>input_sequence_74759
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATGCTAAGAAGTGGATGGGCGAGG
AAGTCATGGTGGATTTCAAGAAGTACATCAAATGGCTGGACCAATTCAAAGTATGTGTGATTTTTAACTATTCTGTCCAT
TTTAAT--CGAAAACAAGTTTTGTTTATAAGGTGTTTCTTTCAGGAC--GTGGAGTATGGCCTGGATGAGCTTCAACATC
AGTGCTTCAGCGTGGAGAGCTATGACCATACCTTCCATCACTTCAACTTCACCGTTAAGATGAAGAAGCCAGACAG---T
GATTGGTCATCGACGCCCTATTTTGCTCAAGTGAAAGAGATCTATGGAAG-AAAATATTATACCTGCTACAAACTAAGCT
CATATGATGATGGTATGTGTATATATATGCCTTTCTTGATTTCTCTTTCGTTCT--CTAAATATGGATCATTTTAACTTC
GTTCGTTGCAAAATCACGGTTTTGATCTAGTATTGAATTGCATATCGTTGTTTAGGTCACTGCTACGCATGCATAAATCA
AGGAATGCATGCACTGAAGCACCCTATTGGTGAGTTCGGGTACGACAGTGGCTATCCTGACACGGGGTCCCCCTTCATTT
ATCTTAGTGATGATGAATAA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G161700
TTGAGGAGGAGAAGCTTACGGATGAATCGGATCCTTGGTATGTAATGATGATTTTCCTTTTGTTCATCCCGTGCTATATT
TAGTTTGTAGTTTGTTAGTTTTAAATGCAAAGCCTCAGAGCACTAAAGTTTTACTTGTATATGCATGGATCAAATAAGGG
GAAAACAACAACAGAACAACTTGTTATTACTTATTAGTGCAGCCAGCGTGGGGTGTTGTAGACGCCATGTCTGCAGGAGG
CTGGATAGACATATACCAGCTGAGAGAATGTTTGAACTAAGTAAGAAAGAATAAGGGTTTGACATGGCCTCTCTGCATTG
CACTGTGCAGGGGTAAGGCCTCCCTCGTGTAATCAGAGTTTACAGTTATGCTGGGGTTACCAGCTTACAATAAGGTGTAC
AAAGACACTGTAGCCAGCAGCACCCAGGATAGGAACAGAAACTAACAGCACACTCCCAGACTCACACCGAACAGCATAAG
CTAGATCACCAGGCGGAGCACACAGAAAACAACAGGCACATCAGTGAGATGCACAGGCGGAGCTCAATGCTATTGCACAG
TTTTTAAGTATGCATAGCATAACATTTTTGAAGTA---------------------------------------------
---------------------------------------TGCATAGCATAACATTTGCTATATATTGCCTCTTAGGCTCA
----TGAG----GTGTGCGGATTATTATTTTGC-ATTTTCTTGATCCTTTGGG---TTTGTTCTGATTCATGGCACAAGA
ATATCATGAGATACTAAAGTACTTGGCCGAACATAGATATACTGACGTCGTGGAGGCTATGATTGCCGCTAGTCATGGCT
TTAGCAACCCGGCCCAGCATAAACTGGATGCTCAAGCATTTTGGTCATCAGGAGAGGAATTAAAATTTCCTGAAGTCTCC
AAGTCCTTTGCCTCTCCAACAGAGAATTCAGTGCAGTATGTGTCCTTTATGATTTTCTTATAAACTTTTGAAGCATATGC
AGCAGTTTTAATGTACTGTTGTAGGGGAGAACCGTCTAGCAAAGAAATCATAGAGAATGCTAAGAAGTGGATGGGCGAGG
AAGTCATGGTGGATTTCAAGAAGTACATCAAATGGCTGGACCAATTCAAAGTATGTGTGATTTTTAACTATTCTGTCCAT
TTTAAT--CGAAAACAAGTTTTGTTTATAAGGTGTTTCTTTCAGGAC--GTGGAGTATGGCCTGGATGAGCTTCAACATC
AGTGCTTCAGCGTGGAGAGCTATGACCATACCTTCCATCACTTCAACTTCACCGTTAAGATGAAGAAGCCAGACAG---T
GATTGGTCATCGACGCCCTATTTTGCTCAAGTGAAAGAGATCTATGGAAG-AAAATATTATACCTGCTACAAACTAAGCT
CATATGATGATGGTATGTGTATATATATGCCTTTCTTGATTTCTCTTTCGTTCT--CTAAATATGGATCATTTTAACTTC
