>input_sequence_74800
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-----------------------------------------------------------------ATGGCCAAGATCCAG
CCCCTTCCTTCCTCTCCCTGCTCCA---CCTCTTCCTACGGAAACCAA---CA------------GAGCTCGCAGGCTTA
CACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAACGGCTGCGCGGTGTACGGCCCAGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCGC
AAAGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGCTGCGCCCACAACGGCGGCCAGGACGAGGAGGCAACGCCGTG
GTTCAGAGTGCGCCGGGCCGAGAAGGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACGATGGACG
GA---TGCTG---CGC---GCGCAAGCCGGAGTACAGAATCCGCGACGTGGATGGCACGGTCGTGGCGGAGGTGGCGCGG
AAGCAGACGACGGCGGGTGTGGTGCTCGGAGAGGACGTGCTGACGCTGACGGTGGGGCCGGAGGTGGGCCACCTGCTCGT
CTTGGGCTTGGTCGTTGTGCGTGGCCTCATGAACGGATCCATGTGA----------------------------------
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>chr3D_1_TraesCS3D01G443000
TAGCTATATCATAACTTTTTTTAGTGTATTCTAAATTTCCACATGGATAATTAATGCGCTTGCCTATGGTTCACTTGAGA
ACTGAGTCACTTGACTAAGAAATAACTATTTTCTTACTTAATTTTAGATAGCCGGCTGATCAAGATT-----TTTTTTGT
ACTTGCAAGTACCAAGATGTCCCGATCGAATCGTTATTAGTGGCGACTTCAACGGTATAGTTATTTATTATTTTCCATGG
AAATAACACAACAAATAAAATTTGTATTATTGGTGCTCCTCGCACATTAAAAGAAGTGTATACTTGTATAAGTAAATAAT
GTTACACAAAAAGTCCAGTGCTTAACAATCTTTACGTTGAGAAGAAAGTAAAGAAGTCCTTAGGAAGAGGTGGAGCAGGG
A-------------------------------------------------------------------------------
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---------------------------GAAGCTAAAGAATTATACTTT-------------------CATTTTCTGTCGT
CGCTACTGAACAACCAATTGTCCAAAGAGCTGGGACCT---GATTACACAAATCCAGGATTACTGTATTGTGACAAAAAA
TT-GTGTCTTATTTTTATTCAGTATGT-CATGTGTGGATAAGTGATGTTATAAGCAAAGTTGAGGGTCGCC---------
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------------------AAACAGAACAATCTATTTTCTGACAAGTGTTCCAGATAGAACGATCATCGGTTTCTTTCTAA
ATGCGATCG--CACACATGTTTTG---TATTGCGTTGGATTACGGTTTAATAAGATCCAGGTTTTAAC------CCCATG
CATTGGATTGATGTTCTGCAGAATTTTTTGGAACAT-----------CTACCATACAAGCACTAGCAAAACGTGATGCTA
ATCGGGTGCTGACTAGGAGCGGTACAGCAG---T--ACTAGATGGAGCATAAACAACTTTGGTGTGCGGCACTATTCTAT
TCTTA----------CGCGTGACGCACACA---CTGCCATT--------------------------------------A
ACA--AAGTAGTTCAAGCATCTATAAGTAGATGAAACCAACCACTGCAC----CCACCATCCAAATCATCGCAACAGCAG
C--AGCCG-------GGCAGAGCAATCTTCTTCTTC---GATCTCTCGTCAT-------TCATCAATGGCCAAGATCCAG
CCCCTTCCTTCCTCTCCCTGCTCCA---CCTCTTCCTACGGAAACCAA---CA------------GAGCTCGCAGGCTTA
CACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAACGGCTGCGCGGTGTACGGCCCAGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCGC
AAAGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGCTGCGCCCACAACGGCGGCCAGGACGAGGAGGCAACGCCGTG
GTTCAGAGTGCGCCGGGCCGAGAAGGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACGATGGACG
GA---TGCTG---CGC---GCGCAAGCCGGAGTACAGAATCCGCGACGTGGATGGCACGGTCGTGGCGGAGGTGGCGCGG
AAGCAGACGACGGCGGGTGTGGTGCTCGGAGAGGACGTGCTGACGCTGACGGTGGGGCCGGAGGTGGGCCACCTGCTCGT
CTTGGGCTTGGTCGTTGTGCGTGGCCTCATGAACGGATCCATGTGATGGATGAATTCCACTCAAAAAAAAAAAATGTGAT
GGATGAATGCAACGGGTGCTCGTTCTCCGGTTCTCCTGGCGAAAATCTCCAATTTTGTACGTACAACTAGTTTAGAGTAG
