>input_sequence_74885
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---------------------------------------------------ATGGCCTCCTCCCTCCTCCGCTCCGGCCA
GCGCCTCCTCCGCCACCACCGCGGCCGCCTCCCCGCGGCCTTCTCCACGGCGGCCGCCGAGGAGCTCATCGACGTGCGCA
AGCTGCCCACCGACTACGACCCCTCCACCTTCGACCCGACCGCGCCGCCGTCCCGCCCGCCGCCCTCCGACCGCGTCTGG
CGCCTCGTCGACGACGTCTCCGCCCTCACCCTCGCCGAGGCCGCCGAGCTCTCCGCCCTCCTGCTCCGCCGCCTCGACAT
CCCCTCCGCGCCGCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGATGGCGGCGCGGCGGCCGCCGGCGCGGCCG
GCGACAAGCCGGCGGCCGCGGCCGAGAAGACGGTCTTCGAGCTGCGGCTGGACTCGTTCGACGCGGCGAGCAAGATCAAG
GTGATCAAGGAGATCCGGACGTTCACCGACCTCGGGCTCAAGGAGGCCAAGGAGCTGGTGGAGAAGGCCCCCGCCGTGAT
CAAGGGAGGGTTGTCCAAGGAGGAGGCCGAGAAGATCGTCGAGCGGATGAAGGCCCTCGGCGCCAAGGTCGTCATGGACT
GA------------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G388900
TTTCATTTGCAGTCCTTCGTGCTGTTCTGGACGTATCCTTGATAAATTAATATGTGCTATTCTTTCTGAATATATCAAGC
CCTTTTACTGCTTTTCTGTACCCACCCCCATCCTATTTTAACCGCTCCTGTGTTGATATA--TTTTTGCTTGAGTTCATC
CTTGACACTTACCAGATTTGCGTATGATATCGTCCACATCTTC-------TGAGTTCTGATGGAAGGAGAGTCTGATGAA
CACAGCATGTTGCATCTTCTGATGGAAGGAGCTAATGTCAGATGAAGCAAGCATATGCAAGATTTCCCCTTAACATGATG
GAACAATGGAGTCTCATCGTTATCACATTTTTGTTGTTAGTTACTACTCCCTCCGTAAACTAATATAAGAGTGTTTAGAT
AACTACTTTAGTGATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTATTACTGTCTAGTTTGGTGAACTGCAACG
CAACA-TTGTATATGCCTATTTGATGGCCAGTGTATCAGATATCACAGGTGTAACACAACACTTAAATTCGTTTACCCAT
GTCGTAGTTCACCTGATGATCCGAAACAATTACATCACATCATTTCCGCCGTTCATGCTGTTGAATCACTTGCGATGAAA
ATGCTATTAATCTTATAGGCAATGGCTTCTAAATGTGTCCTCATTTGTTGTATACAATTCGGTTAGCTTGCTTTTTAAAA
ACAACATATAATCTGTCTTGTGTTTTTGATCCTTTTTTGTCAAAATGTTGTGTGTTTTTCAGCTGATTTTGATTGTTTT-
TTTTTCAATTTTTTGAGATTATATACTACTGCTGCTTTAAGTTTTGAGAGAGAAGCATGACCTCATGAATCGTAATGGGC
TCATTGGGCTGGGTTTACTATATGGGCCTAAGTCCAGATCCAAAGTCGCAGGCCATGGTTTCATTTCCAAAACCCAATTC
CCACAGAGCATCGCTCCCACTGGCCCCAGAACCCTAACCTCCGTCTCCACCATGGCCTCCTCCCTCCTCCGCTCCGGCCA
GCGCCTCCTCCGCCACCACCGCGGCCGCCTCCCCGCGGCCTTCTCCACGGCGGCCGCCGAGGAGCTCATCGACGTGCGCA
AGCTGCCCACCGACTACGACCCCTCCACCTTCGACCCGACCGCGCCGCCGTCCCGCCCGCCGCCCTCCGACCGCGTCTGG
CGCCTCGTCGACGACGTCTCCGCCCTCACCCTCGCCGAGGCCGCCGAGCTCTCCGCCCTCCTGCTCCGCCGCCTCGACAT
CCCCTCCGCGCCGCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGATGGCGGCGCGGCGGCCGCCGGCGCGGCCG
GCGACAAGCCGGCGGCCGCGGCCGAGAAGACGGTCTTCGAGCTGCGGCTGGACTCGTTCGACGCGGCGAGCAAGATCAAG
GTGATCAAGGAGATCCGGACGTTCACCGACCTCGGGCTCAAGGAGGCCAAGGAGCTGGTGGAGAAGGCCCCCGCCGTGAT
CAAGGGAGGGTTGTCCAAGGAGGAGGCCGAGAAGATCGTCGAGCGGATGAAGGCCCTCGGCGCCAAGGTCGTCATGGACT
GATCGGCCCCTGCATTTCGAGGTGAGATGAGATCTCTCTCGCGGAATTGTAAACTCAGATTGGCTTGAGCCTGCACATGG
ATGACTTGCTGTAGTGAATTTGTTGAGAAACTGATGGCCCTGTCGCCTATATACCCTAGTTGTTACCTAGGATGTTTTAG
CACACAC----------------------------------------------CAATCACATTCCATTATGATTCAGTTT
GTGACATTTGATCA----------------------------------------------CATTGTTTTGCTGTGATCCT
