>input_sequence_74860
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---------------------------------CCATAAAACTTGTGTGCCGCCAA----GCTAAGCTAAGCCACCTTTG
GAGGTGTCTCACAGCTCACTACTCATAGGGGAGGAGAGAGAGCGCGCGCGCACACACTAGATACGACAGGATGATGAGAG
TACCCAGCCTTGCACTGGCGATCCTTGTCCTCGTCGCCCTCTCGGCCGGCACCAGCCGTCCGGGGGTCCTCGCGGCCAGG
AGCCCGGGCGTCCTTCTCGCCCCGACGAGCAGCCGCGGTGTCGAGCAACCGCAGAGACTCGTCGAGGCTGGCGGCAATGG
CGCCCCCGCCGCTAGCTTGGATGCCTCCGGGAAGCCCGTGGCGGCGGCCGGCCCTTCTCCGCCTCCGACGGTGTTCGACG
CGGACCGGATGAGCAAGCGGCGAGTCCGGAGAGGCTCCGATCCCATACACAACAAATGCTGAGGATTGGGCGGACCCATT
GATGGCCGGACTTGAAGGCCACAGCCAACTCTCTTTGTTTCACTTTGCCTCTCGTTTTCTTCTTCTTCTTCCTTTTGCGC
TTTT---TTTTCACCTCTCTTGAGGTTTGAGTCGTTCCATTCCTTCTGGGGTTCAACCGGTTTTGTCATAGAA-------
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>chr2D_1_TraesCS2D01G323800
GCCATGTGCTAGTCTGTAACCGAACAAAAACCCACGGAATGGGTGAGGGCATGCGTGGTGAATGAACGAGGAATGTTACC
ATTTCACACGGAAATGGCGCTCTTTGGGGGCGCGCTTTAAGTTAAACCGAGGGATTTCGGAAAGAGAAAGCGAAAGGGGA
ATGGAATGTCGCTACCGGCGGCAACAGCGTGGGGCTTTGGCTGTGGCCGAGCCTTTGGATCTTTGAACGGGGGCTTTGTG
TTTTGGACTGACCCCACTCAATCCAAGGCAGCAGCAGGACAGTGGGTGCCCACTCTGCCAAGCAAAGAAGGGAGTGAACA
TAACATAAAGCGGCGTCCAGCGGGAGCTTCGGCTAGCGGC---ACAGCAAGCCAAAGCAGGGGATGCCTCTCTTGTTTCT
GGCACA----CATGGGGAGCCGTGCTCCTCCT---------TGCTTCACAGAGAAGCTTCCAAAGTACACAAAGGCGAAA
GCA-CGGGCCTATGATCTGCGATCCAAAGGAAAAACAACAAAAGACG--AGAAGATGGTCTCCACTCTACAGCTCCCAGG
CTCCAAGGCTAGTAGAGA--------------CATTTTTGTTTTCCACCTGGCACGACCATACT--ATTTAGCAGCGCCC
TGAACAC-AAAACCTCTGCTTTTTCTTTCTTTCGTGGTCACGGTCACGCTCACTTGCCTTTTTCTTTTCTGTGATGTGGA
TTACTGCGGAAAACCCTGCATTACGGAAGATACCTCGGTACCTGATTCGCCCCCACTAGATTTTAGCAGCCTGTATGTAT
-------------ACGGGGTTTACATGCAAGCAAGTGTAAAGCCATATGTTGCCTTGTTGGGTG--TGTGT------CCA
GTGCACATCGTATCTCCCTCTCTCTTTGAGCTTTATTTATGCCTTTGGACCAAGATCTTACCCGT-------CACCCGTC
GCTGTTTCAGATGTGACCCTACGGGGATACCCTCCTCTCCTCTCCTATATCTATCTACAACAACAGAGACACGCAATAAG
ATGGTCCAAG--------CTTCCTCCACT-CCCCCATAAAACTTGTGTGCCGCCAA----GCTAAGCTAAGCCACCTTTG
GAGGTGTCTCACAGCTCACTACTCATAGGGGAGGAGAGAGAGCGCGCGCGCACACACTAGATACGACAGGATGATGAGAG
TACCCAGCCTTGCACTGGCGATCCTTGTCCTCGTCGCCCTCTCGGCCGGCACCAGCCGTCCGGGGGTCCTCGCGGCCAGG
AGCCCGGGCGTCCTTCTCGCCCCGACGAGCAGCCGCGGTGTCGAGCAACCGCAGAGACTCGTCGAGGCTGGCGGCAATGG
CGCCCCCGCCGCTAGCTTGGATGCCTCCGGGAAGCCCGTGGCGGCGGCCGGCCCTTCTCCGCCTCCGACGGTGTTCGACG
CGGACCGGATGAGCAAGCGGCGAGTCCGGAGAGGCTCCGATCCCATACACAACAAATGCTGAGGATTGGGCGGACCCATT
GATGGCCGGACTTGAAGGCCACAGCCAACTCTCTTTGTTTCACTTTGCCTCTCGTTTTCTTCTTCTTCTTCCTTTTGCGC
