>input_sequence_74876
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---------------------------------------------CTATAAAACCCCTAAACCCGTGAGCCTCTGGATCA
GGATTGAGACACCATATCTGGCTAATATAGGCGGAAGATAGCAACTTACTGAGCAACAACGAGCGTG-AGGTATTCCACT
AGCCATGACGGCCAGCCACGGGATATTACCACTCACCATTGTCGTCCTTGTTCTATTATCGTCAGGTAGTTCCTGTTCTA
TACATGTATGATTAACATCTCTTTTATTT-GTTGGGGAAGTTGATTTGGGACGGAAGAACAATTGAACTATGC-------
----------TTATATTCTTGTTGTATGTGGTTGTGGCCTTATAGACATCCAAAATGTCAGAGCGTTGGTGAGGGAGGAG
GCTGACGTTACCACAGATTACAACCATTACACATGCACCAAGGTCATTGGC---CGCCGCTGCACCATCCGCACGTGTAG
GGACTCATGCCATAAGAAGCTCAGCGGCGTCGGTAACTGCCTTGCCGACGGCGAGTGTAGGTGCTCATATTACTGCAACA
CACCCCCTTCTTTTATG---ACCAAGTCGGATGAGACGCTCCATTGAAGGGCTAGATGCAGACACCGATAAAATTTTGTG
TTATGA-CACATCT-TGTTCATCA--------------------------------------------------------
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>chr6D_1_TraesCS6D01G315000
ATGGCATACATTAAAGAACTGACATCACTAGAATATGGAAATCTTGACATATACTCAAACTCTTCATTTGTACTAGGACA
TTGAGAAGATGATAACTTGAAATGAGGAGCAGTAGGAGTGCTTATTGACTTAGCATCATGCATGTTAAAACAATGAAGAA
TTTTCTTAATGTAACTCTACTAACTAAGAAATAGCAAACCGGAATTTCTGTCCCGGGTAATCTCCATACCTAAAATTTTC
TTAACATCACCAAAATCCTTCATCTCAAACTCACTACTTAACTATGCCTTTAAAGCAGTGATCTATTTATTGCCCTTGGC
AGCAATGAACATATCATTAACATATAACATCAAGTATATAGATGATCCATCAACAAACGCTCTATGTCCCAGAATCGACC
CCGTTGACCTTCATTTAGCAGTGACCAACTGATCTGTTCTGTTAATTGAAGCCTTTTCCCACAGGAGGGTTAGCAATGGC
TGGAGGTTAGCCAAATGGGCTGGGAGATAAGGGCCATGCAACCACATATATTCGTTTTTCTTCTGAAGTAGCAACCCTTT
AGTACAATTAGCCCAGGTAGGTCCAAGAAAAAAACTATGGAGGAGGACGGAATTGACAGCACACCTAGTGGTCCACATCA
TCCAAATGGATGGCCAGAAACTGGGAGGTCATGATAAGGCTTGGTTTAGGTTCATTTTTACTATCCCGATTGGATGGCTG
CAAATGTTGATGGTCTGAGAGCGCTTGAAAGTTGCACAATTTTAATTCCTCAAAATGAGTTATTTTGTTATAAATTTTTT
GTATGACAATATGGTGTGTATTCATTAATACATAATTTTTT----ATTTGAACAGTAAATAGATTAGAAGTACCATAATT
TGTTTCTATATTTACATACAACCTTAATGACACTATCAATTA-TTTCCATTTTTACACAAAACGATAAGTATACATTAAT
ACAAGTAACAATTAGTGATTGCCATCTTATCTATCGGGAAAACAACTATAAAACCCCTAAACCCGTGAGCCTCTGGATCA
GGATTGAGACACCATATCTGGCTAATATAGGCGGAAGATAGCAACTTACTGAGCAACAACGAGCGTG-AGGTATTCCACT
AGCCATGACGGCCAGCCACGGGATATTACCACTCACCATTGTCGTCCTTGTTCTATTATCGTCAGGTAGTTCCTGTTCTA
TACATGTATGATTAACATCTCTTTTATTT-GTTGGGGAAGTTGATTTGGGACGGAAGAACAATTGAACTATGC-------
----------TTATATTCTTGTTGTATGTGGTTGTGGCCTTATAGACATCCAAAATGTCAGAGCGTTGGTGAGGGAGGAG
GCTGACGTTACCACAGATTACAACCATTACACATGCACCAAGGTCATTGGC---CGCCGCTGCACCATCCGCACGTGTAG
GGACTCATGCCATAAGAAGCTCAGCGGCGTCGGTAACTGCCTTGCCGACGGCGAGTGTAGGTGCTCATATTACTGCAACA
CACCCCCTTCTTTTATG---ACCAAGTCGGATGAGACGCTCCATTGAAGGGCTAGATGCAGACACCGATAAAATTTTGTG
TTATGA-CACATCT-TGTTCATCAATAAACTACATGACTTGATATTGCAAGCAACTAGTACCAATCAATTTAGCAATTTA
TTAAGTTATAATAAACGTTACCTTGTTATTGTACTCCTTTGGAAGCATGCGTTATTAGTAATCTCTCATTAGTTGATCTT
TCATCCGTCAAAGTTAAACTGATTCCATGATTTCTTTCTAAACAACTGCCATGGCCATGGTACCTTAAAATCATCCATGC
ATCAGTTGGTCCAGCGTGGTCGCGAGAATTCAAACACAACTTGAACCGTTGTACAGTATGTACTACCTCTGTAAACTAAT
ATAAAGATCTTATATTAGTTTACAGTAGGATTACTAATTAAGTTCCATACAATAGGACCACCAC--TGGCCATGAGAACT