AGTAACCCTTGCTGTTTAATTGCAACTGCACATTTCTGGATTTACAACTGTCCATTTTATTCAGCAAGTCGAGTTATCGA
TTTTAGACGTAGATGCAAATGTGGTCTACTTTCTGCCGTGCTCT---------------------GCTCTGCCTTGAATG
AAACTGAATCCTTGTGTGTTGGTGTGC-TTAGTTTTCTTATCCACGG-CACATCCCAAATGCCGGGTTCCACTATTCCAT
AGAACAAATAAAGT-ATTGTGCAATATGTATGAAAATTTAAATCTGCTGTTCTTATCTGCAGGTACTGCTGAATGTATGA
ACCATATGATTACCATGGCTGAGTGCTGCGAGCATTGCGGGAC-TGTCAGTGTCAATTGAACTTTT-CAGGCTCGAAGGT
TTTCATAATGCTGGATTCTCTTAGTTGCCT-TCACTCCTATTTTGTTGATGAATTTTCTG--TCTAACACGAAATGTGGA
ATAAAATGTTCTAAAA-ATCAGATAAGAAGCATGCACTGAAATGACTCGTGACTGCAATTGAGTTGCCTTTTGTTAGTTT
TGGAAACTCAAGTTACACTTTGGCTGGCATGCATTTGGTTCCTTGTTAGAAGTACTGTGGTGCGCTGGAGCCCAACCTTT
GCTCTGTGATCTACCTGTGTTGTGGCAAACAAATTCAAGTTTGGTGTAATGTGTTGGCCAGTTAACAAAGTACAGATTTG
TACACTGGATTGTTATGCAGTTATAAAACACATGGTCAACAGATTGTTACCACACATTTGAGTTTCTGATATCATGCTCC
TGGC
>chr1B_1
TTTCATTTGCAGTCCTTCGTGCTGTTCTGGACGTATCCTTGATAAATTAATGTGTGCTATTCTTTCTGAATATATCAAGC
CCTTTTACTGCTTCTCTGTACCCACCCCCATCCTATTTTAACCGCTCCTGTGTTTGATATATTTTTTGCTTGAGTTCATC
CTTAACACTTACCAGATTTGCGTATGATATCGTCCACATATTCTGAGTTGTGAGTTCTGATGGAAGGAGAGTCTGATGAA
CACAGCATGTCACATCTTCTGATGGGGGGAGCCAATGTCAGATGAACCAAGCATATGCAAGATTTCCCCTTAACATGATG
GAACAATGGAGTCTCATCGTTATCACATTTTTGTTGTTAGTTACTAC---------------------------------
--------------------------------------------------TATTACTGTCTAGTTTGGTGAACTGCAGCG
CAACATTTGTATATGCCTATTTGATGGCCAGTGTATCAGATATCACGGTGTAAACACAACACTTAAATTCATTTACCCAT
GTCGTAGTTCACCTGATGATCCGAAACAATTACATCACATCATTTCCTGCGTTCATGCTGTTGAATCACTTGCGATGAAA
ATGCTATTAATCTTATAGGCAATGGCTTCTAAATGTGTCCTCATTTGTTGTATACAATTCGGTTAGCTTGCTTTTTAAAA
ATAACATATAATCTTTCTTGTGTTTTTATCCATTTTTTGTCAAACCTTATGTGTTTTTCCAGCTGATTTTCATTGATTTA
TTTTTCAATTTATTTAGATTATATGCTACTGCTGCTTTAATTTTTGAGAGAGAAGCATGACCACATGAAACATAGTGGGC
TCATTGGGCTGGCTTTTCTATATGGGCCTAAGTCCAGATCCAAAGTCGCAGGCCATGGTTTCATTTCCAAAACCCAATTC
CCACGGATCATCGCTCTCACTGGCCCCAGAACCCTAACCTCCCTCTCCACCATGGCCTCCTCCCTCCTCCGCTCCGGCCA
GCGCCTCCTCCGCCACCACCGCGGCCGCCTCCCCGCGCCCTTCTCCGCGGCCGCCGCCGAGGAGCTCATCGACGTGCGCA
AGCTGCCCACCGACTACGACCCCTCCACCTTCGACCCGACCGCGCCGCCGTCCCGCCCGCCGCCCTCCGACCGCGTCTGG
CGCCTCGTCGACGACGTCTCCGCCCTCACCCTCGCCGAGGCCGCCGAGCTCTCCGCCCTCCTGCTCCGCCGCCTCGACAT
CCCCTCCGCGCCGCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGCGGCGGCCGCCGGCGCGGCCG
GCGACAAGCCGGCGGCCGCGGCCGAGAAGACGGTCTTCGAGCTGCGGCTGGACTCGTTCGACGCGGCCAGCAAGATCAAG
GTGATCAAGGAGATCCGGACCTTCACGGACCTCGGGCTCAAGGAGGCCAAGGAGCTGGTGGAGAAGGCCCCCGCCGTGAT
CAAGGGAGGGCTGTCCAAGGAGGAGGCCGAGAAGATCGTCGAGCGGATGAAGGCCCTCGGCGCCAAGGTCGTCATGGACT
GATCAGCCCCTGCATTTCGAGGTGAGATGAGATCCCTATGGCGGAGTTGGGAACTCAGATTGGCTTGAGCCTGCACATGG
ATGACTTGCTGTAGTGAAATTGTGGAGAAACTGATGGCTCTGTTGCCTGTATACTGTAGTTGTTACCTAGGATGTTTTAG
CACACAC----------------------------------------------CAATCACATTTCATTATGATGCAATGT
GTGACATTTGATTG----------------------------------------------TGTTGTTTCGTTGTGATCCT
AGTAACCCTTGCTGTTTAATTGCAACTGCACATTTCTGAATTTACAACTGTCCATTTTATTCAGCAAGTCAAGTTAACGA
