>input_sequence_74796
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-------------------------------------------------ATGAAGCTCTCCATGCAGTCGCTGGCCCGGA
AGCTCTCCATCCCGTCGCCCAAGCGGGGCAAGAAGCAGCAGCAGCAGGACGGCGGCGGCAGCGGCAGCGGCAAGCGGGGC
ATCTCCCGGAGCGAGGCGCCGTCGTTCGCGTCCGCGTCCTCCTCCT---CCACCTCGTCGTCCACCGAGGACGCGCTGCC
GCGGGCGTCCACGCCGCGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTGGGCC
ACGAGGAGCCGTCGGACGACGAGCTCGACGCCGTGGCGGCCATCGCGGCCGCCGGGGAGGCCGGCCCCGAGGACGAGCTG
ATGGAAGCGTTCAACGTGTTCGACGCCGACGGCGACGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCAT
CCTCGGCGGCGAGGCCGACGGGTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCT
TCGTCGGCTTCCAGGACTTCGCGCGCATGATGATGGTGTCGACCACC---GCGGCGGCCACCACATCGGCCGGCCCGAGA
TTCATGTGA-----------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G536600
ATTAATCGACCCCAAGTTAAACCTATCAAAGCCCTAAACCGAACCCTAACCAAAACCCTAAACCTAGTCTAACCGTAAGT
CAAACCCCAAAGCAAATCCTCGAAGTGTAAATTCATGCCTAAATCGATGATTACGACGATGCCTAAATCGGGGAAACAAG
GGCTTACCGCCATTGTCGAAGGGGTGATGAAGTCGGTGTTCGCTGGCGATGCTCGGCGCCGCCGGTGAGAGAGAGTGACG
GCGGGGAGAGGTGAGAGTGAGCAGTGAGAGAGGGGTGAGTGGAATTTATGGCAGCGCTCTGGGAGACAACACGGCATCTC
CTACTCGTCCCCGTGAATGCAGTCGTGTGCCTCCTTGCGCTCGCTCGCTCGGGTCTGGTTGGATGAAAATGGTCGATTCA
GTTGATTCTGTTCTTGAGCCGGTTCTCATTATAAGCAAATAAAATCCCTCTACTCCATTCTATAATCTATATATACAACT
TCATTCCAAAGCTCATGAAAAAAGAAAGATAACAAGCTAATGGGCAGTGCCA-----TCAGACTCTTTGTATATCTTGAA
GAAAGCCATTTC------CATCCAAATTGGACGGCTGGATAGGCACCCCAGAACAGAGAGCTAAGAGAAGGCACAAGGA-
---------GCCAGCCGCCGCAGCAAATCCCGGAGGGG---CC-CCTGCCAGAAACGGCCCCCACCATCCGTCGCACGCC
AG------------------------------------------------------------------------------
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-GATAAATCCGCAGCGCAGCGCACCCCAGGAAAAGAAAAGGCT-------------------------------------
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-------------------------------------------------GGGCGGGGCTAAAATACCCATGCAGAAGCAA
CCAACCAAGCGTACCGGACGCGAGCTCGACGACTGAAAAATCGGGAACCCCGGGACGGAGGAAGCTTCCGCGAAGCTCAC
TCCCGCCCCCGCTCCCCGT---------------------------------CCTCCGCCTCCCCTATTTATCGCTGCCT
CCCCCCTCCGTCTCCACCCACCCCACACATCCCCATCAATCCATCCTT----------------CCTCCCCTCCCTGCTG
CAT---------TCGTCTCCTCTCCATTGTTT-CTCTCTTCGAAGAAGGATGAAGCTCTCCATGCAGTCGCTGGCCCGGA
AGCTCTCCATCCCGTCGCCCAAGCGGGGCAAGAAGCAGCAGCAGCAGGACGGCGGCGGCAGCGGCAGCGGCAAGCGGGGC
ATCTCCCGGAGCGAGGCGCCGTCGTTCGCGTCCGCGTCCTCCTCCT---CCACCTCGTCGTCCACCGAGGACGCGCTGCC
GCGGGCGTCCACGCCGCGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTGGGCC
ACGAGGAGCCGTCGGACGACGAGCTCGACGCCGTGGCGGCCATCGCGGCCGCCGGGGAGGCCGGCCCCGAGGACGAGCTG
ATGGAAGCGTTCAACGTGTTCGACGCCGACGGCGACGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCAT
CCTCGGCGGCGAGGCCGACGGGTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCT
TCGTCGGCTTCCAGGACTTCGCGCGCATGATGATGGTGTCGACCACC---GCGGCGGCCACCACATCGGCCGGCCCGAGA
TTCATGTGAGCCAGCCCGTCGGTGG---------------------CTCCTCTGTTCCCGCTCTGTTCTGCTCGCCCCCA
CGCCCACGTTCCCGCGAAATTTCGATCGGCCGCGACGCATGGCGCTCAGATGTGTGATGCTCATTCGTTCCAGCTGCTTC
TTCTTCTTTTTGGCGCGCACCGTGATGAGAAATGCCATGCGGCAGCTAGCTCAAGTATAATCAGGATCACTCTGCTACTA
CTAGTCTTACTACGTACGTACTCCGAAAAGGAGAGCATCCGCTAGTTAAATCACGACCCTGTAAAATTTGTTGGAGAGCT