CCGAGAGCTTGTTTCACACGAACATTTAGAAGCCATTTTGGGAACATTTTTAGCCAAACTGAGGACATGAAAACTCTTTT
TGGTGGATGTTTTTTCACCCTTTATCAAGTGTTGTTCGAAGAAATCCTTGTAGACGTATACATGTGGTAACATAATTGCA
AGTGTTTTCTGTTTGGATGGAACGCAACAACATTTGACAAAA-GTCAGAGCTAGATTCTTTTGAGGACGGGATGCCATGA
AAAGGAAATACCATATGGTAGGATGGATAGAGCTTTGCACCCTAAGGGCATCTCCAATGGAAGGCGCTTGCTTAGGGGCT
TAACTAGCTAAAGTAAATGATTTAAATTCCTAGCGTCTGTGCAAGAGTCCGTGTCTCCAACGGTAGCAGCTATCCAATAG
GCGCCTGGGCCGATTTTTCCTCTCCTAATACGTGAAAAATTCCTTGTAGCGCCCGGCGCATCAGCTGGCATTAGTGCCAA
AGATAATCCTTGG-------------------------------------------------------------------
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-------------------ATCGACCAGGAATTGAACACAACGGCCAGGGAAACAATCCTAGCGTCGGGCACTAGCGCCC
GCGTTGGAGATG--------------------------------------------------------------------
---CCCTAAGGCTTTGGGAGGACTTGGGCTGTTCATTTGCAAGAAGATGAACATATTACTTCTCATGAAATGGTGTTGGA
AGCTTTCTCATGATCCCACGGGGTTGTGGATGACGATCATAAAAGCCAAATATTTTCCTAATTATTTCTTGGATAACC-T
AGAGGATCTCATACTTGGAACGGGAGCCGAAGAGTCAAGAAGATTTTTAGTTTAGATACTAAATTTGCAGCGGGCAACGG
ATGGGACACTTTTTTCAAGTTCACCAAATGGCTTAGTACAACGCCCCTTCATGAGAAACACCCTCACATCTTTGTCCTAG
CCTCT
>chr3A_1
TAGCTATATCATAACTTGGTC-AGTGTATTATAAATTTCCACATGGATG----ATGCGCTTGCCTATGGT-CACTTGAGA
ATTGAGCCACTTGACTAAGAAATAACTATTTT----CTTAATTCTAGATAGCCGTCTGATTAAGAATTATTATTTTTTGC
ACTTGCAAGAATCTAGATGTCCTGATCGAATCATTATTAGTGGCGACATCAACAGTATATTTATTTATTATTTTCCCAGG
AAATAACACAACAAATAGAATTTGTATTATTTGTGTTCCTCGCACATTAAAACAAGTGTATACTTGTA--AGTAACTAAC
GTTACCC-AAAAGTCCAATGATTCACAATCTTTACGTTGATGGTCCCTTAAATATTTTCTCTAACTAGTATTACCATCCA
TATATATTAACAGATCTTCCAGAGGGCGAAAACGATAGCTCCGGGCCCAATTGGTTTGTATGAAAGTTACAAGATGAAAA
CAAGATTGTGAGTGACATCCGAATGACGGAATTAGAATACTAACTCAGAAAAAAAAAGTACATAGACATATGCTACCGAA
AGGTTATGTCCAAAAAATATGTATTTGGGGAACATGAAACTATACATACGCATAGTCACCGATCCTAATTATATTTCATA
TCCTAATTCAAACATGTGCGCCTGGGGTAGTGTCCATTTGTCGATACATAGCTCGAGAGTTTAATCTCGTTCCTTTTTAA
AAATAAAGCATGTGTGCGATGTGCAAGAGTAGTAACAAATTTGGCCCCGCTGTTCAATTTTCAATATTCTTTTTTGACCC
CAGTTTTTATTTTGTGTACATGGTTCAAATCATGAATATTATTATTATCAGAATAGTAATAAAATGCTTTTATTTGGTAA
AATGATTGACAACATATTGTTTATTGGCACAATGAATACAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
ATATACGAAAATCAAGCACAGACAGTTGACATCCCTATTAACAAAAGTAGAATCTACCAAAACATTTTGGTCAAATAAAG
ACATAGGAATGAACTAGAGCATGTTAAGGGAGTCCGTACACTCTTTAAGCAAGGATTAGTTGGGGTCCCCGCAAAAAAGG
GATTCGTTGATGTTTGGAGCCTAAATTGTTTAATAAGTGGGGCTAATCAGGGATCAGATCCGAACTGTGCTTGCTCGATC
CTTTAATTTTCCTCTAACTTTCTAGAGGGCCGATCCACGATGTGATGTGTACATCGCATAGTATACCATATGTACACCCT
CGCACGCGGTGTGTATGTTTCTCAATCGGAAAAACAAATGTTCAGCCTGCTCCACGCGTACATACGATCGGAGCATGAAC
GCGTAAAGAAATTATCTTTCTCGTCGAGGTAAATGCCCAACGAAACTAGGGGCACCACTGTTCGATCACGTCCACGCTTC
CAGGTGTTGGTCATCTCCACCAAGCGGTCAGCTTGGTAAGCTACCTACCCCGCAAAAAAAAAGGTGTCGGTCATCTCCTG
TTCATAAAAAAGGCCAATGATCTGGTCAACGAGTTTCATTGTCTCTGCTGGCTGATTCCGCTCCCATTCCAGTACAAAAT
ATGGTACTGTAACATGTATGGAGGGTTTATACGCGCTCCGCAGAATAATTGACGTTACAAATTAGTGATCTTCAAAACGC
TCTATTATTGACAGAGTCGTCGCTGATCTGCGCATGGTTCCCAATTTGGGGATGGCATCTGCTTTGTTTAATGAATAGCA
CTGCGTTGCCCTTGTCCTTGTTAGCTGGAAGCTAAAGAATTATGCTCAGATCAGAAGCGTGCATATCCATTTTCTGTCAT