TTTT---TTTTCACCTCTCTTGAGGTTTGAGTCGTTCCATTCCTTCTGGGGTTCAACCGGTTTTGTCATAGAAATACATG
TACATAGATGCCGATGGAAGGATGGGCGCATGTGTACCTACTACT---TATTACTTGAGTCTGAATCGAGCATTGTCCTT
CCGGATACGTACGCAACTCAGTTTTACAGTAGTATACTTTTCAAGATTCCTTCAGTTCCCGAGCTGAGATTTGCACGACG
AAATGCCTCATGGTGAGTGGGTGGG-------------------------------TGCTCCACTTCGGCGACCAGATCA
CTTCACTTCAAGGGG---------------------------------------------------------CGCGCACA
CGAGGGTGGCACCTAGCCCGGTTCACCGCTGGTGCCACGCGAACAGGGGCGTGTGCCGTCGCGGGTTGCGTCCGTAGTTC
TTGGCTGCCTGCTCGTCACTGACAATCGAACAGCTTAGCCGGTGGGCCAAAGACGAGCACGCTTGACGGCGCTGCGTGCT
ACTACTC-------------------------------------------------------------------------
---------------------------------CAGTATTTACATTTAGTACCACACCGCTCGTTCGGGTGGCCACTTCG
CGGCCTAAATAACGAGACGACGAACCATGTATCGCTGACGACGCAAGGCTGGCGCTAGCTACGCTGGCCTGCCGAGGCAA
AAAGCGGTCGTGATGTACTTCTGGCCGGGCTTGGCCCAGCAGCCTGTTGTTACCCTATCGCTGTGTTAACTCGTGCATGT
TTGGGGGGCTAAGAAGTGCGGAGGGACGTCAGTCTTTTTTTTTCTTTTACCATTTTGACTCATTTATACATGGTGAGTGG
TGCCTACTTGTACATGCGCACCTATAACAACAAAAAACGGCCACATCAGTTTCGTTTGAACATTCAAATTTGTTTTTCAT
GTTT---AAAAAAACAAGTAAATCATATATAGATCTAGCAAAACTCCAGCTTATTTAGATCACAGACTTGGGAGATGGTG
ACAGCTTAGTTGGTTCATTCAAAAAAAA-----TGTTCAAAGATCAACATTTTCTAGAAATTGCAAAGAATTTCAGTAAA
TCATCCATGTACAGTAGTGATCTGCAAAAATTTGGCTGACCGCTGGTTTGTGAGACATTAGCTGATTTAGTCAGCCAA
>chr2B_1
GCCATGTGCTAGTCTGTAACCGAACAAAAACCCACGGAACGGGTAAGGACGTGGGTGGTGAATGAATGAGGAATGTTACC
ATTTCACACGGAAATGGCGCTCTTTGGGGGCGCGCTTTAAGTTAAACCGAGGGATTTCGGAAAGAGAAAGCGAAAGGGGA
ATGGAATGTCGCTACCAGCGGCAACAGCGTGAGG------------------CTTTGGATCTTTGAACGGGGGCTTTGGG
TTTTGGACTGGCCCCACTCAATCCAAGGCAGCAGCAGCAGCGCGGCCAAAG-------------AAGAGTGGAGGGAACA
TAACATAAAGCGGCGGCCAGCGGGAGCTTCGGCTA---GC---ACAGCAAGCCAAAGCAGGGGATGCCTCTCTTGTTTCT
GGCACACATGCATGGGGAGCCGTGCTCCTCCT---------TGCTTCACAGAGAAGCTTCCAAAGTACACAAAGGCGAAA
GCAACGAGCCTGTGATCTGCGATCCAAAGGAAAAACAACAAAGACGAGAAGAAGATGGTCTCCACTCTACAGCTCCCAGG
CTCCAAGGCTAGTAC-------CAGTAGAGAGCATTTTTGTTTTCCACCTGGCAGGACCATACTGTATTTAGTAGCGCCC
TCGACACAAAAACCTCTGCTTTTTCTTTCTTTCGTGGTCACGCTCACGGTCCCTCGCCTTTCTCTTTTCTGTGATGTGGA
TTACTGCGGAAAACCCTGCATTACGGAAGATACCTAGGCGCCTGATTCGCCCCCACTAGATTTTAGCAGGCTGTATGTAT
GTATACGGCCAATACGGGATTTAGATGCAAGCAAGTGTAAAGCCATATGTTGCCTTGTTGGGTGTGTGTGT------CCA
ATGCACATCGTATCTCCCTCTCTTTGAGCTTTA-ATTTATGCCTTTGGACCAAGATCTTACCCGT-------C-------
GCTGTTTCAGATGTGACCCTACGGGGATACTCTCCTA--------------TATCTACAACAACAAACACACGCAATAAC
