>input_sequence_74858
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----------------------------------------CTATAAAATGACCGCCGTCTCTGCTGCCGATTCTCAGCTG
ATGAGCAGCTTCCTCCTTCCGCCTCCCTTATTACCTTCCCACCACCACCGCAACCACA---AGCGGCTGCATCTATCCAA
TCCCCATTGCTTCGCCCCAGCTC-CTCGCTG-CCACCACCATGCCGGCCTTGCCGGATGCGGCCGTGCTGGCCTTCTACC
TCGCCGACGGCTTCGCCAAGATCCTGGTGCCGCTCCTCTGCTTCCTCGGCAGCGCCGGGCCGTCCACCCGCAGCCCCGCC
GTCGACGACGCGGCCGCCTTCCTCCTCCTCCTCCTCCCGACGGTCTACCTCGCCGGCGTCATCCTCGCCCACTTCGTCGG
CGTCGTCCTCGCCCACCTCCACCTGGCCACCATAACTGCGG------------------------------------CTT
CCGCCGGTCCGGCGCGGCTCGTCGCTCTGCTCTTCACGCTCTTCTCCATGCTACTTCTCCTCATTGCTGTGCCGTTCGCC
GCCGTCTACGTCTTCCTCGGCGCCGGCAAGCGCGGGACTGGGCCGGGGTTCAGCGAGAACGTGCTCAGCTAAATCTCAGC
TCAATCCCCCTCCTACCCTACCAGGCCATACGGA----------------------------------------------
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>chr1D_1_TraesCS1D01G077100
CTGCGGCCGGCGCCACCGGAGATGCGGCGAGGGCGGGGACCGGCGACAAGGACGGGCGGCGAGGGCGGGGTCCGGCGGCG
ACGAGGAAGACGGGCGACGACGACGCGCGGCGAGGGCGGGGACCGGCGACGACGACGGGCGGCGAGAGCGGGGTCCGGCG
GCGACGAGGAAGACCGGCGAGGGTGGGGATCGGCGACCACCGGAGGGGACAGAAGGCGCGGCACCGCGCTCCCCCGAACG
GGACATGCGGATCCCCCCGAGGAAGAAGAGAGCTGGGGCGATTTAATTTTTTTTACTCGGATCCAGCGGCTGCGTGGCTC
AGATCGAACGGCCCGGGCTGGACCGGCCGAAACTTTAGGCCGGCGCGCCGGCGCCTATAAGTGCCCATACGTACTTGCCT
CAGCCAAACTTTAACGCGGTGGCTGCGGATTCTGACGTACGTCAGTTACCTCTGCAGAGCCTGACATGTGGGCTCGGAAA
CAAGCTACCCCACATACCAGGGGCACGGAGGTGGATTCGGGCCTCCGGTCTGAGACACGCGTGGTGTGCGAATGCCGCCC
TGCGGTTCCCAATCAAATACCAGAACTTTCAAACCCGCAGTGGTGCAGCGTTGTCCTTACTCCATGATTAAACAGAAAAT
GCTACACGTACGCTCCGCGAGGCGCTGCCGGCCGTTTGTAGTTTGTTGACACGACGATTGCTTAGCTCGGCGGCAGCGGC
GCCGGTCGCATCGCACGAGTCTTGCCGCTGCGTGCATGGATCGGTTCGTGTTGAGTACGCTCCTCCCTGGTGGCCCGTTG
CCTGCTGACCCTGAGCGACGACCAGGACATGCCAAGGATCGAACGAACGCTCACCGCTGCCATGTGTCTCGCACTCTCAC
TCCCGTGGTTCTCGCGTCTCGCGTGACGACATATTGGCGCCTGTTCTCCCCCAGCCCTCCCTCCGATGTAGCCCCGACGC
GAGGAGTAGCCCCGACTGGATGGGGACGCTGGCTCGAATCCTATAAAATGACCGCCGTCTCTGCTGCCGATTCTCAGCTG
ATGAGCAGCTTCCTCCTTCCGCCTCCCTTATTACCTTCCCACCACCACCGCAACCACA---AGCGGCTGCATCTATCCAA
TCCCCATTGCTTCGCCCCAGCTC-CTCGCTG-CCACCACCATGCCGGCCTTGCCGGATGCGGCCGTGCTGGCCTTCTACC
TCGCCGACGGCTTCGCCAAGATCCTGGTGCCGCTCCTCTGCTTCCTCGGCAGCGCCGGGCCGTCCACCCGCAGCCCCGCC
GTCGACGACGCGGCCGCCTTCCTCCTCCTCCTCCTCCCGACGGTCTACCTCGCCGGCGTCATCCTCGCCCACTTCGTCGG
CGTCGTCCTCGCCCACCTCCACCTGGCCACCATAACTGCGG------------------------------------CTT
CCGCCGGTCCGGCGCGGCTCGTCGCTCTGCTCTTCACGCTCTTCTCCATGCTACTTCTCCTCATTGCTGTGCCGTTCGCC
GCCGTCTACGTCTTCCTCGGCGCCGGCAAGCGCGGGACTGGGCCGGGGTTCAGCGAGAACGTGCTCAGCTAAATCTCAGC