GTTCGTTGCAAAATCACGGTTTTGATCTAGTATTGAATTGCATATCGTTGTTTAGGTCACTGCTACGCATGCATAAATCA
AGGAATGCATGCACTGAAGCACCCTATTGGTGAGTTCGGGTACGACAGTGGCTATCCTGACACGGGGTCCCCCTTCATTT
ATCTTAGTGATGATGAATAATCAGATCTCGAGTGATGACAGTGTGTTTCAGTCGATAATGGGATAGTTACAT--------
-----GTTACATCTTCTGATCTGCATGTAGTTCAGTATTTAATTATTCTCGATACTAAATGTTTACTCAGGAGAACAATT
GTGAATATGTAGTACAATTTTGAATTATGTACTATTGTGATATGTAGATGTTTCTTTTATCAGAAATTTGTACTCTCTCT
GTCTCCAAAAAGGACTATAAATTTTGTCTAAGTCAAACAGTACAATATTTTACTAAATATGTAGAAAATTTTTATTCAAA
AAATATAGAAAAAACTACCACAACTACAATGCAAAATTAGTACCAATAAGTACACAGTAAAAACATTCTTACTACATTAT
ATGTATTCAGTCTTGTAGTTGTTGATTCTGCTTTTTTACAAACTTGGTCAGATTTTACACCATTTGATTTGTGAAAAAAT
TATTATAAGCCTTCTTTTCGAGGACGGAGGGTGTTTTACTCAAACACCAATATTACAGTTCATGCGCCCTCAAAAAAAAT
ATTACAGTTCATGCGACATAGAACCATACCACCAGGTCCAAAATTAAGGCGTACGGGTATGTGACATTCAGTTTTTTTCC
CAAATCAACAATTCCCCTTTCTTTGGATGAGGGAGCTTGGCCAAGAAAAACTGCTTCGACATATCATTTTTCCCTAGTAC
TCCCTCCGATTTAATTGTCTAATCTTTGGTACAAGGTTGTACTAAAACTGAGACAAATAATTCGGATCGGCGGGAGTAGT
TTATTAGTGATCATCATTAAATCGCAGGATGTCCTATATGACGCATTATGCGCCAAATAGCAATCCGACGCACAGGAAAG
CTCCTGATTGAGTCGGCCCATATAGCTAGCAGCGAAACTCTATAGCAAGAAACCTGAGGACCAGACCCAATCGGAAGAAC
AACCGTAGCACCCGGCATAACAGGAATGATCCGAGGCAAACATACAGATAGACAAGATGAACAAGCCCGGCAG
>chr1B_539
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGAGCTCAATGCTCTTTTACAG
TTTTTAAGTATGCATAGCATAACATTTTTTAAGTA---------------------------------------------
---------------------------------------TGCATAGCATAACATTTGTTGTATATTGCCTCTTAGGCTCA
----TGATTGATGTGTGCGGATTATTATTTTGC-ATTTTCTTGATCCTTTGGG---TTTGTTGTGATTCAGGGCACAAGA
ATATCGTGAGATACTAAAGTACTTGGCCGAACATAGATATACTGACGTCGTGGAGGCTATGATTGCCGCTAGTCATGGCT
TTAGCAACCCGGCCCAGCATAAACTGGATGCTGAAGCATTTTGGTCATCAGGAGAGGAATTAAAATTTCCTGAAGTCTCC
AAGCCCTTTGCCTCTCCAACAGAGAATTCAGTGCAGTATGTGTCCTTTATGATTTTCTTATAAACTTTTGAAGCATATGC
AGCAGTTTTAGTGTACTGTTGCAGGGGAGAACCGTCTACCAAAGAAATCATTGAGGATGCTAAGAAGTGGATGGGCGAGG
AAGTCATGGTGGCTTTCAAGAAGTACATCAAATGGCAGGACCAATTCAAAGTATGTGTGATTTTTAACTATCCTGTCCAT
TTTAAT--CGAAAACAAGTTTTGTTTATAAGGTGTTTCTTTCAGGAC--GTGGAGTATAGCCTGGATGAGCTTCAACATC
AGTGCTTCAGCGTGGAGAGCTATGACCATACCTTCCATCACTTCAACTTCACCGTTAAGATGAAGAAGCCAGACGG---T
GATTGGTCATCGACGCCCTATTTTGCTCAAGTGAAAGAGATCTATGGAAG-AAAATATTATACCTGCTACGAACTAAGTT