ATAGCCACGAACCACCTCACTG-TTCTCTCTAGACAAGAGAGGAAAGGAAAGGGAAGCTTTAGGGGCCCTGCTGACAAGG
TCTCCATTACCACTGCTACCATCGCGCATGGCCCAAAGCCTAAGCACACCATCAAGTCGCGTCATTGGAGAAGAATGTGT
CGCCATCTACATGCACTATTTCAGATGGATCTAGAATTACATTATGTTTGGAAGTTTTACACTTAACAATGATCGTCTAT
GGTTAAATTATTTAGTGCATCTACAAAGGTCTTACATAAGCTGACCCTTAATACTAACAGGAGGAGGGAGAATGACACAC
CTTTTGTTAAGATTGGGCTCACATTTTTCTCGCAAAATAAAGATTGGCATCACATTTAAAAGTCAGGTTAATAGTGGACA
ATTTCTTCTAATCCCGTGTTGAAATAGTCCTACTATGAACAGTAAAAATCCAAAAAAATAGAAAAAATTTGTAAAATTCT
AAAGTTTTTTGACAACAAAGATTGCTTATAGTTTGCTTTCTGCCTATAAATTTTCGTGATGAAATCATATTCATGGAGGT
CTGGGCTAAAATAATAGAATCAACACTCCAAAATGCTTTCAAAGATAGTCTTTTAGGAGCATGAGCA
>chr6B_819
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------------------TATTCATTAGTACGTAATTTTTTTTTGATTTGAATACATAATAGATTAGAACTACTACAAAT
GTTTTCTATATTTACATACAACCTTAATGACAATATAAATTATTTTCCAAATTTAGATAAAACGATAAGTATACATTAAC
ATTAACAA-------TGATTGTGATCTTATTACTGA-GAAAACTACTAT-AACGCCCTTAACCCGTGAGCTTCTGGATCC
AGATTGAGGCACCATATCTGCACAATACCTACGGAAAATAGAAACTTACCGAGCAACCACGAGCGCGCAGATATTCTATC
AACCATGAGGGCTAGCCACGGGATATTATCACTTGCGCTCGTCGTCCTTGTTTTCTTATCATCAGGTAGTTCCCATTCTA
TACATGTACGGTTAACATCTCTCTT-TTT-GTTGGGGAAGTTGATTTGAAACGGAAGAACAATTAATCTACGCTTTATAT
AGGACATCAGTTATACTCTTGTTTTATGTGGTGGTGACCTTGAAGACATCCGAAATGTTAAGGCGTTGGTAAGGGAGGAG
GCTGACGTTACCACAGATTACAACCAATACACATGCACGCGGGTCATTTTCCGTCGTCACTGCACATATCCCACGTGCAG
GGACCGATGCCATGCGCAGCTCAGTGCTGTCGGTGACTGCCTTGCCGATGGCGAGTGCAGGTGCTCATACTATTGCAACA
CACCCCCTTCATCCACAACTACTAAGTCGTCTAAGACACTCCATTGAAGTGCCATATGCGGATACTGATAA--TTTTGTG
ACACGAGTATAGCCGTGTTCATCAATAAA---------------------------------------------------
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>chr6B_857
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------------------------------------------------------------AGATTAGAAATACCATAATT
TGTTTCTATATTTACATACAACCTTAATGCCACTATTAATTA-TTTCCAATTTTACACAAAACGATAAGTATACATTAAT
AAAAATAACAATTAGTGATTGCCATCTTATCTATCAGGAAAACAACTAT-AAACCCCTAAACCCGTGAGCCTCTGGATCA
GGATTGAGACACCATATCTGGCCAATACAAGCATAAGATAGCAACTTACTGAGCAACCACGAGCGCG-AGGTATTCCACT
AGCCATGACGGACAGCCACGGGATATTACCACTCACCATCGTCATCCTTATTCTATTATCACCAGGTAGTTCCCGTTCTG
TACATGTACGATTAACATCTCTCTT-TTTTGTTGGTAAAGTTGATTCGGGATGGAAGAACAATTGAACTAAGC-------
----------TTATATTCTTGTTGTATGTGGTTGTGGCCTTACAGACTTCCGAAATGTCAGAGCGTTGGTGAGGGAGGAG
GCTGACGTCACCACAGATTACAACCATTACACATGCACCAAGGTCATTGGC---CGCCACTGCACCATCCGCACGTGTAG
GGACTCATGCCATAAGAAGCTCAGAGGCGTCGGCAACTGTCTTGCCGACGGCGAGTGCAGGTGCTCATATTACTGCAACA
CACCCCCTTTTAC---G---ACCAAGTCGTATGAGACGCTCCATTGAAGGGCTAGATGCGGACACCGATAAAATTTTGTG
TTATGAGCACATCT-TGTTCATCAATAAACTACATGACTTGTTACTGCAAGCAACTAGTACCAATCAGTTTAACATTTTG
TCAAGTTATAATAAGTGTTACCTTGTTATTTTACTCCCTTGGAAGCACGCGTTAGTAGTAATCTCTCATTGGTTGGTCTT
TCATCAGTCAAAGTTAAACCGATTCCATGATTTATTTCTAAACAACTGCCATGGCCATGGTACCTTAAAATCATCCATGC
ATCATTTGGTCCAGCATGGTCGCGAGAATTCCAACACAACTTGAACCGTTGTACAGTATGTACTCTCTCTGTAAACTAAT
ATAAAGATCTTATATTAATTTACAGCAGGAGTACTAATTAAGTTCCATACAATAGGACCACCACACTGGCCATGAGAATT
