>input_sequence_74888
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-------------ATGAAGGCCAAGGCTTCCACATTCTTCAAGCAGATGCTGTCCACCATCGTCGCCGTCGTCAAGGCCA
AGTCGACGGCGGTGCGCGCCAAGACGAGCACCTTGAAGACGCGCCTCCTCGTCCTCGGCATCCTCCGCAACAGGAAGCTC
CTCGTCAGCGCCATCAACCACAAGATCCACGCCATCATGGGCCAGGACGACCACGCGCGCAAGGAGGAGGCCGCCCAACA
AGACGACGGCGCCAACAAGGCCATCGTGCTCTACACGTCGCCCAGCTACGTGACGGAGCGCGACGTGGAGGAGGCCGCCG
CCGATGAGCAGGAGGAGGAGGAGGAGAGCGACGACGAGTACTTGACGCACTCGCTGTTCCGTGAGGAAGACGACGACGAC
GACGAGCTGGTGAACGCGCCGGGGTCGGTGATTGACGTGCTGCGCGACGCCATGGAGAAGGAGGGGGAGGGGGCTGAGTT
CCGGCTGGAGGACGAGATCGACCATGTCGCCGACGTCTTCATCCGCCGGATCCACAAGCAGCTCAAGCTGCAGAAGCTCG
AGTCCTTCAAGAGGTTCTGCGAGATGATGGAGAGGAGCGCTTGA------------------------------------
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>chr2A_1_TraesCS2A01G281900
ACTCTATAGTACTCCCTCTGTAAACTAATATAAAAGCGTTTAGATCACTGTTTTAATGATCTAAACACTTTTATATTAGT
TTACGGAGAGAGTACTACGTAAGAAGAAGAGCTGCTTAATCTATAGTTGTACTCGTGGCTCCCAGAATACTCACTTTTGA
GCTCCCCCTC-CGACGTTGAGTGTGGCACCGTCCCAGCTGAGATTTACCAAACACTTTTATTTGGCCCGCTACGGTATGG
TATGGTAAATCTCATGTGTTCTTTTTTCTTTTTC------TTTTTTGCGAGGAAATCTAATCTCATGTGTTGTTGATGGC
ATCACAATTTACAAACAGCCCCATCTCTCACTAGCTATAGCT-AGCAAGCGGAAACAAGCTGCCTACAATAATGTGAGTG
C----CT----CACAATGACCGCAATACCGCCAAAGTTAAAAGGCCACAAACTTGGTGGTACTAGTATAGGAGTATTCAT
GAATGAACACCTCACCATGAACTTTCTTACTACACACACATGGAAATAACTATTAAAAATAGGATAACCTCAAGCTTTTT
CTTTGAAAGGAAAGAACCCGCCCGCCCAGTTAGCCAAAACATTGGACAACTGTTACCCACGAGGAGCCCTTTGCATGCAT
GCATGCATACCCATCATC-TTTTTGACTACTTTTCCTTTTGCCCGCGGGCTGCTGCGGCACTTGTTAATTGCTA----CA
C--ACACACACACCCATCGCTTCCCCTTGGTGCCCTTTCCTTAGCTCACCTGCTTTCGTGCGATGCTGAAACTTGTCTAG
GAGACATCCACTCGCAATTGCTCACCCCCACCGTCTGCTACTGCTACTGCTAGTGCTATATATACCCATGGCATCCCACG
GGCAAAACTCCATGTCCAAGCATCAACTACACACACCTTGCGCTACTGTACAG------CCACCACAGTCCACGCAGCAA
GCA------------------TCCCCTCCGGCACCACATACACACCTTTA------TTTTGCAGGCTAGTTAGAGTAGTG
AACTGTAATCAAGATGAAGGCCAAGGCTTCCACATTCTTCAAGCAGATGCTGTCCACCATCGTCGCCGTCGTCAAGGCCA
AGTCGACGGCGGTGCGCGCCAAGACGAGCACCTTGAAGACGCGCCTCCTCGTCCTCGGCATCCTCCGCAACAGGAAGCTC
CTCGTCAGCGCCATCAACCACAAGATCCACGCCATCATGGGCCAGGACGACCACGCGCGCAAGGAGGAGGCCGCCCAACA
AGACGACGGCGCCAACAAGGCCATCGTGCTCTACACGTCGCCCAGCTACGTGACGGAGCGCGACGTGGAGGAGGCCGCCG
CCGATGAGCAGGAGGAGGAGGAGGAGAGCGACGACGAGTACTTGACGCACTCGCTGTTCCGTGAGGAAGACGACGACGAC
GACGAGCTGGTGAACGCGCCGGGGTCGGTGATTGACGTGCTGCGCGACGCCATGGAGAAGGAGGGGGAGGGGGCTGAGTT
CCGGCTGGAGGACGAGATCGACCATGTCGCCGACGTCTTCATCCGCCGGATCCACAAGCAGCTCAAGCTGCAGAAGCTCG