CGCTACTGAACAACCAATTGTCCAAAGAGCTGGGACCT---GATTACACAAATCCAGGAATACTACATTGTGACAAAAAA
AAAGTGACTTATTTTTATTCAGTTATGCCATGTGTCGATAAGCGATGTGATAAACTAAGTTGAGGGTCACCGGCAGCCCG
ACATCAGAAAGGGGGGGAGGACGACTGAAGCTTTATCG----CCCACGGTCCAGAACAGTCCATGGACTGGAAGACGAGA
GAAAACTAGGAGTAGAACTAAAACTGGCCTGGCTGTTTAATTTGGCGCAGGTACTTATCCTTCCTTGAGCGTACATTGT-
---------------------CAGAACAATCTATTTTCGGACAAGTGTTCCAAATAGAACGATCATC-A----TTTTAAA
ATGCAAGCGTACACATATGTTCTG---CATTGCATTATATCACGGTTTAATTTGTTCCAGGTTTCAAC------CGCATG
CGTTGGATCGATGTTGTGCAAAACAAATTGGAACTG-----------CTACCGTAGAAGCACTAGCAAAACCTGATGCTA
ATCGGATGCTGACTAGGAGCAGTACATTAGTACT--ACTAGATGGAGCATAAACAACTTTGGTGTGCGGCACTATTATAT
CCTTA----------CGCATGACGCACACA---CTGCCATT--------------------------------------A
GCA--AAGTAGTTCAAGCATCTATAAATAGATGAAACCAACCACTGCAG----CCACCATCCCAATCATCGCAACAGCAG
C--AGCAG-------AGCAGAGCTA---TCTTCTTCTTCCA--------------TCTCTCGTCGATGGCCAAGATCCAG
CCCCTTCCTTCCTCTCCCTGCTCCATCTCTTCCTCCGATGATCACCAG---CA------------GGGCAGACAGGCGTA
CACGCTCTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTGTACGGCCCAGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCGC
AAAGGC---GGCATGTTCAGGAGGTGGGAGGTCTGCCGGTGTACCCACGACGGAGGCGAGGGGGACGAGGCGACTCCTTG
GTTCAGCGTGCGCCGGGCCGAGAAGGGCGGGGCCGCAGTCACGATGCACGACGGCGCGGGGACGTGCTACACGATGGACG
GA---TGCT------C---GCGCAAGCCGGAGTACAGAATCCGCGACGTCGATGGCATGGTCGTGGCCGAGGTGGCGCGG
AAGCAGACGGCGGCGGGTGTGGTGCTCGGAGACGACGTGCTGACGCTGACGGTGGGGCCGGAGGTGGGCCACCTGCTCGT
CTTGGGCTTGGTCGCCGTGCGTGGTCTCATGAACGGATCCATGTGATAGATGCAT-------------------------
--------GCAAAGGGTGTTCGTTCTCCGGTTCTCCTGGTCAAAAATCTCGACTTTTGA---ACATCTAGTTTAGAGTAG
CCAAGAGTTTGTTTCGCACGGACATTTAGAAACCATTTTGGGAACATTTTTAGCCAAACTGAGGACATGAAAACTCTTTT
TGATGGATGGTTTTTCACCCTTTATCAAGGGTTGTTCGACGAAATTCTTGTAGACGTATACATGTGGTAACATAATTATA
GATGTTTTCTATTTGGATGGAACGCAACAACAATTTAAC-AA-GTCAGAGCCAGATTCTTTTGAGGATGGGATGCCATGA
AAAGGAAATACCATATGGTTGGATGGA-----------------------------------------------------
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>chr3B_427
TCG-----------------------------------------------------------------------------
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------------------------------------------------------------------------------AT
CGCTACTGAACAACCAATTGTCCAAAGAGCTGGGACCTCTCGATTACATTAATCAAGAAATACTGTATTGTGACAAAAA-
-T-GTGGCTTATTCTTATACAGTTATGCCATGTGTGGATAAGTGATGTTATAAACAAAGTTGAGGGTTGCCGACAGCCTG
ACATCAGAGAAAGGGGAAGAACAACTGAAGCTTATCGCTCGCCCCACGGTCCAGAACAGTCCAGGAGAA-----------
---------------AACTAAAACTGGCCGAGCAGCTTGATTAGCTGTAAATACGTATCCTTACTTAAGCATACGTGCCT
ACTTTCTTTATGCTCGCTAAACAGAACAACTTATTCTCTGTCAAGAGTTTCAAATAGAAGGATCCTTAGACCGTAGTTCG
TTTGATCGTTTCG--CATGTTTTGCATTATTGCCTTGGATCGGGGTTTAATTAGTTCCCGGTTTCAAC------CGCATG
CATTGGATCGATGTTCTGCAAAAGAAAATAAAATAAAATGGAAGAAACTACCATACAAGCACTAGCAAAACGTGATGCTA
ATCGGATGTTGACTAGGAGTAGTACATAAGTAG-----TAGGTGGAGCATAAACAACTTTGGTGCA--GCACTATTCTAT
CCTAA----------CGCGTGACGCGCACAATACTGCCATTAACTAATTTCCAGTCCAGAGACCTGACACGGAATAACGA