CATATGATGATGGTACGTGTATATATATGCCTTTCTCGTTTTCTCTTTCGTCGTAACTAAATAGGGATCATTTTAACTTT
GTTTGTTGCAAAATCACGGTTTTGATCTAGTATTGAACTGCATATCGTTGTTTAGGTCACTGCTACGCGTGCATAAATCA
AGGAATGCATGCACTGAAGCACCCTATTGGTGAGTTCGGGTACGACGGTGGCCATCCTGACACGGGGTCCCCCTTCCTTT
ATCTTAGTGACGATGAATAATGAGATGTCGAGCGATGACGGTGTGTTTCAGTCAATGACCGA------------------
--ATGGTTACATCT--TGATCTGCATGTAGTTCAGTATTTAATTATTCTTAATACTGAACGTTTACTCAGGAGTCGCCGT
GTT----TGTAGTACAATTGTGAATTATGTACGTAGGTGTTTT-----TTTTTCTCGGATCAGAAGTTTGTA----CTCT
GTCTCCAAAAAGGGCTATAAATTTTG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr1D_539
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGAGCTCAATGCTCTTTTACAG
TTTTTAAGTATGCATAGCATAACATTTCGCCATGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCCAAC
TTGTTTGGGACTAAAGGCTTTGTTGTTGTTGTTGTTGTTTGCATAGCATAACATTTGTTGTATATTGCCTCTTAGGCTCA
----TGATTGATGTGTGCGGATTATTATTTTGC-ATTT-CTTGATCCTTTGGG---TTTGTTGTGATTCAGGGCACAAGA
ATATCGTGAGATACTAGAGTACTTGGCCGAACATAGATATACTGACGTCGTGGAGGCTATGATTGCCGCTAGTCATGGCT
TTAGCAACCCGGCCCAGCATAAACTGGATGCTGAAGCATTTTGGTCATCAGGAGAGGAATTAAAATTTCCTGAAGTCTCC
AAGTCCTTTGCCTCCCCAACAGAGAATTCAGTGCAGTATGTGTCCTTTATGATTTTCTTATAAACTTTTGAATCATATGC
AGCAGTTTTAATGTACTGTTGCAGGGGAGAACCGTCTACCAAAGATATCATTGAGAATGCTAAGAAGTGGATGGGCGAGG
AAGTCATGGTGGCTTTCAAGAAGTACATCAAATGGCAGGACCAATTCAAAGTATGTGTGATTTTTAACTATTCTGTCCAT
TTTAAT--CGAAAACAAGTTTTGTTTATAAGGTGTTTCTTTCAGGAC--GTGGAGTATAGCCTGGATGAGCTTCAACATC
AGTGCTTCAGCGTGGAGAGCTATGACCATACCTTCCATCACTTCAACTTCACCGTTAAGATGAAGAAGCCAGACGGTGAT
GATTGGTCATCGACGCCCTATTTTGCTCAAGTGAAAGAGATCTATGGAAG-AAAATATTATACCTGCTACGAACTAAGTT
CATATGATGATGGTACGTGTATATATATGCCTTTCTCGTTTTCTCTTTCGTCGTAACTAAATATGGATCATTTTAACTTC
GTTTGTTGCAAAATCACGGTTTTGATCTAGTATTGAATTGCATATCGTTGTTTAGGTCACTGCTACGCGTGCATAAATCA
AGGAATGCATGCACTGAAGCACCCTATTGGTGAGTTCGGGTACGACGGTGGCCATCCTGACACGGGGTCCCCCTTCATTT
ATCTTAGTGACGATGAATAATCAGATGTCGAGCTATTACGGTGTGTTTCAGTCAATGACGGG------------------
--ACGGTTACATCTTCTGATCTGCATGTAGTTCAGTATTTAATTATTCTTGATACTGAACGTTTACTCAGGAGTCGCCGT
GTT----TGTAGTACAATTGTGAATTATGTACGTAGATGTTTT-----TTTTG---GGATCAGAAATTTGTA----TTCT
GTCTCCAAAAAGGGCTATAAATTTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3A_580
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TAACAAATTTTCAATA---------------------------------------------
---------------------------------------TGCATGACAAAATGTTTGCTGTATATTGTTTCTTAGGCTCA