ATGGTCCAAGGCTCCAAGCTTCCTCCACTGCCCCCATAAAACTTGTGCGCCGCCAGCCAGGCGAAGCTAAGCCACCTTGG
GTGTCACAACTCTCTCTCACA-----------------------------CACACACTAGCCAGGACATCATGATGAGAG
TCCCCAGCCTTGCACTGGCGATCCTTGTCCTCCTCGCCCTCTCGGCCGCCACCGGTCGTCCGGCGGTCCTCGCGGCCAGG
ACCCCGGGCGTCCTTCTCGCCCCAACAAGCAGCCGCGGTGTCGACCAACCGCGGAGGCTCGTCGAGGCTGGCGGCAATGG
CGCCCCCGCCGCCAGCCTGGACGCCTCCGGGAAGCCCGTGGCGGCGGCCGGCTCTTCTCCGCCTCCGACGGTGTTCGACG
CGGACCGGATGAGCAAGCGGCGAGTCCGGAGAGGCTCCGATCCCATACACAACAAATGCTGAGGATTGGGCGGACCAAAT
GATGGCCAGACTTGAAGGGC-CAGCCAAATCTCTCTGTTTCCTCTTGCCCCTCGTTTTCTTCTTCTTCTTTCTTTGGCGC
TTTT---TTTC--CCTCTCTTGAGGTTTGAGTCGTTCCATTCCTTCTGGGGTTCAACCGGTTTTGTCATAGAAATACATG
TACATAGATGCCGATGAAAGGATGGGCGCATGTGTAC---CTACT---TATTACTTGAGTCTGAATCGAGCATTGTCCTT
CCGGATACGTACGCAACTCAGTTTTACAGTAGCATACCTTTTAAGATTCGTTCAGTTCCCGAGCTGAGATTTGCACGACG
AAATGCCTCATGGTGAGTGGGTGGGTGCCTTGGTGGAAAATGGCACGGAAACTTCCTGCTCCACTTCGACGACTAGATCA
CTTCACTTCAAGTCTTCAACGTGGCCGGTGTCTCAAGGCGGCTGAGCCAGGCGAAGGGTCCGGTACTGGGGACGCGCGCA
CGAGGGTGGCCCCTAGCCCGGTTCACCGCTGGTGTCACGCGAACAGGGGCGTGTGCCGTCGCGGGTTGCATCCTTAGTTC
TTGGCTGCCTGCTCGTCACTGACAATCGAACAGCTTAGCCGGCGGGCCGAAGACGAGCACACTTGACGGCGCTGCGTGCT
ACTAGTATTTAAATTTAGTTTTTTTAGGCAATCTCGCGAAGCTTTATTAAACTGCAACAATGTTTACAGAGATAAAAGAT
AGATTGCCGGGGTGTCCTAATCAAACATAACGACAGTATTTAAATTTAGTACCACACCGCTCGTTCGGCTAGCCACTTCG
CTGCCTAAATAACGAGACGATGAAGCATGTATCGC----------AGGCTAGCACTAGCTATGCTGGCCTGCCGAGGCAA
AAAGCGGTCGTGACGTACTTCTGGCCGGGCTTGGCCCAGCAGGCC--TGTTACCCTAGGTCGCTGTTAACTCGTGCATGT
T--GGGGGCCAAGAAGTGCGGAGCGTCGTTAGTCTTTTTTCCTTTTAC--------------------CATGGTGAGTGG
TGCCTACTTGTACATGCGCACCTATAACAACAAAAAATGGCCACATCAGTTTCGTTTGAACATTCAA-TTTTCTTTTCAT
GTTTAAAAAAAAAACAAGTAAATCATATATGGATCTAGCAAAACTCCAGCTTATTTAGATCACAGACTTGGGAGATAGTG
ACAACTTAGTTGGTTCATTCAAAAAAAAAACTTTGTTCAAAGATCAACATTTTCTAGAGATTGCAAAGAATTTCAGTAAA
TCATCCATGTACAGTAGTGATCTGAAAAAATTTGGCTGACCGCTGGTTTGTGAGACATTAGCTGATTTAGTCAGCCAA
>chr2A_1
GCCATGTGCTAGTCTGTAACCGAACAAAAACCCACGGAACGGGCAAGCGCATGCGTGGTGGATGAATGAGGAATGTTACC
ATTTCACACGGAAATGGCGCTCTTTGGGGGCGCGCTTTAAGTTAAACCGGGGGATTTGGGAAAGAGAAAGCGAAAGGGCA
ATGGAATGTCGCTACCAGCGGCAACAGCGTGACG------------------CTTTGGATCTTTGAACGGGGGCTTTGTG
TTTTGGACTGGCCCCACTCAATCCAAGGCG---GCAGCAGCGCGGCCAAAG-------------AAGAGTGGAGGGAACA
TAA-----AGCGGCGGCCAACGGGAGCTTCGGCTA---GCCGCACAGCAAGCCAAAGCAGGGGATGCCTCTCTGGTTTCT
GGCACA----CATGGGGAGCCGTGCTCCTCCTCCTCCTCCTTGCTTCACAGAGAAGCTTCCAAAGTACACAAAGGCGAAA
GCACGGGCCCTATGATCTGCGATCCAAAGGAAAAACAACAAAAGACG--AGAAGATGGCCTCCACTCTACAGCTCCCATG
