGATGG-GG-G-----TTGTTCATACTACAA
TACGCTGATGACAATATTATTTTCGTGGAACGTAATTTGGCAA
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---------------S--------------------------------------
----------------------S---------------------------------------------------------
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----------------------------------------------------------S---------------------
----------------S---------------------------------------------------------------
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-------------------------------------------------------S------------------------
------------------SS-------------------------------------------------------S----
-----------------------------------------------------S-----S--------------------
-----S---S-------------------------------------S--------------------------S----S
------------------------------------------S------S---------------------------S--
----S---------------------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------------------------------------------------S----------------------
---------------------------------------------------S------------------S---------
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-----------------------------------------------------------S--------------------
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----------------------S------------------------------------------S--S-----------
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---------------------S-----------------------------------S---------------------S
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--------------S------------S--------S-----------------------------------S----S--
------S-------------------------------------------------------------------------
-------------------S-----------------------------------------------------S------
------------------------------------------------------------------------------S-
-----------------S------------S---S--------------------------------------------S
--------------------------S-----S----------------S--------------S---------------
----------------------------------------------------------S--------S------------
-------------------------------------------
>forward_354
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--------------GGCTGTAGGAGGTTGTTGCT----------------------------------------------
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>reverse_2553
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------------------------------------------------------------------------CACTCAAG
TTGGTGCGAACC--------------------------------------------------------------------
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