GGATCGATCGGTCGAGAGTGTATGCGTGTGCGTGTGTTGGCAATGAGAAATGCTTTGTTGCTTGGTTTCTTTACAACAAT
TGGTAG-----------GCTACTGCTAATATAAGTACGTAATCAGTTTAAGTGTGGCCT---------------------
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---------------------------------------GGAGGGGAAACCTGTTGGCGTTGCACGTGGAATGGTTGATG
ATTCCGGCGAGAGCACGACCGGAGGACCGGTGACGCCATGAATGAACGAGTGAGTGAATGAATGAATGATGCGCAACGTG
GCGACTGGAGACGCTCCGATGCTGCATGCACTCATGCTTGGCTTGTCCTTTTTCTCTGCTCTGCTCTGCTTCCTCTAATC
TAAGTAGGAGCGGCAATGCTACTAAC----CACGACGTGGCACCATTAGCACAAACATCACCAGAAGAACGATCAGATGC
TGT--------ATTCATTCAGACCACCGATTAGATTAGAT----------GCGCGAGCGAT-------------------
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------GTTTATTTTTGGATTCCACTATCATCTCATCACTGATATGATAGTGAGGGAACAATGCTGGCTGGGCTGGCGCC
ACTTGAAGGCCATTCAAAGCTGCTGCCGCGTACTAGTACCGCACTATGCACTGCCGATCTGGGGGGGAGCACATCGCATC
GCACCGGTTAATGGAGCTGCACAAATGGGGAGGGCGGTGCACGCGATGCGGCGGGGCCGAGGCCTTCACTTGCCGATGCT
TCATTCTCATGGAAATTCTGACGAGCCT
>chr3A_497
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----------------GAAAAATGAAAGATACCAAGCTACAGTGATCTAGCCTACTGTCAGGCCCTTTGTATATCTTGAA
GAAAGACATTTCCATTTCCATCCAAATTGGACGGCTGGATAGGCACCCCAGAACAGAG----AAGAGAAGGCACAAGGAA
CCAGCTCGAGCCAGCTGCCGCAGCAAATCCCGGAGGGGAGGCC-CCTGCCTGAAACGGCCCCCTCCATCCGTCGCAAGGC
AGGATAAATCCCGAAACTACTTTGCGCACGACACGGCGTGGACGATTCTTGCACGATGTGACATCGGATGGTGTCCTGTA
CTTTGCTTCTTCCCAGCGACGGTTTGATTAACAACGTCGTGCGTAAATCGGCTAGGATCCATCGTGTGTATAGCAACGTT
CGATAAATCCGCAGCGCAGCACACCCCAGGAAAAGATCGCGAAATTACTATGCAGACGACAATGTGGTGGACGATTCTCA
GACGACCTGGTGATCGATGGCTGCGCCCCACGTGACCTCAACTGATCGATGGCTGCTATAGCTTGTCGTCCACAGATCGG
CCACAATCCATCGTGTGTGTAGCAATCCTCGGAAAAGAAAAGGCCGGGCGGGCGGGGCTAAAATACCCATGCAGAAGCAA
CCAACCAAGCGTACCGGACGCGAGCTCGACGACTGAAAAATCGGCAACCCCGGCAAGGAGGAAGCTTCCGCGAAGCTCAC
TCCCCTCCCCGCTCCCCCGCCCTCCGCCTCCCCTATTTATCGCCGCCTCCCCCCTCCGCCTCCCCTATTTATCGCCGCCT
CCCCCCTCCGCCTCCACCCACCCCACACATCCCCATCAATCCATCCATCTTTCCTGCTACAATCCCATCCGCATTCATCT
CCTTTGAGTAGCTTCTCTCCTCCCGATTGTTTCCTCTGCTCGAA----GATGAAGCTCTCCATGCAGTCGCTGGCCCGGA
AGCTCTCCATCCCGTCGCCCAAGCGGGGCAAGAAGCAGCAGCAGCAGGA------------CGGCAGCGGCAAGCGCGGC
ATCTCCCGGAGCGAGGCGCCGTCGTTCGCGTCCGCCTCGTCCTCGT---CCACCTCGTCGTCCTCCGAGGACGCGCTGCC
GCGGGCGTCCACGCCGCGGTCGGTGCTCCCCGTGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTGGGCC
ACGAGGAGCCGTCGGACGACGAGCTGGACGCCGTGGCGGCCATCGCGGCCGCCGGGGAGGCCGGCCCCGAGGACGAGCTG
ATGGAGGCGTTCAACGTGTTCGACGCCGACGGCGACGGCCGCATCACTGCCGAGGAGCTCCGCGGCGTGCTGCTCGCCAT
CCTCGGCGGCGAGGCCGACGGGTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCT
TCGTCGGCTTCCAGGACTTCGCGCGCATGATGATGGTGTCCAC------GGCGGCGGCCACCACCTCGGCCGGCCCGAGG
TTCCTGTGAACCAACCCGTC----GACCCGCGACGCCAGA------CTCCTCTGTTCACGCTCTGTTCTGCTCGCCCCCA
CGCCCACGTTCCCGCGAAATCTCGATCGGCCGCGATGCATG-CGCTCAGATGTGCGATGCTCGTTTCGTTTCA--GCTTC
TTCTTCTTTTTGGCGCGCACCGTGATGAGGAATGCCATGCGGCAGCTAGCTCAAGTATAATCAGGATCACTATGCTACGA
CCAGTAGTCTACTACGTGCTAGTTATTAAATATCGA---------------------CCTGTAAAATTTGTCCGAGAGCT
GGATCGATC----GAGAGTGTGTGCGTGTGT-TGTGTTGGCAATGGGAAATGCTTTGTTGCTTGGTTT-TTTACAACAAT
TGGCCTTACTCGGGCCAGCTACTGCTAATATACTTACCTCCCGTCCTTTTTACTCCATGTCAAGTCAATCTTTGCAAAGC