AGTCCTTCAAGAGGTTCTGCGAGATGATGGAGAGGAGCGCTTGATCCACCTCCATGGAATCAGATCCACCTCCAGTCCAG
TGATTTATTTATTCATAAGTATGCAATGGCGCCAGCTCCATCACTCCTTAAGCCAGGATTATGTTTAGCTTAATCGGAGG
CCCATGCATGTAA--AGAAGGAAAAGATGAAGCCGGGCAAGAAGATGCTTATCTTCTGCTAGGGTTTTAGTGGGGATGCC
AAGGTCTACTAGTCCTAC------GTGGTACTTTAATCATTATGTACTCATGTTCTTTTGTTCTTTAATCTGGGGGAAGA
TTGTAAAAGTGCTCAAGTTTTGAGGAAAAAAACAATAAATGAAGCAAATAAATAGACGGCATATATC-----AGCAAGCC
GAAATGTAACACGTACTGATCACAAATTCTTGAAGAACAAACACGGGTATTGCAGGCAACTGAACAAATTAGCTTCAACT
AAGATTTTCTTCTAATCCCCGAGAGTAGAACGCAACACGTACTAACATACAGTTCAAGCAGCCATAAGAAGAAAAGCAGA
ATCAAGCT--------CACATGACAAGGAAAAAGGGCTCGCTAGTTTTATGGATGGATGTCTCTGCTTTTGGCCAAGAAG
AGAAGAGCTAACGCATACCAGTAATCCGTAGGATCGGATCAGCTAGCGTCGTCGACGTTTTGCATTGCGGTGCGCCGGCA
TCCCCTCGGCCTC------CTCCAACTTGATGTCCTTGGCGAGGGAGACGGCCGCCACGTCCTCCATTGCCTCCTGCTCG
GTGAGACGCAGGGAGAATCTCACGGGCGGCGCCGGGGCATTCCGCTGCCTTGCCCGCCGCCGCGGCCTCTGTTCCCTATT
GGACTCCTGCCCGAGATACCTGGCGATCTCGGATCGTAATACCTCGGTGTCCATCGCCAACGCTGCCGCAACTCCTATGT
TGTAGATATCGCCCTCGCCGTTTGTGTCGCCGGAGGTTGAGGTGGATGACGATGAGGACGTGGAGGAGCCGATCGGATTG
TCCTGCGGTGCCGACGAAGAGATGTGTTCCC
>chr2D_96
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---------------TACGTACGAAGAAGAGCTGCTTAATCTATAGTCGTACTCGTGGTTCCCAGAATACGCACTTTTGA
GCTCCCCCTC-CGACGTTGAGTGTGGCACCGTCCCAGCTGAGATTTACCAAACACTTTAATTTGGCCCGCTAC-----GG
TATGGTAAATCTCATGTGTTCTTTTTTCTTTT-C------TTTTTTGCGAGGAAATCT-----C--------TTGACGGC
ATCACAATTTAC-AACAGCCCCGTCTCTCACTAGCTATAGCT-AGCAAGCGGAAACAAGCTGCCTACAATAATGTGAGTG
C----CTGACTCACAATGACCGCGATACCACCAAAGTTAAAAGGCCACAAACTTGGTAGTAGTAGTA------TATTCAT
GAATGAACACCTCACCATGAACTTTGTTACCACACAGACATGGAAATAACTATTAAAAATAGGATAACCTAAAGCTTTTT
CTTTGAAAGGAAAGAACCCGGCCGGCCGGTTAGCCAAAACATTGGACAACTGTTACCCACGAGGAGCCCTT----TGCAT
GCATGCATACCCATCATCTTTTTTGACTACTTTTCCTTTTGCCCGCGGGCTGC---GGCCTTTGTTAATTGTTACACACA
CGCACCCACACATCCATTGTTTCCCCATGGCGCCCTTTCCTTAGCTCACCTGCTTTCGTGCGATGCTGAAACTTCTCTAG
GAGACATCCACTCGCAATTGCTCACCCCCACCGTCTAA----TAC--------TGCTATATATACCCATGGCATCCCACG
GGCAAAACTCCATGTCCAAGCATCAACTACACACACCTTGCGCTACTGTACAAGTACAACCAACACAATCCACGCAGCAA
GCA------------------TCCCCTCCGGCACCACATACACACCTTTA------TTTTGCAAGCTAGTTAGACTAGTG
AACTATAATCAAGATGAAGACCAAGGCTTCGACATTCTTCAAGCAGATGCTGTCCACCATCGTGGCCGTGGTCAAGGCCA
AGTCCACGGCGGTGCGCGCCAAGACGAGCACCCTCAAGACGCGCCTCCTCGTCCTCGGCGTCCTCCGCAACAGGAAGCTC
CTCGTCAGCGCCATCAACCACAAGATCCACGCCATCATGGGCCAGGACGACCACGCGCGCAAGGAGGAGGCAGCCCAGGA
AGACGACGGAGGCAAGAAGGCCATCGTGCTCTACACGTCGCCCAGCTACGTGACGGAGCGCGACGTGGAGG---CCGCCG