----TGTGTGTGG---------TATTATTCTGCAATTT-GTTCATCCTTTGGG---TTTTTTCTGATTCAGGGCACAAAC
ATGTCGTGATATACATAAGAACTTGGAAGAACATACATACACCTGTATGGTGGAGGCTATGATTGCAGCTAAACATGGCT
TTAGCAACCCGGCCCAGCATAAACTGGATGCTCAAGCATTTTTGGCATCAGAAGGGGCATTTGTATCTCCTGAAGTCCCT
GAGTCCTTTGCCTCTCCAAGAGAGAATATAGCGCAGTATGTTCTGA-TATGATTTTCATATAAAATTTTGAAGC--ATGC
AACAATTTTAATGTATTATTGCAGGGGTGAAGTGTCTACCGAAGAAATCATTAAGAATGGTAAAAAGTGGATGGGTGAGG
AAGTCATGCTGGCTTTTGAGAAGTACAAGGAAGGAAAGAGCCAATTCGAAGTACGTGTGGTTTCCTGCTATTTTATTC--
TTTTAT--CTGAAAGCAAGTTTGTTTATAAGGTGCTTTTTCAGGACATGGTGGATTATGGCCTAGATGAGCTTCAACATT
AGTGCTTCAGCATGGATAGCGATGGCCATACCTTCCATCACTTCAACTTCACCGTTAAGATGAAGAAGTCAGACGG---C
GATTGGTCATCCACGCCCTTTTTTGTTGAAGTGAAAGAGATCTACGGAAG-AAAATATTATTCCTGCTACGAACTAAGTT
CATATGATGATGGTATGTG----------CCCTTCCTGTCTTCTCTTTCGT-CTTATTAAATATGAATCTTGTTTAGTTT
GCTTGCTGCAAAATTACGGTTTTG-------------------ATCTTTGTTTAGGTCACTGCAACGCATGCAAAAATCA
AGGAATGCATGCACTAAAGCACCCTATTTATCTAATGGGGTATGCCAGTGGTCATGCTGATATGGAGTTCTCCTTCATTT
ATCTTAGTGATGACGAATAATCTGATCTCGAGTGGGTGACAGT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3D_580
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TAACAAATTTTCAATA---------------------------------------------
---------------------------------------TTCATGGCATTACGTTTGCTGTATATTGCTTCTTAGGCTCA
----TGTGTGTGG---------TATTATTCTGCATTTT-GTTGATCCTTTGTT-TTTTTCTTCTGATTCAGGACACAAAC
ATGTCGTGATATACATAAGTACTTGGAAGAACATACATACACTTGTATGGTGGAGGCTGTGATTGCCGCTAAACATGGCT
TTAGCAACCCGACCCAGCATAAACTAGATGCTCAAGCATTTTTGGCATCAGAAGGGGCATTTGAATCTCCTGAAGTCCCT
GAGTCCCTTGCCTCTCCAAGAGAGAATATAGCGCAGTATGTTATGA-TATGATTTTCGTATAAAATTTTGAAGC--ATGC
AACAATTTTAATGTATTGTTACAGGGGTGAAGTGTCTACCGAAGAAATCATTGGTAATGGTAAAAAGTGGATGGGTGAGG
AAGTCATGTTGGCTTTTGAGAAGTACAAGGAAGGAAAGAGCCAATTCAAAGTACGTGCGGTTTCCTGCTATTTTGTCC--
TTTTAA--CCGAAAGCAAGTTTGTTTATAAGCTGTTTT-TCAGGACGTGGTGGATTATGGCCTAGATGAGCTTCAACATC
AGTGCTTCAGCATGGAGAGCGATGACCATACCTTCCATCACTTCAACTTCACCGTTAAGATGAAGAAGTCAGACGG---C
GATTGGTCGTCCACGCCCTATTTTGCTGAAGTGAAAGAGATCTATGGAAG-AAAATATTATTCCTGCTACGAACTAAGTT
CGTATGATGATGGTATGTG----------CCCTTGCTGTCTTCTCTTTCAT-CTAATTAAATATGAATCTTGTTTAGTTT
GCTTGCTGCAAAATTACGATTTTG-------------------ATCTTTGTTTAGGTCACTGCAACGCGTGCAAAAATTA
AGGAATGCATGCACTGAAGCACCCTATTTGTGTAATGGGGTATGCCGGTGGTCATGCTGACATGGAGTTCTCCTTCATTT