TTAATCAAATTTATATTAAAAATATCGATATTTACAATACCAAATATAAAACTGCATTCCATAATGAATCTAACAATATT
AACTTGGCATGGATAAATTTGATCAAAGTAGAGATAATTTTGAATTCGGATAAAAGTTACTCCCTCAGTCATAAAATATA
AGAACATTTCTAACACTAGCATAATGTCCTTATATTCTGGGACAGATGAAGTACTAATTTAGTAATCTACTCCCTCCGTT
CCGAATTACTTGTTGCAGATGTGGATGTATCTAGATGTAGATACATTCATTTCTGTGACGAGTAATTTGAAACGGAGGGA
GTAGAATACAATTGTTTGGCTTTGAAAGTATTGAGGTCCGGAGCGGAAACCTGCTGGCGTTGCACGTGGAATGATTGATG
ATTCCGGCGAGAGCCCGACCGAG---CCGGTGCGGCCATGAATGT--------GTGAATGAATGAATGATTGGCAACGTG
GCGCCTGGAGACGCTCCGATGCTGCATGCACTCATGCTTGGCTTGTCCTC-TTCCCTGCTATGCT-TGCTTTCTCTAATC
TAAGTAGGAGCGGCATTGCTAATAACCACGCACGACGTGCCACCATTAGCACAAACATCGGGCAGGGCAGGGGATTTGTG
ATGCTTTATTCATTCATTCAGACCATCGATTAGATTAGATTAGATTAGATGCGCGAGTGATATTATCCTACGAAAGGAAA
CCCGGCACCGAACAGGTGTCAACAAAGCTCGAAATACTAGTATAACGGTGGCTGATTCTCGCTTAG-TACTTTTAGACAG
CTTCCCGTTTAATTTTGGATTCCACTACCATCGCATCGCTGATATGATAGTGAGGGAACAATGCTGGCTGGGCTGGC---
-CTTGAAGGCCATTCAAAGCTGCTGCCGCGTACTAGTACCGCACCAGGCACTGCCGATCT-GGGGGGAGCACATCGCATC
GCACCGGTTAATGGAGTTGCAGAAATGGGGAGGACGGTGCACG-------------------------------------
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>chr3D_532
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---------------------------------------------------A-----TGAGGCTCTTTGCACATCTTGAA
GAAAGTAATTTCCATTTCCATCCAAATTGGACGGCTGGATAGGCACCCCAGAACAGAG----AAGAGAAGGCACAAGGAG
CCAGCTCCAGCCTGCCGCCGCAGCAAATCCCGGAGGCCCCCCCTCCGGCCTGAGACGGCCCCCTCCATCCGTCGCAAGCC
AAGAA---------------------------------------------------------------------------
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----AAATCCGCAGCGCAGCACACCCCAACCCCA----------------------------------------------
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------------------------------GGAAAAGAAAAGGCT---------GGGCTAAAATACCCATGCAGAAGCAA
CCAACCAAGCGTACCGGACGCGAGCTCGACGACTGAAAAA----------------GGAGGAAGCTTCCGCGAAGCTCAC
TCCCCTCCCCGCTCCCCGTCCTCCTTCCTCGCCTATTTATCGCCGCCTCCCTCCTCCG----------------------
----------TCTCCACCCACCTCACACATCCCCATCAATCCATCTTT----------------CCATCCGCATTCATCT
CCTTTGAGCAGCTCCTCTCCTCTCCATTGTTT-CTCTGCTCGAA----GATGAAGCTCTCCATGCAGTCGCTGGCCCGGA
AGCTCTCCATCCCGTCGCCCAAGCGGGGCAAGAAGCAGCAGCAGCAGCA------------GGACGGCGGCAAGCGCGGC
ATCTCCCGGAGCGAGGCGCCGTCGTTCGCGTCGGCGTCCTCCTCCTCCACCACCTCGTCCTCCTCCGAGGACGCGCTGCC
GCGGGCGTCGACGCCGCGGTCGGTGCTGCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTGGGCC
ACGAGGAGCCCTCCGACGACGAGCTCGACGCCGTGGCGGCCATCGCCGCCGCCGGGGAGGCCGGCCCCGAGGACGAGCTG
ATGGAGGCGTTCAACGTGTTCGACGCCGACGGCGACGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTGCTGCTCGCCAT
CCTCGGCGGCGAGGCGGACGGGTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCT
TCGTCGGCTTCCAGGACTTCGCGCGCATGATGATGGTGTCCACCACGGCGGCGGCGGCCACCACCTCGGCCGGCCCGAGA
TTCCTCTGAACTAGCCCGTCGATGGATCCGCTACGCCAGGCTCCTCCTCCTCTGTTCCCGCTCTGTTCTGCTCGCCCCCG
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-------------------------CCGATTAGATTAGATTAGATTAGATGCGCGAGCGATATTATCCTAGGAAAGGAAA
CCCGGCACCCAACAGCTGTCAACAGAGCTCCAGA---TACTATAACGGTGGCTGATTTATTCTCGCTTATTTTTAGACAG
GTTCCCGTTTATGTTTGGATTCCACCATCAT-------------------------------------------------
------------------------------------------------CACTGGCTATTT-CGGGGAAGCACATCGCATC