CCG------AGGAGGAGGAGGAGGAGAGCGACGACGAGTACCTGACGCACTCGCTGTTCCGCGAGGAAGACGACGATGAC
GACGAGCTGGTGAACGCGCCGGGGTCGGTGATTGACGTGGTGCGCGACGCCAAGGAGAAGGAGGCGGAGGGGGCTGAGTT
CCGGCTGGAGGACGAGATCGACCATGTCGCCGACGTCTTCATCCGCCGGATCCACAAGCAGCTCAAGCTGCAGAAGCTCG
AGTCGTTCAAGAGGTTCTGCGAGATGATGGAGAGGAGCGCTTGATCCACATCCCTAGAATCAGATCCGCCTCCAGTCCAG
TGATTTATT-ATTCATAAGTATGCAATGGCGCCAGCTCCATCACTCCTTAAGCCAGGATTATGTTTAACTTAATCCGAGA
CCCATGCATGTAAGTAGAAGGAAAAGATAAATCCAGGCAAGAAGATGCTTATCTTCTGCTAGGGTTTTAGTGGGGATGCG
AAGGTCTACTA------C------GTGGTACTTTAATCATTACGTACTCCTGTTCTTTTGTTCTTTGATCTGGGGGAAGA
TTGTAAAAGTGCTCAAGTTTTGAGTGAAAAAACAATAAATGAAGCAAATAAATAGACGGCATATACTGTACTTCACGTCA
GTACG----------------------------------------------GCAGGCAACTGAACAAATTAGCTTCAACT
AATATTTTCTACTAATCCCCGAGAGTTGAACTCAACACGTACTAACATACAGTTCAAGCAGTCAT---AAGAAAAGCAGA
ATCAAGCTGATGACCGCACATGACAACGAGAAAGGGCTCGCTAGTTTTATGGACGGATGCCTCTGCTTTTGGCCAAGAAC
AGAACAGTTAATGCATACCAGTAATCCGTAGGATCGGATCAGT----GTCGTCGGCGTTTTGCATTGCGGCGCGCCGGCA
TCCCCTCGGCCTC------CTCCAACTTGACGTCCTTGGCGAGGGTGACCGCCGCCACGTCCTCCATTGCCTCCTCCTCG
GAGAGACGCAGGGAGAATCTCACGGGCGGCGCCGGGGCATTCCGCTGCCTTGCCCGCCGCCGCGGCCTCTGTTCCCTATT
GGCCTCCGGCCCGAGATACCTGGCGATCTCGGATCGTAATACCTCGGTGTCCATCGCCAACGCTGCCGCAACTCCTATGT
CGTAGAGATCGCGCTCGCCGTTTGTGTCGCCGGAGGTGCATGTGGATGACGACGAGGACTTCAAGGACCCGATCGAATTG
TCCTGCAGTGCCGACGAAGAGATGTGTTCCC
>chr2B_99
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------------------GTAAGAAGAAGAGCTGCTTAATCTATAGTCGTACTCGCGGTTCCCAGAATACTCAAATTTTT
ACCTCCCCTTTCGACGTTGAGTGTGGCACCGTCCCAGCTGACACTTACCAAACCGTTTGGCCA----------------G
TACGGTATATCCCATGTGTTCTTTTTTCTTTTTTTCTTTTTTTTTTGCGAGGAAATCT-----CATGTGTTGTTGATGGT
CCCACAATTTAC-AACAGCGCCATCACTCACTAGCTATGGCTAAGCAAGCGGAAACAAGCTGCCTACAATAATGTGAGTA
ACTGACT----CACAATGACCACAATACTGCCAAAGTTAAAAGGCCACAAACTTATTAGTAGC---A------TATTCAT
GAATGAACACCTCACCATGAACTTTGTTACTACACGGACATGGAAATAACTATTAAAAACAGGATAACCTAAAGCTTTTT
CTTTGAAAGGAAAGAACCCGACCGGCCGGTTAGCCAAAACATTGGACAACTGTTACCCACGAGGAGCCCTT----TGCAT
GCATGCATACCCATCATCTTTTT-GACTACTTTTCCTTTGGCCCGCGGGCTGC---GGGCTTTGTTAATTGTTACACACA
C--ACACACACACCCATTGTTTCCCGTTGGTGCCCTTTCCTTAGCTCACCTGCTTTCGTGCGATGCTGAAACTTCTCTAG
--GACATCCACTCGCAATTGCTCACCCCCACCCACCCTCTGCTAC--------TGCTATATATACCCATGGCATCCCACG
GTCAAAACTCCATGTCCAAGCATCAACTACACACACCTTGCGCTACTGTACAAC-----------CAACACACGCAGCAA
GCATCTGATCATAATAATCTCTCCCCTCCGGCACCACACACACAGCTTCCTCTTATTTTTGCAAGCTAGCTAGAGCGAGC
TATAATTATTAAGATGAAGACCAAGGCTTCCACATTCTTCAAGCAGATGCTGTCCACCATCGTCGCCGTGGTCAAGGCCA