ACA--AAGTAGTTCAAGCATCTATAAATAGATGGAACCAGCCACTGCAT----CCGCCATCCCAATCATCGCAACAGCAG
CCGAGCAG-------AGCAGAGCAA---TCTTCTTCTTCCA--------------TCTCTCGTCGATGGCCAAGATCCAG
CCCCATCCTTCCTCTCCCTGCTCCA---GCTCTTCCTACGGAAACCAA---CA------------GAGCTCGCAGGCTTA
CACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAACGGCTGCGCGGTGTATGGCCCCGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTTCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCGC
AAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGCTGCGCCCAAGACGGAGGCCAGGACGAGGAGGCGACTCCTTG
GTTCAGCGTGCGCCGGGCCGAGAAGGGCGGGGCCGCCGTGGTGATGCACGGCGGCTCGGGGACGTGCTACACGATAGAAG
GA---TGCTG---CGC---GCGCAAAGCGGAGAACAGAATCCGCGACGTGGACGGCACAGTCGTGGCGGAGGTGGCGCGG
AAGCAGACGGCGGCGGGTGTGGTGCTCGGGGAGGACGTGCTGACCCTGACGGTGGGACCAAAGGTGGACCAACTGCTCGT
GTTGGGCTTGGTCGTTGTGCGTGGCCTCATGAACCGTTCCTTGTGATGGATG----------------------------
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>chr3B_616
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---------------------------------------------------------AACGATCATGGA----TTTTAAA
ATGCAAGTG--CACAGATGTTCTG---TATTGCATTATATCGCGGTTTATTTAGTTCCAGGTTTCAACCCCATGCATATG
CATTGGATCGATGTTCTGGAAAACAAGTTGGAACTG-----------CTACCCTAGAAGCACTAGCAAAACGTGATGCTA
ATCGGATGCTGACTAGGAGTAGTACATTACTACT--AGTACATGGATCATAAACAGCTTTGGTGCA--GCACTATTCTAT
CCTTAGTTCCTTACGCGCGACGCACACACTGGACTGCCATTAACAAAGTTGTTCAAGCATCCAGAA-------------A
AAAACAAGTAGTTCAAGCATCTATAAATAGATGAAACCAACCACTGCAC----CCACCATCCCAATCATCGCAACAGCAG
C--AGCAG-------AGCCGAGCAGAGCAA-TCTTCTTCGA--------------TCTCTCGTCAATGGCCAAGATCCAG
CCCCTTTCTTCGTCTCCTTGCTCCA---CTTCTTCCTCCGGAGTTCAA---CA------------GGGCAGGCACGCGTA
CACGGTGTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCGC
AAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGCTGCGCCCAAGACGGCGGCCAGGACAAGGAGGCGACTCCTTG
GTTCAGCGTGCGCCGGGCCGAGAAGGGCGGGGCCGCCGTCGTGATGCACGGTGGCGCGGGGACGTGCTACACGATGGACG
GA---TGCT------C---GCGCAAGCCGGAGTACAGAATCCGCGACGTGGATGGCACGGTCGTGGCGGAGGTGGCGCGG
AAGCAGACGGCGGCGGGTGTGGTGCTCGGGGAGGACGTGCTGACGCTGACGGTGGGAACGGAGGTGGGCCACCTGCTCGT
CTTGGGTTTGGTCGTTGTGCGTGGCCTCATGAACGGATCAATGTGATGGATGCTCCTTCTCCGG----------------
--------------------------CCGGTTCTCCCGGCGAAAATCTCCAATTTTGTACA----GCTAGTTTAGAGTAG
CCGAGAGTTTGTTTCACACGAACATTTAGAAAGCATTTTGGGAACATTTTTAGCCAAACTGAGGACATGTAAACTCTTTT
TGGTGGATGGTTTTTCACCCTTCATCAAGGGTTGTTCGAAGAAATCCTTGTAGACGTATACATGTGGTAACATAATTACA
AATGTTTTCTGTTTGGATGGAATGCAACAACGATTTGAC-AAAGTCAGAGCTAGATTCTTTTGGACACGGGATGCCATGA
AAAA-AAATACCATATGATTGGATGGATAGACCTTTGCACCCTAAGGGAGTGAATTGCAGAAAACATCGATATTGAAGGT
TAGGATTGCAGTAACCACATTTCTACGGTTTTGTGCTAGAAACCACTAATTTCAAGTCTAACTTTTTGCGAGAAAAGCAC
TAGCTGGTGGCTTTGTGTCATTTGATGACGATTATGACATGTAGGGACCGCAAATGATAACGTGGCATAACTGTTCATGT
TGGACGTCGTTATAGATATTTTTTTACCAGAAAATCCCTTCCTTCTTCAAAAAAGAAAAAAACACTCATGAGTAGAGGGG
TCGCCTCCGACATGTCGTCCTGGTGCCGCCCCTCCCTCGCCGGCCACCTCCCCGTGTCCTCCCGGTGCCGCCCCTTCCTC
GCTGCGCCGCCTCCCTATATGCTCCCGGCGCCGCCCCTCCTGCGACAGGAGCACCACCTCGGGGGAGAGAGCGCGAGCAG
CCGCGGCGCCCGCCGCGCACGGGGGTGCGCAGCCGCAGGGCTGGCCGCAAGCGCGAGCAGTAGCGGCGCCTATGGCCATG