ATCTTAGCGATGACGAATAATCTGATCTCGAGT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3B_580
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TAACAAATTTTCAACA---------------------------------------------
---------------------------------------TGCATGGCATACTGTTTTCCATATATTGCTTCTTAGGCTCA
TTTGTGTGTGTGG---------TATTATTCTGCATCTT-GTTGATCCTTTGGGGTTTTTTTTCTGTTTCAGGGCACAAAC
ATGTCGTGATATACATAAGTACTTGGAAGAACACACATACACTTGTATGGTGGAGGCTATGATTGCCGCTAAACATGGCT
TTAGTAACCCGGCCCAGCATAAATTGGATGCTCAAGCATTTTTGGAATCAGAAGGGGCATTTGAAGCTCCTGAAGTCCCT
GAGTCC------TCTCCAAGAGAGAATATAGCACAGTATGTTCTGA-TATGATTTTCATAT-AAATTTTGAAGC--ATGC
AACAATTTTAATGTACTGTTGCAGGGGCGAAGTGTCTACTGAGGAAATCATCAAGAATGGTAAAAAGTGGATGGGTGAGG
AAGTCATGTTGGCTTTTAAGAAGTACAAGGAAGGAAAGAGCCAATTCAAAGTACGTGCGGTTTTCTGCTATTTTGTCC--
TCCTATAACTGAAAGCAAGTTTGTTTATAAGGTGTTTTTTCAGGACGTGGTGCATTATGACCTAGATGAGCTTCAACATC
AGTGCTTCAGCATGGAGAGCTATGATCATACCTTCCATCACTTCAACTTCACCGTTAAGATGGAGAAATCAGGCGG---C
GATTCGTCATCGACGCCCTTTTTTGCTGAGGTGAAAGAGATCCATGGAAGAA-AATATTATTCCTGCTACGAACTAAGTT
CTTATGATGATGGTATGTG----------CCCCTGCTGTCTTCTCTTCCATTCTAATTAAATAAGGATTGTGTTTAGTTT
GCTTGCTGCAATATTATGTTTTGATGTCTTGAGCTATG----TATCTTTGTTTAGGTCACTGCTATGCGTGCAAAAATCA
AGGAATGCATGCACTGAAGCACCCTATTTGTCTAATGGGGTATGACAGTGGTCATGCTGATATGGAGTCCCCCTTCCTTT
ATCTTAGTGATGACGAATAATCTGATCCCGAGTGGTGACAGTGTTTGC--GTCGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3A_594
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TA---------------------------------------------
---------------------------------------TGCATGGCATAATGTTTGTTGTATATTGCTTCTTAGGCTCA
--TGTGTGTGTGG---------TATTATTCTGCATTTT-GTTGATCCTTTGGGA--TTTCTTATGATTCAGGGCACAAAA
ATGTCGTGATATGCGGAAGTACTTGGAAGAACATACATACACTTGTATGGTGGAGGCTATGATTGCCGCTGAACATGGCT
TTAGCAACCCGGCCCAGCATAAACTGGATGCTGAAGCATTCTTGGCATCAGAAGGGGCATATGAAGCTCCTGAAGTCCCT
GAGTCCTTTGCCTCTACAAGAGAGAATATAGCGCAGTATGTTCTGA-TATGATTTTCATAT-AAATTTTGAAGC--ATGC
AACAATTTTAATGTATTGTTGCAGGGCTGAAGTGTCTACGGAAGAAATCATTGAGAATGGTAAAAAGTGGATGGGTGAGG
AAGTCATGTTGGCTTTTAAGAAGTACAAGGAAGGAAAGAGCCAATTCAAAGTACGTGCGGTCTTCTGCTATTTTGTCC--
TCCTA--ACTGAAAGCAAGTTTGTTTATAAGGTGTTTTTTCAGGACGTGGTGCATTATGGCCTAGATGAGCTTCAACATC
AGTGCTTCAGCATGTTGAGCTATGATCACACCTTCCATCACTTCAACTTCACCGTTAAGATGGAGAAATCAGGCGG---T
GATTCATCATCAACGCCCTTTTTTGCTGAGGTGAAAGAGATCCATGGAAGAAAAATATTATTCCTGCTACGAACTAAGTT