TTTTAGACGTAGATGCAAACGTGATCTACTTTCTGCTATGCTCTGTATGAATGATAACATACGTGGCTCTACCTTGATTG
GAACTGACTCCTTGTGTGTTGGTGTCTACTAGTTTTTTTTATCTG-CACACATCACAAAATTCGGATTCCATTATTCCAT
AGAATCAAGGAAGCAGTTGTGCAATATGTCTGCATATTTAAATCTGCTGTTCTTATCTGCAGGTACTGTTGAATGTATGA
ACCATATGATTACCACGGTTGATTGCTGCGAGCATTGTGGTATTTGGCAGTGTCAATTGAACCTTTTCAGGTTCAAAGTT
TTTCATAATGCTGTATTCTCTTAGTTGCCTCTCACTCCTATTTTGTTGATGAATTTTCTATCTCTAATACGAAATGTGGA
ATAAAATATTTTAAAAGATGAGATAAGAAACATGCGCTGAAATGACTTCTGACCGCAATTGAGCTGCCTTTTATTGATTT
TGGACTG--AAGTTACACTTTGGCTGGCATGCATTTGGTTCCTTGTTAGATGTACTGTGGTGC-----------------
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>chr1A_1
TTTCATTTGCAGTCCTTCGTGCTGTTCTGGACGTATCCTTGATAAATTAATATGTGCTATTCTTTTTGAATATATCAAGC
CCTTTTACTGCTTTTGTGTACCCACCCCCATCCTATTTTAACCGTTCCTCTGTTGATATA--TTTTTGCTTGAGTTCATC
CTTGACATCTACCAGATTTGCGTACGATATCGTCCACATTTTCTGAGTT-------CTGATGGAAGGAGAGTCTGATGAA
CGCAACATGCTGCATCTTGTGATGGAAGGAGCTAATGTCAGATGAACCAAGCATATGCAAGATTTCCCCTTAACATGATG
GAACAATGGAGTCTCATCGTTATCCG-TTTTTGTTGTTAGTTACTAC---------------------------------
--------------------------------------------------TATTACTGTCTAGTTTGGTGAACTGCAAC-
----A-TTGTATATGCCTATTTGATGGCCAGTGTATCAGATATCACGGTGTAAACACCACACTTAAATTCATTTACCCAT
GTCGTAGCTCGCCTGATGATCCAAAACAATTACATCACATCATTTCCTGCGTTCATGCTGTTGAATCACTTGCGATGAAA
ATGCTATTAATCTTATAGGCAATGGCTTCTAAATGTGTCCTCATTTGTTGTATATAATTCGGTTCACTTGCTTCTTAAAA
ACAACATATAATCTGTCTTGTGTTTTTGATCCTTTTTTGTCAAAATCT--TGTGTTTTTTAGCTGATTTTGATTGATTTA
-TTTTCAATTTTTTGAGATTATATACTACTGCTGCTTTATTTTTTGAGAGAGAAGCATGACCTCATGTAACATAATGGGC
TCATTGGGCTGGGTTTACTTCATGGGCCTAAGTCCAGATCCAAAGTCACAGGCCATGGTTTCATTTCCAAAACCCAATTC
CCACAGAGCATCGCTCCCACTGGACCCAGAACCCTAACCTCCCTCTCCACCATGGCCTCCTCCCTCCTCCGCTCCGGCCA
GCGCCTCCTCCGCCACCACCGCGGCCGCCTCCCCGCGGCCTTCTCCACGGCGGCCGCCGAGGAGCTCATCGACGTGCGCA
AGCTGCCCACCGACTACGACCCCTCCACCTTCGACCCGACCGCGCCGCCGTCCCGCCCGCCGCCCTCCGACCGCGTCTGG
CGCCTGGTCGACGACGTCTCCGCCCTCACCCTCGCAGAGGCCGCCGAGCTCTCCGCCCTCCTGCTCCGCCGCCTCGACAT
CCCCTCCGCGCCGCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGCGGCGGCCGCCGGCGCGGCCG
GCGACAAGCCGGCGGCCGCGGCCGAGAAGACGGTCTTCGAGCTGCGGCTCGACTCGTTCGACGCGGCGAGCAAGATCAAG
GTGATCAAGGAGATCCGGACGTTCACGGACCTCGGGCTCAAGGAGGCCAAGGAGCTGGTGGAGAAGGCCCCTGCCGTGAT
CAAGGGAGGGTTGTCCAAGGAGGAGGCCGAGAAGATCGTTGAGCGGATGAAGGCCCTCGGCGCCAAGGTCGTCATGGACT
GATCGGCCCCTGCATTTCGAGGTGAGATGAGATCTCTCTCGCGGAATTGGGAACTCAGATTAGCTTGAGCCGGCACATTG
ATGACTTGCTGTAGTGAAATTGTCGAGAAACTGATGGCCCTTTCACCTATATG--GTTGTTGCTACCTAGGATGTTGCCC
ATCACATTTCATTATGATGCAATGCCTTGCTGTCTAATCCAGTAATGTACCCACAATCGCATTTCATTATGATGCAATGT
GTGCCATTTGATTGCATTATTTCGCTGTGATCCTAGTAAGCAATGTGTGACATTTGATTGCATTGTTTCGCTGTGATCCT
AATAACCCTTGCTGTTTAATCGCAACTGCACATTTCTGGATTTACAACTGTCCATTTG--TCAGCAAGTCGAGTTATCGA
TTTCAGATGTATATGCAAAT---GTCTACTTTCTGCTGTGTTCCGTATGGATAAAATAAAGGCC-GCTCTACCTTGAATG
GAACTGAATCCTTGTGTGTTGGTGTATATTAATTTTCTTATTCGCACATATATCACAAATGCTGCGTTCCACTATTCCAT