ACGCGAGGAGCAGTGGCACGGGTGTGCACAGCAGCGGCCCTGGGCACGCATGGGAGCAGCGGCAGCGCGCATGGTAGCGA
GCGCGAGGAGCAGCGGCGCGGGCACGCACCGTGCATGAGAGCAGCGGCGGTGCGCATGGCGACGAGCGTGAGCAGCAGCG
GGGCGCATGGCCGCGAGCACAAGGAGCCGCGGCACGGGCGCGCGCCGTGCATGAGAGCAGTCGCGGCGTGCATGCCGAGA
GCATGAGCAGCAGCGGCGCGCATGGCCGCGAGCTCGAGCAGCGGCGGCGTGTGGCCATGCATGGACGGGAGGAGCAGCGG
CACTGGCTGCGCATGAGCGGGAGCAAGGAGCAGCGACGTCGTCGGTGGGGGAGATGGCCACCATGGTCGTCGACGGTGGC
CTCGCGGAGGAGAGACGGGGAGGTAGGCAGTGAGGGGCTGCTTGCTTTTTTAGTTTTTGAAGAAGGGTGTACATGTAAAT
TTTTAGGGACTATTTTGTAAATCTGTATAAATCCTCTGTCTATCGGCATCTACTGTGAACCGGTATGCCACGTCGGCAAA
AGTGTGACCAGCTGTCATAATCGTCATCAAATGGGCCAAAGCGGCCAGCTAGTTTTTTTTCAAAAAAATAGACTCGGAAT
TAGTGGTTTTTGGCACAAAACTGTAGAAGTGTGGTTTCTGCCACCCTGGCCTTCAATGTCGATGTTTTCTGTAATTCACT
TCACCCTAAGGCTCTGAAAGGACATGTGTTGTTCACTTGCAAGAAGATGAATATATTACTTCTCATGAAATGGTGTTGGA
AGCTTTCTCAGAATCCCATGGGGTTGTGGGTGACGATCTTAAA-------------------------------------
----------------------------------------------TTAGTTTAGATACTAAATTTGCGGTGACCAACGG
ATAGGAATTTTTTTTCTAGTTCACCAAATGGCTTAGTACAACGCCCCTTCATAAGAAATATCCTCACCTCTTTGTCCTAG
CCTC-
>chr3B_647
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--------G--CACACATGTTCTG---TATTGCATTGGATTACGGTTTAATAAGATCCAGGATTCAAC------CATATG
CATTGGATCGATGTTCTGGAAAACAAGTTGGAACTG-----------CTACCCTAGAAGCACTTGCAAAACGTGATGCTA
ATCGGATGCTGACTAGGAGTAGTACAGTAGTACT--TGTG---GGAGCATAAACAACTTTGGTGCA--GCACTATTTTCT
A------TCCTTACGCGTGACGCACACACTGGACTGCCATTAACAAAGTAGTTCAAGCATCCATAA-------------A
AAA--AAGTAGTTCAAGCATCTATAAATAGATGAAACCAACCACTGCAC----CCACCATCCCAATCATCGCAACAGCAG
CCGAGAAG-------AGCAGAGCAA---TCTTCTTCTTTGA--------------TCTCTCCACAATGGCAAAGATCCAG
CCCTTTCCTTCCTCTCCCTGCTCTA---CTTCTTCCCCCGGAGTTCAA---CA------------GGGCAGGCACGCGTA
CACGGTGTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCAGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGGGC
AAGGGCGTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGCTGCGCCAAAGACGGCGGCCAGGACGAGGAGGCGACACAGTG
GTTCAGCGTGCGCCGGGCCGAAAAGGGCGAGGCCGCGGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACGATAGAAG
GATGCTGCG------C---GCGCAAGCCGGAGTACAAAATCCGGGACGTGGATAGCACGGTGGTGGCGGAGGTGGCACGG
AAGCAGACGGCGGCGGGTGTGGTGCTGGGGGAGGACGTGCTGACGCTGACGGTGGGACCAAAGGTGGACCACCTGCTCGT
GTTGGGCTTGGTCGTCGTACGTGGCCTCATGAACCGTTCCTTGTGATGGATGCAT-------------------------
--------GCAACGGGCGATGGTTTCTCCTAGCG--------AAAATGTTGAATTTTGT---ACAGCTAGTTTAGAGTAG
CCGAGAGTTTGTTTCACACGAACATTTAGAAAGCATTTTGGGAACATTTTTAGCCAAACTGAGGACATGTAAACTCTTTT
TGGTGGATGGTTTTTCACCCTTCATTAAGTGTTGTTCGAAGAAATTCTTGTAGACTTATACATGTGGTAACATAATTACA
AATGTTTTCTGTTTGGATGGAACACAACAACAATTTGGC-AAAGTCAGAGCCAGATTCTTTTGGGGACGGGATGCCATGA
AAAGGAAATACCATATGGTTGTACGGATGGACCTTTGCACCCTAA-----------------------------------
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---------GGCTCTGGGAGGACTTGGGCTGTTCACTTGCAAGAAGATGAATATATTACTTCTCATGAAATGGTGTTGGA
AGCTTTCTCATAATCCCACGGGGTTGTGGGTGACGATCTTAAAAGCCAAATATTTTCCTAATTCTTTCTTGGATAACCCT
AGAGGATCTCGTGCTTGGAGCGGGAGCCGAAGAGTCAAGAAGATTTTTAGTTTAGATACTAAATTTGCGGTGGGCAACAG
ATGGGACACTTTTTTCTAGTTCACCAAATGGCTTGGTACAACACACCTTCATGAGAAATACCCTCACCTCTTTGTCCTAG