ATAGCCACGAAGCACCTCACCGTTTCTCTCTGGACAAGAGAGGAAAGGAAGGGGAAGCTTTAGGGGGCCTACCGACAAGG
CCTCCATTACCACTGCTACCATCAGGCATGGCCCAAAGCCTAAGCACAACATCAAGTCGCGTCATTGGAGAAGAATGTGT
CGCCATCTACATGCACTATTTCAGAAGGATCTAGAATCACATTATGTTTGCAAGTTTTACACTTAACAATCATCGTCTAT
GGTTAAACTATTAAGTGCATCTACAAAGGTGTTACCTAAGCTGACCCTTAATACTAACAGGAGGAGGGAGAATGACACAC
CCTTTGTTAAGATTGGGCTCACATTTTTCCCGCAAAATAAAGATTGGGTTCACATTTAAAAGTCACGTTAATAGTGGACG
ATTTGTTCTGATCCCGTGTTGAAATGGTCCTACTATGAACAGTAAAAATCCAAAAATAGTAAGCAAA-TTGTAAATTTCT
AAAGTTTTTTGATAACAAACATTGCTTATA-TTTCCTTTCTGCTTGTAAATTTTCATGATGAAATCATATTCGTGGAGGT
CTGGGCTAAAATAATAGAATCAACACTCCAAAATGCTTTG-AAGATAGTATTTTAGGAGCATGAGCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---------S---S--------------------S-SSS------------S----------
------------------------------------S------------S------------------------------
-S--S------------------------------S-------------S------------------------------
----------------------S----S-S---------------------------S-------S--------------
---------------------------------------S--------------------S------------S------
--------S-------------S--S--------------------------------------------S---------
------------------------------------------S--------S----------------------------
----------------------------------------------------------S---------------------
------------------------S--------------------------------S----------------------
------------SS-S-------------S-----------------------------S--------------------
-----------------------------------------S--S----------------------S----S--S---S
-S------------SS--------------S------S---------S------S---------------S----S----
-----S-------------S-------------S----------------------------------------------
----S----------S---------------S--------------------------------SS--------------
-----------------S-------S----S-----------------------------------------------S-
-----------S--------S----------S------------------S---------------S---S-S-------
S----------------------SS-----------------------S-------------------------------
-------------------------S-----------S------------S-------------------S---------
-------S----S-----------------S----S--------------------------------------------
-S---------------------------S-----------------SS----------------S-------------S
----S----S---------------S------------------------------S-SSS-SS---S-------S----
------------S------S----------S---S--------S-S---------S----------------S-------
---------------------------------------SS--------S-----------------
>forward_758
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------------------GAGCGCTTGAAAGTTGCACA------------------------------------------
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>reverse_2129
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------------------------------------------------CCATCAAGTCGCGTCATTGG------------
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