AGAAAGAAGGAAGTAATTGTGCATTATGTATGCAAATTTAATTCTGCTCCTCATATCTGCAGGCACTGCTGAATGTATGA
ACCATATGACCACCATGGTTGATTGCTGCGAGCATTGTGGGAC-TGTCAGTGCCAATTGAATCTTTTCAGGCTCAAAGG-
--TCACAATGCTGGATTCTCTTAGTTGCCT-TCACTCTTATTTTGTTGATGAATTTTCTGTCCCTAACACGAAATGTGGA
ATAAAATATTTTGAAAAATCAGATAAGAAACATGTGCTGACATG------------------------------------
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>SNPs
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---------------------------------------S----------------------------------------
----------------------------------------------S---------------------------------
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
----------------------------------------------S-SSSS------------------S---------
-----------------------------------------------SS-------------------------------
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----------------------------------------------S-SS-------------------------S----
----------------------------------------S----------------------------S-S--------
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------------------------------------------S-------------------------------------
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--------------------------------------------------SS----------------------------
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--------------------------S-----------------------------------------------------
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-------------------------------------------------SS-----------------------------
------------------S----S------------------------------SS------------------------
---------------------------------------------------------------S---------S--S-S-
------------SS------------------------------------------------------S-----------
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------------------------------------S---------------------------------S---------
S------------------------SS--------------S-S-SS-------S-------------------------
----SS--SS----------------------S-----------------------------------------------
------------------S---S--------------S------------------------S-----------S-----
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-------S--S------------------S-----S-----------SS----S---------S--------S--SS---
----SSSSS-----------------------------------------S------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_1003
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-----------------------CCCCAGAACCCTAACCTCCG-------------------------------------
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>reverse_2135
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------------------------------------------------------CCAAATGCCGGGTTCCACTA------
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