AGTCCACGACGGTGCGCGCCAAGACCAGCACCCTCAAGACGCGCCTCCTCGTCCTCGGCATCCTCCGCAACAGGAAGCTC
CTCGTCAGCGCCATCAACCACAAGATCCACGCCATCATGGGCCAGGACGACCACGCGCGCAAGGAGGAGGCCGCCCAACA
AGACGACGGCGGCAAGAAGGCCATCGTGCTCTACACGTCGCCCAGCTACGTGACGGAGCGCGACGTGGAGG---CCGCCC
------------AGGAGGAGGAGGACAGCGACGACGAGTACTTGACGCACTCGCTGTTCCGCGAGGAAGACGACGATGAC
GACGAGCTGGTGAACGCGCCAGGGTCGGTGATTGACGTGGTGCGCGACGCCAAGGAGAAGGAGGGGGAGGGGGCTGAGTT
CCGGCTGGAGGACGAGATCGACCATGTAGCCGACGTCTTCATCCGCCGGATCCACAAGCAGCTCAAGCTGCAGAAGCTCG
AGTCGTTCAAGAGGTTCTGCGAGATGATGGAGAGGAGCGCTTGATCCAC--------------------CTCCACTCCAG
TGATTTATT-ATTCATAAGTATGCAATGGCGCCAGCTCCATCACTCCTTAAGCCAAGATTATGTTTAACTTAATTGGACG
CCCATGCATGTAAGTAGAAGCAAAAGATGAAGCCAGGCAAGAAGATGCTTATCTTCTGGTAGGGTTTTAGTGGGGATGCC
AAGGTCTACTA------CTCCTACGTGGTACTTTAATCATTACGTACTCATGTTCTTTTGTTCTTTAATCTGGGGGAAGA
TTGTAAAAGTGCTCAAGTTTTGAGGAAAAAACCAATAAATGAAGCAAATAAATAGACGGCATATACTGTATTAGCAAGCC
GAAATGTAACACGTACTGATCACAAATTCTTGAAGAACAAACACGGGTATTGCAGGCAACTGAACAAATTAGCTTCAACT
AAGATTTTCTGTTAACCCCCGAGAGTTGAACTCAACACGTAGTA-CATACAGTTCAAGCAGTCAT---AAGAAAAGCAGA
ATCAAGCTGATGAC--CACACGACAACGAAAAAGGGTTCGCTAGCTTTATGGACGGATGCCTCTGCTTTTGGCCAAGAAC
AGAACAGCTAACGCATACCAGTAATCCGTAGGATC-----AGT----GTCGTCGGCGTTTTGCATTGCGGCGCGCCGGCA
TCCCCTCGGCCTCCTCCAACTCCAACTTGACGTCCTTGGCGAGGGTGACCGCCGCCACGTCCTCCATTGCCTCCTGCGCG
GAGAGACGCAGGGAGAATTTCACGGGCGGCGCCGGGGCATTCCGCTGCCTTGCCCGCCGCCGCGGCCTCTGTTCCCTATT
GGCCTCCTGCCTGAGATACCTGGCGATCTCGGATTGTAATTCCTTGGTGTCCATCGCCAACGCGGCCGCAACTCCTATGT
CGTAGAGATCGCGCTCGCCGTTTGTGTCGCCGGAGGTGGAGGTGGTTGGCGATGAGGACGTCGAGGACCCGATCGGATTG
TCCTGCAGTGCTGACGAAGGGATGTGTTCCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS--------------------------------S----------S---------------------
----------------------------------------------------------S--------------SSSSS--
----------------------------------------------------------SSSSS-----------------
------------S-------------------------------------------------------------------
---------------------------------------------------------S---S-----SSSSSS-------
-------------------------S----------S---------------------------------S---------
--------------------S---S--S-------------------------------------------SSSS-----
-----------------------------------------------------SSS---SS----------S--------
-----------------S-S------------------------------------------------------S-----
------------------------------------SSSSSSSSSSSSSSSSS---------------------------