CTCCAAGGCTAGTAGTACTACTCAGTAGAGAGCATTTTTGTTTTCCACCTGGCAGGACCAA-----ATTTAGCAGCGCCC
TGAACAC-AAAACCTCTGCTTTTTCTTTCTTTCGTGGTCACGGTCACGCTCGCTTGCCTTTCTCTTTTCTGTGATGTGGA
TTACTGCGGAAAACCCTGCATTACGGAAGATACCTCGGTACCCGATTCGCCCCCACTAGATTTTAGCAGGCTGTAT----
-------------ACGGGGTTTAGAT--------GTGTAAAGCCATATGTTGCCTTGTTGGGTGTGTGTGTGTGTGTCCA
GTGCACATCGTATCTCCCTCTCTTTGAGCTTTAG-TTTATGCCTTTGGACCGAGATCTTACCCGTCACCCGCC-------
GCTGTTTCAGATGTGACCCTACGGGGATGCTCTCCTA--------------TATCTACAACAACAAAGACACGCAATAAC
ATGGTCCAAGGCTCCAAGCTTCCTCC-------CCATAAAACTTGTGCGCCGCCAGCCAGGCGAAGCTAAGCCACCCTGG
GTGTCACAACT---------------------------------------CACACACTAGCTAGGACACCATGATGAGAG
TCCCCAGCCTTGCACTGGCGATCCTTGTCCTCGTCGCCCTCTCGGCCGCCACCGGTCGGCCGGGGGTCCTCGCGGCCAGG
AGCCCGGGGGTCCTTCTCGCCTCAACGAGCAGGCGCGGTGCCGAGCAACCGCGGAGACTCGTCGAGGCTGGCGGCAATGG
CGCCCCCGTCGCCAGCTTCGATGCCTCCGGGAAGCCCGTGGCGGCGGCCGGCCCTTCTCCGCCTCCGACGATGTTCGACG
CGGACCGGATGAGCAAGCGGCGAGTCCGGAGAGGCTCCGATCCCATACACAACAAATGCTGAGGATTGGGCGGACCAAAT
GAGGGCCAGACTAGAAGGGC-CAGCCAACTCTCTCTGTTTCCCTTTGCCTCTCGTTTTCTTCTTCTTCTTCTTTTGGCGC
TTTTTCTTTCC--CCTCTTTTGACGTTTGAGTCGTTCCATTCCTTCCGGGGTTCAACCGGTTTTGTCATAGAAATACATG
TACATAGATGCCGATGAAAGGATGGGCGCATGTGTAC---CTACTACTTATGACTTGAATCTGAATCGAGCATTGTCCTT
CCGGATACGTACGTAACTCAGTTTTACAGTACG-TACTTTTTAAGATTCGTTCAGTTCCCGAGCTGAGATTTGCACGACG
AAATGCCTCATGGTGAGTGG---------------------------------------------TCGGCGACCAGATCA
CTTCACTTCAAGGGG---------------------------------------------------------CGCGCACA
CGAGGGTGGCACCTAGCCCGCTTCACCGCTGGTGCCACGCGAACAGGGGCGTGTGCCGTCGAGGGTTGCATCCGTAGTTC
TTGGCTGCCTGCTCGTCACTGACAATC-AACAGCTTAGCCGATGGGCTGAAGACGAGCACGCTTGGCGGCGCTGCCTGCT
ACTA----------------------------------------------------------------------------
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>SNPs
---------------------------------------S----S---------------------S-------------
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----------------S--------------S--SSSSSSSSSSSSSSSSSS----------------------------
----------S--------------------------S-SS-S--SSSSSSSSSSSSSSSSSSS----SS----S-----
---------------S-------------------SSS------------------------------------------
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---------------SSS------------------------------------S-------------------------
---------------------------------------------------S---------S------------------
---------------------------------------------------------------------S----------