TCAATCCCCCTCCTACCCTACCAGGCCATACGGAAGAAAATTACACTCCTTTAGCTTTTTGTAGAGGTGGAGTATTAGTT
TGTGACAAGAAAGATAGCATGTGACGCCATGGATGTCAAGGCTCAAGGTCTGGGACTCAGGGCCATGGATGGTGGCCGGC
AGC--------AGACAAGAGACTACGGAGTGCAACTGAAGAGTGGCCCCGTCGT-CTCCGCGGTTCTCTACTCGGTCGCT
GTCTTGTGTCCGTGGATAGACTCAGCACCGGTGGGTCGTCAC-------CCACATGTGAACCGCTGGGCCACGTCGGCGG
CGTCCATGGCTGATTACT--TCCCCGACAAGCCAT--TCAACCCAGGCTTGTTATAGATGTCGTCCCCTAT---TACTAG
TACTAGTTGATCACACAAGCTTAACGTTCTATCTTTCCCCTCTTGACTTTCCATCGGTGGTCAGTGACTTCAGCATGTTA
ACCCAAAGTGTCTTTTTTTAATTTATGTGTAAAGGTGCTCTTCTTTGTGTTGATCCCCTGATAGTTTGCTTTGTCGTGGA
GTTAATCCCCGCCAAAAAAAGAACCTGCAATGCAATACTATAAGTACTATGCACGGAAGCCCCCTCTGCTCAGAGAGACA
GGCAGTACGCCTTGAAGGGGCATAGTGCTCTGTCCAAGGGCGAGCTTCGTGATCAGGACCACTGTCAGCAACTCACTAAT
GATTGTTAACAAGTACACTAGGAGCACTCAATCTTTCCTGGAAAACTAAAAAGAGCACGGTTTGTAGAGGCAGAAAGGCG
CGTAAGCCTGACACCGTCGGGCACAAGCAGATTTCGCGTACTCCGCCAAGCTGCACAGCGTTTGTAGGATTGCAACGTGC
ACGTCAATGCGGTTCATGTCCTTTGCCCTTCGGCGGAGTATTTGACAAAAAAACTACCACATTTCATATTTCCGTCTCAT
AGAACTACCACATTTTGAAAATTGACCAAAAATTTCATATTTCCGAGCTCACTGTCCTAGCCCTAGCCGTCTTCGTTCAT
GGCGGCGGCGGATCCAA
>chr7D_968
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-------AGCCCCGACTGGATGGGGACGCTGGCTCAAATCCTATAAAATGACCGTCGTCTATGCTCCCGATTCTCAGCTG
ATTAGCAGCTTCCTCCTTCCGCCCCCTCTC---CCTTCCCACCACCACCTCAAGCAGCTGCAGCTGCTGCATCTAT-CAA
ACCCCATTGCTTC-----AGCTC-CTCGCCGCCCACCACCATGCCTGCCATGCCGGATGCGGCCGTGCTGGCCTTCTACC
TCGCCGACGGCTGCGCCAAGATCCTGCTGCCGCTCCTCTGCTTCCTCGGCAGCGGCGGGCCGTCCACCCGCAGCCCCGCC
GTCGACGAGGCGGCCGCCTTCCTCCTCGTCCTCCTCCCCACGGTCTACCTCGCCGGCGTCATCGTCGCCCACTTCGCCGG
CGTCGTCCTCGCCCACCTCCACCTGGCCACCCCGACGCCGGCCACG------------ACTGCGGCCGCGGCCGTCTCCT
CCGCCGGTCCGGCATGGTTCGTCGCTCTGTTCTTCTCGCTCGTCTCCGCGCTACTTCTCCTCGTTGCTGTGCCGTTCGCC
GCCATCTCCTTCTTCCTCGGCGCGGGAAAGCAGGGGACTGGGCCGGGGTTCAGCGAGAACGAGCTGAGCTTAATCTCAGC
TCAATCCCCCCT----CCTACTGCGCCATACGGAAG-AAATTATACTCCTTTTGC-TTTTGTAGAGGTGGTGTGTTAGAT
TTAGTTACTCATATTAGCATGTGACTCCATGGACGTCAAGATCTGGGA------------GGCCATGGATGCTGGCCGGC
GGCGGCGCAGCAGACAAGAGACTAAGGAGTGCGACTGAAGAGTGGCCCCGTCGAGCTCCGAGGTGCTGTACTCCATCGCT
GTCTGATGACCATGGACAGATTCCGCTCCGGCGAGGGACCGGGGGATCACCACATGTGGACCGCTGGGCCACGTCGGCGG
CGTCCATGGCTGATTAGTTATCCCCGACAAGACATTTTCAACTCAGGCTTGTTATAGATGTCGTCCCCTAT---TACTAG
---TAGTTGATCACACAAGCTTAATGT-----------------------------------------------------
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>chr7B_970
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---------CCCCGACGGGGTGTGGACGCTGGCTCAAATCCTATAAAATGACCGTCGTCTGTGCTGCCGATTCTCAGCTG
ATTAGCAGCTTCCTCCTTCCGCCCCCTTTC---CCTTCCCACCACCACCGCG---------AGCTGCTGCATCGATCCAA