CCTCT
>chr3D_764
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-------------------------------------------------------------------AAACGTGGTGCTA
ATCGCATGCTGATTCGTACTACAGTACTAGTAGATGACTAGATGGAGCATAAACAACTTTGGTGCC--GCACTATTCTAT
CCCAA----------GGTGTGACGCTCACAACACTGCCATTAACAAAATCCAGACCCTGA--------------------
----------------------ATAAATAGGCCAAACAGCAGCAGCAGAGCAGGGCCG--------------------AG
CGGAGCCG-------AGCAGAGCAATCTTCTTCTTCTTCGT--------------TCTCTCTTCAATGGCCAAGATCCAG
CCCCTCCCTGCGCCCCCCT---CGC---CGTCGTCCTCCGATGATCAC---CTCCAGGGCCAGCGGGCCAGGCAGGCATA
CACGGTGTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTCTACGGCCCCGACGGCAGCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCCTCATGGACCGCGCCGGCAACGCCCTCATCAGGTTCAGGCGC
AAGGGCTTCGGCATGTTCAGGAGATGGGAGGTCTGCCGGTATGAG------------GAGGGGGAGGAGGCGACGGCGTG
GTTCAGCGTTCGGCGGGCCAAGAAGGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCAGCGACCTGCTACAGGATCGACG
GG---GGCTG---TGC---GCGCAAGCCTGAGTACAGAGTGAGCGGTGTAGATGGCTCGGTCGTGGCGGAGGTGGCGCGG
AAGCAGACGGCGGCGGGGGTGGTGCTGGGGGAGGACGTGCTGACGCTGACGGTGGCGCCGGAAATGGATCAGCTGCTCGC
CCTGGGCTTGGTCGTCGTGCGTGGCCTCATCAACCGCTCCTTGTGA----------------------------------
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>chr3A_809
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-------------------------------------CTAGATGGAGCATAAACAACTTTGGTGTA--GCACTATTCTAT
CCTAA----------CCAGTGACGCCTACA---GCGCCATAAACTAATGCTTCAGACACCCTCCATAGTTAACAGAATAG
--------------AAGCACCTATAAATAGGCCAAACCAGCCACTGACGCCCACCACCATCCCAATCATCTCAGCTCATC
TCATCGCGACGTTAAAGCAGAGCAATC----------------------------TCTCTCGTCCATGGCCAAGATCCAG
CCCCTTGCTGCCGCCGC---CTCAC---CGTCGTCCTCCGGAGTTCAA---CA------------GGGCAGGCAGGCGTA
CACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAACGGCTGCACGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCTTCTTCATGGACCGTGAGGGGAACTCCCTCATCAGGATCAGGCGC
AAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTGTCGGTGCGCCCACAACGGCGGCCAGGAGGAGGAGGCCACGCCGTG
GTTCAGCGTGCGGCGGGCCGAGAAGGGCGGAGCCGCCGTGGCGATGCACGGCGGCACGGGGACGTGCTACACGATCGACG
GG---TGCTC---TGC---CCGCAAGTCGGAGTACAGGGTACGCGGCGTGGATGGCGCGGTGGTGGCAGAGGTCGCACGG
AAGCAGACGCCGGCGGGGGTGGTGCTGGGGGACGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGATCACCTGCTCTT
CCTGGGCTTGGTCGTCGTGCGTGGCCTCATCAACCGCTCCTTGTGATGGATG----------------------------
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>chr3A_940
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-----------------------------------------------------------------TCATCGCAACAGCAG
CAGAGCAG-------AGCAGAGAAA---TCTTCTTC---GA--------------ACGCTCTCCAATGGCCAAGATCCAG
CCTCTTCCTGCCGCGGC---CTCTTCTTCTCCCTGCTCCGGAG---ACCAGGA------------GGGCAGGCAGGCGTA
CACGGTGTGGATGAAGTCGCTGATCTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCTTCTTCATGGACCGTGAGGGGAACTCCCTCATCAGGATCAGGCGC
AAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTGCCGGTGCGCCCACAACGGCGGCAAGGAGGAGGAGGCCACTCCGTG
GTTCAGCGTGCGGCGGGCCGAGAAGGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACAATCGACG
GG---TGCT------CTGGCAGCAAGTGGGAGTACAGAGTACGCGGCGTGGATGGCGCGGTGGTGGCGGAGGTCGCACGG
AAGCAGACGCCGGCGGGGGTGGTGCTGGGGGACGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGAGCACCTGCTAGC
TTTGGGTTTGGTCGTGGTGCGTGGCCTCATGAACCGCTCCATGTGATGGATGCAT-------------------------
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>chr3B_962
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----------------GCAGAGCAA---TCTTCTTCTTCCATCTCTCCTCTCTCCTCTCTCCTCAATGGCCAAGATCCAG
CCCCTTCCTTCGTCTTCCTGCTCCA---CCTCTTCCTCCGGAGATCACCACCA------------GAACCGTCAAGCGTA
CACGGTGTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCGC
AAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGGTGCGCCCACAACGGCCACGAGGACGAGGAAGCGACGCCGTG
GTTCAGCGTGCGACGGGCCGAGAAGGGCGGAGCCGCCGTGACGATGCACGGCGGCGCGAGGACGTGCTACAGGATCGCCG
GG---TGCTCCGGCGC---GCGCAAGCCCGAGTACACAGTCCGCGGCGTCGATGGCGCGGCCGTGGCAGAGGTGGCGCGG
AAGCAGACGGCGGCGGGGGTGGTGCTAGGGGAGGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGATCAGCTGCTCGT
CCTGGGCTTGGTCGTAGTGCGTGGCCTCATCAACCGCTCCTTGTGATGGA------------------------------
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>chr3D_999
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---------------------------------------------------------------CAATGGCCAAGATCCAG
CCCCTTTCTTCGTCTCCCTGTTCCA---GCTCTTCCTCCGATGATCACCAGCA------------GGGCAGGCATGCGTA
CACGGTGTGGATGAAGTCGCTCGTGTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCG
TCGATAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGTCAGGGGAACGCACTCTTCACGATCATACGC
AAGGGCTTCTGGGCGTTCAGCAGGTGGGAGGTCTGCCGCTGCGCCCACGACGGCAGCGAGGAGGAGGAGGCGACGCCGTG
GTTCGGCGTGCGTCGTGCTGAGAAGGGCGGGGCCGCCGTCGCGATGAACGGCGGCGCGGGGACGTGCTATAGGATCGATG
GG---TGCTG---TGC---GCGCAAGCCGGAGTACAGAGTCCGCGGCGTGGATGGCGCGGTCGTGGCCGAGGTCGCGCGG
AAGCAGACGGCGGCGGGGGTCGTCCTGGGGGAGGACGTGCTGACGCTGACGGTGGGGCCGGAGGCGGATCACCTGCTCGT
CCTGGGCTTGGTCGTCGTGCGTGGCCTCATAACCCGCTCCTTGTGATGGATGAA--------------------------
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>chr3A_1001
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-----------------------------------------------------------------ATGGCCAAGATCCAG
CCCCTTCATTCCTCTCCCTGCTCCA---CTTCTTCCTCCGGAGTTCAA---CC------------GGGCAGGCAGGCGTA
CACGGTGTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGCG
TCGACAACTACGGCTGCAGGGGCGGCCACGAGGCCCTCTTCATGGACCGTCAAGGGAACGCACTCATTAGGATCAGACGC
AAGGGCTTCTGGACGTTCAGGAGGTGGGAGGTCTGCCGTTGCACCCACGACGGCAGCGAGGAGGAGGAGGCGACGCCGTG
GTTCAGCGTGCGTCGTGCTAAGAAGGGCGGGGCCGTCGTGGCGATGCACGGTGGCGCAAGGACGTGCTACAGGATGGACG
GG---TGCTCCGGCGC---GCGCAAGCCCGAGTACAGAGTCCGCGGCGTGGATGGCTCGGTCGTGGCGGAGGTGGCGCGG
AAGCAGACGTCGGCGGGGGTGGTGCTGGGGGAGGACGTGCTGACGCTCACGGTGGCGCAGGAAATGGATCACCTGCTCGT
CCTGGGCTTGGTCGTCGTGCGTGGTCTCATCAACCGCTCCTTGTGATGGATG----------------------------
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>SNPs
-----------------SS-SS--------S-----------------SSSSS-----------------S---------
-S----S-------------------------SSSS-------S----------S-----S----S-------------S