CGTATGATGATGGTATGTG----------CCCCTGCTGTCTTCTCTTCCATTCTAATTAAATAAGGATTGTGTTTAGTTT
GCTTGCTGCAAAATTACGTTTTGATGTCTTGAGCTATG----TATCTTTGTTTAGGTCACTGCTACGCGTGCAAAAATCA
AGGAATGCATGCACTGAAGCATCCTATTTGTCTAATGGGGTATGACAGTGGTCATGCTGATACGGAGTCCCCCTTCCTTT
ATCTTAGTGATGACGAATAATCTGATCTCAAGTGGTGACGGTGTTTGC--GTCGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3B_632
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GCTCA
--TGTGTGTGTGG---------TATTATTTTGCATTTTTGATCATCCTTTGGGG--TTTCTTATGATTCAGGGCACAAAA
ATGTCGTGATATGCGGAAGTACTTGGAAGAACATACATACACTTGTATGGTGGAGGCTATGATTGCCGCTGAACATGGCT
TTAGCAACCCGGCCCAGCATAAACTAGATGCTCAAGCATTCTTGGCATCAGAAGGGGCATTTGAAGCTCCTGAAGTCCCT
CAATCCTTTGCCTCTACAAGAGAGAATATAGCGCAGTATGTTCTGA-TATGATTTTCATAT-AAATTTTGAAGC--ATGC
AACAAATTTAATGTATTGTTGCAGGGCTGAAGTGTCTACGGAAGAAATCCTTGAGAATGGTGAAAAGTGGATGGGCGAGG
AAGTCATGTTGGCTTTTAAGAAGTACAAGGAAGGAAAGAGCCAATTCAAAGTACGTGCGGTTTTCTGCTATTTTGTCC--
TCCTA--ACTGAAAGCAAGTTTG-TTATAAGGTGTTTTTTCAGGACGTGGTGCATTATGGCCTAGATGAGCTTCAACATC
AGTGCTTCAGCATGGAGAGCTGTGATCACACCTTCCATCACTTCAACTTCACCATTAAGATGGAGAAATCAGGTGG---C
GATTCGTCATCGACGCCCTTCTTTGCTGAGGTGAAAGAGATCCATGGAAGAA-AATATTATTCCTGCTACGAACTAAGTT
CGCATGATGATGGTATGTG----------CCCATGTTGTCTTCTCTTCCATTCTAATTAAATAAGGTTTGTGTTTAGTTT
GCTTGCTGCAAAATTATGTTTTGATGTCTTGAGCTATG----TATCTTTGTTTAGGTCACTGCCACGCGTGCAAAAATCA
AGGAATGCATGCACTGAAGCACCCTATTTGTCTAATGGGGTATGACAGTGGTCATGCTGATATGGAGTCCCCGTTCCTTT
ATCTTAGTGATGATGAATAATCTGATCTCGAGTGGTGACGGTGTTTGC--ATCGACAACAGTGTGAAGTATGTGGTTTGT
TTATGGTTACATCTTCTGATCTGCATGTAGTCCAGTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3B_632
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GCTCA
--TGTGTGTGTGG---------TATTATTTTGCATTTTTGATCATCCTTTGGGG--TTTCTTATGATTCAGGGCACAAAA
ATGTCGTGATATGCGGAAGTACTTGGAAGAACATACATACACTTGTATGGTGGAGGCTATGATTGCCGCTGAACATGGCT
TTAGCAACCCGGCCCAGCATAAACTAGATGCTCAAGCATTCTTGGCATCAGAAGGGGCATTTGAAGCTCCTGAAGTCCCT
CAATCCTTTGCCTCTAGAAGAGAGAATATAGCGCAGTATGTTCTGA-TATGATTTTCATAT-AAATTTTGAAGC--ATGC
AACAAATTTAATGTATTGTTGCAGGGCTGAAGTGTCTACGGAAGAAATCCTTGAGAATGGTGAAAAGTGGATGGGCGAGG
AAGTCATGTTGGCTTTTAAGAAGTACAAGGAAGGAAAGAGCCAATTCAAAGTACGTGCGGTTTTCTGCTATTTTGTCC--
TCCTA--ACTGAAAGCAAGTTTG-TTATAAGGTGTTTTTTCAGGACGTGGTGCATTATGGCCTAGATGAGCTTCAACATC