ACCCCATTGCTTC-----AGCTCGCTCGCCACCCACCACCATGCCTGCCATGCCAGATGCGGCCGTGCTGGCCTTCTACC
TCGCCGACGGCTGCGCCAAGATCCTCGTGCCGCTCCTCTGCTTCCTCGGCAGCGGCGGGCCGTCCACCCGCAGCCCCGCC
GTCGACGACGCGGCCGCCTTCCTCCTCGTCCTCCTCCCCACGGTCTACCTCGCCGGCGTCATCCTCGCCCACTTCGCCGG
CGTCATCCTCGCCCATCTCCACATGGCCACCCCGACGCCGGCCACGGCACCGAGCACGACTGCGGCCGCGGCCGTCTCTT
CCGCCGGTCCGACGCGGTTCGTCGCTCTACTCTTCGCGCTCCTCTCCGCGCTACTTCTACTCATTGCTGTGCCGTTCGCC
GGCGTCTCCTTCTTCCACGGCGCCGGCAAGCGCGGGACTGGGCCGGGGTTCAGCGAGAACGTGCTGAGCTAAATGTCAGC
TCAATCCCCCCT----CCTACTGCGCCATACGGAAG-AAATTATACTCCTTTTGC-TTTTGTAGAGGTGGTGTGTTAGAT
TTAGTTACTCATATTAGCATGTGACTCCATCGACGTCAAGATCTGGGA------------GGCCATGGATGCTGGCCGGC
GGCGGCGCAGCAGACAAGAGACAAAGGAGTGCGACTGAAGAGTGGCCCCGTCGAGCTCCGAGATGCTGTACTCCATCGCT
GTCTGATGACCATGGACAGATTCAGCTCCGGCGAGGGACCGGGGGATCACCACATGTGGACCGCTGGGCCACGTCGGCGG
CGTCCATGGCTGATTAGTTATCCCCGACAATACATTTTCAACTCAGGCTTGTTATAGATGTCGTCCCCTATTATTACTAG
---TAGTTGATCACAGAAGCTTAATGT-----------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS----------------------------S------------------S-----S-------------------
--S--------------------S--S--SSSS--------------------S--SS------S---------------
S------------SSSSS-----------S---------------S---S------------------------------
------------S-----------------------------------------S-------------------------
---------------------------S----------S-------------------------------------S---
-------------------------------SSS--SS------------------------------------------
-----------------S-----------------S-----S-----SS-------------------------------
-------S-S-------------------------------------------------------S--------------
----------SSSSSS-----SSS------------S------S--------S--S--------------S--S----S-
-SS-SS-SSS-SSS-----------S-------S------SSSSSS-SSSSSSSSSSSSS-----------S--------
S-----------------------S-------S--------------------S------S---S--S-----SS-----
----SS--S--S----S---S-----S----S-S-SSSS-SS----------------S---------------------
----------------S--------------S----------S-------------------------------------
SSS---------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_605
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-------------------------CTTTCAAACCCGCAGTGGTG-----------------------------------
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>reverse_2156
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---------------------------------------------------------------------------GTGGA
GTTAATCCCCGCCAA-----------------------------------------------------------------
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