-----------------------S--------------------------------------------------------
-----------------------S-SS-SSS-SS---------------------------------------SSSSSSS
------------------------------S-----SSSSSSSSSSSSSSS--------------S-------------S
-----------------------------------------------S-------S------S---------------S-
-S-SSSSSS-S-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--S----SS----------
-S----------------------------------------------S----S-S------------------------
-----------------------S----------------------------S---------------------------
------------S-------------------------------------------------------------------
----------------------------------------------------------------------------S-S-
-------S----------S-S-------------S------S---------------------------------S----
----------SSS-------------------------------------------------------------------
----------------S--------------------SSS----------------------------------------
--------------------------------S--------S-------S------------------------------
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---------------------------------------------------------------------S----------
------------------------------------------------S-------------------------------
----S-S-------------------------------------------------------------------------
------------------------------------------S-------------------------S-S---------
-S------------------S---S----------SSSSSSSSSS-----S--S-------S------------------
-------------S----------------------------S-SSS----------SSS-SS-----------------
-SS------S-------------S-S---S----------SS-S--SSSSSSSSSSSSSSSSSSSSSS------------
-------------------------------------S-----------------------------S---SS-------
------------------------------S---------------------------------------------S---
---S------------------------------------------------------S---------------------
------------------------S-----------------------------------------------------
>forward_960
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------------------------------------------------------------GATCTTACCCGTCACCCGTC
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>reverse_2458
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---------------------------------------------------------TCGCTGTGTTAACTCGTGCA---
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