---------S-S-S--------S---------S--------------S-----S-----S----------------SS--
-----------------S-------------S---S----------------S---------------SS-----S---S
-----S-S---------S--S--S----------------SSSSSSSS----S-SS-S--SSSSSSSSSS-SSSSSSSSS
S-------------------------------------------------------------------------------
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-------------------------------------------S--SS------------------------------S-
-----------------------------------------------------------S--------------------
S-----S----------------SSSS--------------------------S--------------------------
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----------------------------------------------------S----------------SSSS---S---
----S-S--------------------------S------------------------------S----------S----
--------S-----------S--SSSS--------S--------------------------------------------
-----S--------------S------S----------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------S-----------------------------------S-----------------
---------------S-------------------------------S--SS---------S------------------
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-----------------------------------------------------------------------S--------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
-------------------------------------------------------SSSSSS-SSSSSSSSSSSSSSSSSS
SSSSSSSS----------S-----------------------------------------SS---S--------------
-------S-----------------------S------------------------------------------------
---------S-------------------------------------------------------------------S--
-S------------------------------S--S-SSS----------------------------------------
-------------------S-----------S----------------SS-SSSSSSSS---SS-SSSSSSS-S-SS-S-
--SSSSSSS-SSSSSS-SSS--SS-SSSSS-S-S-SSS-SSSSSSSSSSSS-SSSSS-S-SSS-SSSSSSSSSSS-SS-S
SS--SS-S-S-SS-S-S--S-S-SS-S-SSSS-SSS-S--SSSSS-SSSSSSSSS-SSS-SSS-SSSSS-S-SS-SSSSS
S-SSSS--S--SS-------------------------------------------------------------------
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-----------------------S-SSSS---S-SS--S-S-------SS-SSSSS-SS-SSSSSSSSSSSSSSSS-SSS
SS--S-SSSS----------------------------------------------------------------------
-------------S---------------------S---------------S----------------------------
-----------S-----------------S--------S------------------------S----------------
----------S-S------S------------------------------------------------S-S---------
----------------S-----------------------------------------S--------S------------
-----
>forward_400
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------------------------------------------------------------TAGGAAGAGGTGGAGCAGGG
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>reverse_4058
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---------------------------------------------------------GCATCAGCTGGCATTAGTGC---
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-----