GCACCAGTTAATGGAGTTGCACAAATGGGGAGGGCGGTGCACGCGATGCTACGCTGCCAGGGCCTTCACTTGCCAATGCT
TCATTCTCATGGAAATTCCGAC------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS------S--------S-------SS-S-SSS-SS-----------S------------------
-----S----------------------------------------------------SSSS------------------
--------------------------------------------------S------------S------------S---
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--------------------S---------------SSSS-SS-------------------------------------
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--------------------------------------------S--------S-S------------------------
----SS---------------------------------------------------------------------S----
------------------------------------------------------------------SS--SSSSSSSSSS
-S------------S----------------------SS-----SSSS--------------------------------
-------------------------------------------------SSSSSSSSSSSS---------------S---
---------------------------------------------------------------S----------------
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-----S--------------------------------------------------------------SS--S-------
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----------------------------------------S-----S-----------------S---------------
---S-----S-----------S----------------------------------------------------------
--------------------S--------------S-----S------------S-------S--SSS-SSSSSS-----
-----------------------------S-----------------------------------------S------S-
-S---SS-SSSSSSSSS-SSSSSSSSS--SS-SS-SSSSSSSSSSSSSSSSSSSSSS--------------SS-------
---------SSSS--------S--------SS-------------S----------------------S-----------
---SSS--------------------------SS---S-SSSSSSS--SSSSS-SSSSS---------------------
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-------------------------------------------S---------S-------------------S------
--------------S------SSSSS------SS----------SSSSSSSSS-----------------SS--------
---S---------------------------------------------SS---S-----S----S-----S--------
---------------S-----S-----------------S-------------------SSSSSSS-S-S-SSSSSSSSS
SSS-----------------------------------------------------------------------------
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--------------------------------S----S---------------------------------------SSS
S-------------------------------------------S-S-------------S-------------------
----------------S--------------------------------SS--SS---SS--------------S-----
------------------S---SSSSSS
>forward_329
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---------------------------------------------------------------------CACGGCATCTC
CTACTCGTC-----------------------------------------------------------------------
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>reverse_2330
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---------GGTCGAGAGTGTATGCGTGT---------------------------------------------------
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