AGTGCTTCAGCATGGAGAGCTGTGATCACACCTTCCATCACTTCAACTTCACCGTTAAGATGGAGAAATCAGGTGG---C
GATTCGTCATCGACGCCCTTCTTTGCTGAGGTGAAAGAGATCCATGGAAGAA-AATATTATTCCTGCTACGAACTAAGTT
CGCATGATGATGGTATGTG----------CCCATGTTGTCTTCTCTTCCATTCTAATTAAATAAGGTTTGTGTTTAGTTT
GCTTGCTGCAAAATTATGTTTTGATGTCTTGAGCTATG----TATCTTTGTTTAGGTCACTGCCATGCGTGCAAAAATCA
AGGAATGCATGCACTGAAGCACCCTATTTGTCTAATGGGGTATGACAGTGGTCATGCTGATATGGAGTCCCCGTTCCTTT
ATCTTAGAGATGATGAATAATCTGATCTCGAGTGGTGACGGTGTTTGC--ATCGACAACAGTGTGAAGTATGTGGTTTGT
TTATGGTTACATCTTCTGATCTGCATGTAGTCCAGTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3D_1000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AATGGTAAAAAGTGGATGGGTGAGC
AAGTCATGTTGGCTTTTAAGAAGTACAAGGAAGGAAAGAGCCAATTCAAAGTATGTGCGGTTTTCTGCTATTTTGTCG--
TCCTA--ACTGAAAGCAAGTTTGTTTATAAGGTGTTTTTTCAGGACGTGGTGCATTATGGCCTAGATGAGCTTCAACATC
AGTGCTTCAACATGTTGAGCTATGATGACACCTTCCATCACTTCAACTTCACC-TTAAGATGGAGAAATCAGGCGG---C
GATTCGTCATCGACGCCCTTTTTTGCTGAGGTGAAAGAGATCCATGGAAGAA-AATATTATTCTTGCTACGAACTAAGTT
CGTATGATGATGGTATGTT----------CCCCTGCTGTCTTCTCTTCCATTCTAATTAAATAAGGATTGTGTTTAGTTT
GCTTGCTGGAAAATTATGTTTTGATGTCTTGAGCTATG----TATCTTTGTTTAGGTCACTGCTACGCGTGCAAAAATCA
AGGAATGCATGCACTGAAGCACCCTATTTGTCTAATGAGGTATGACAGTGGTCATGCTGATATGGAGTTCCCCTTCCTTT
ATCTTAGTGATGACGAATAATCTGATCTCGAGTGGTGACGGTGTTTGC--GTCGACAATGGTGTGAAGTATGTGGTTTGT
TTATGGTTACATCTTCTGATCTGCATGTAGTCCAGTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--SS----
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------S------------S----------------------------
------------S-----------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------------------------------------------------------------------S-------S-
--------------------------------------S-----------------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------S-SSSSSSSS--------
-------------------------------------------------S------S--S-------------SSSSSS-
--SSSSS------------S------------SSSS---S-S-SSSSS-S-----SSS--------------SSSS----
-------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_468
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CACACTCCCAGACTCACACC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_2168
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AGCCTTCTTTTCGAGGACGG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