----------------------------------------------------S---------S----S------------
---------------------------------------------------------------S----------------
----S--------------S-------------------------------------------------S----------
----S---------------------------S-S---------------------------------------------
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-----------S---S-------------------------------------------------------SSS------
---SSSSSS----------------------------------------------------S--------------S---
---------------------------------------S------------S---------------------------
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----S--------------------------------------------S---S-S-----------S------------
---------S---------------------------------------------------------S------------
----------------------------------S---------------------------------------------
-----------SSSSSS-------------------------S-------------------------------------
-----------------------------------------------------------------SS-------------
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----------S---------------S----S-----------------------------S---SSS------------
--------------------------S--------------------------S-----S-------------------S
----S-------------------------------------SSSSS-------S---------------S---------
------------------------------S--------------S---S------------------------------
-S------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
S-----S-----S------------------------S-----------------------S-----S------------
------S------------------------
>forward_236
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--------------------------------------------------------TTTATTTGGCCCGCTACGGT----
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>reverse_1364
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---ATGAGCAGGAGGAGGAGGAG---------------------------------------------------------
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>forward_847
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---------------------------CCACCGTCTGCTACTGCTAC---------------------------------
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>reverse_2483
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--ACTCCTGCCCGAGATACCTG----------------------------------------------------------
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