>input_sequence_74748
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-----------------------------------------------------------------------ATGATTTCG
AGGTCTCCTAGCCTCTTCCAGATCGGCGAGGGAGAGGCCCAGGATCAGGATCAGGATCAGGCGGGGACGTCAACAATGGC
GACCGCCGGCGAGCTCGTCGGGCTCCGGCTGATCATACAGCCCTCGCCGAGGCGACAACAACGGCCGGCGCTGGCCGTCC
TCAGGAGGTCGTCGGTGAGGTCCGCCGCTGCCGACCTACAGGAGAGCAGCGGCTGCCGGCCATTCCTGGGCCTTGAGTTC
CTGAAGTGCTGCCTCTGCTGCTGCAAGAAGATCGACGGCGACATGGACGTCTTCGTGTACAAGTAAGAAAGATCAGATAT
GCACCCTCCTCATTCAATCTCTATGCTTATTGTTACTTGGCTTGAGCTGAGATTCTTACGGTTCTTGGGATTATTTCTGC
AGGGGAGAGCAAGCCTTCTGCAGCGCCGAGTGCCGGTCTCAGCAGATTGCGAGGGAGGAGCGGCGGGAGATCGAGATCCT
GGTCAGGAAGCGCCGTGACGCGTTCCACAGCCGCCGTGCAGCGCCGGGCAAGACGATCGGAGGACCGGACGGGCACGCGA
GGGTGCAAATATCAAGTTTTTGCTAG------------------------------------------------------
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>chr4A_1_TraesCS4A01G005200
TTATACCGTTGACAGTTGCACTGGCAAGGGAGGGAAG-AGCGGAACTAGTGAGGGA-GGGAATAGCAACACCGGTAGTGT
GAAATAAGGCGCAAGAGGATGTAGATCTAGAGGGTGAAGGAGGCGTGAGGTAGCGACTTACCTTCTAAGGATAGGATAAC
TAGCTCCAACAGAATATTGTATGATTAACACTAGTTGAAAAGTGATTCTAGAGTGATTTCTTTCATGGTGGGTAATATAA
TAAACTAGTAATCTCTTTGTAAAGAAATATAAGATCATTTAGATAGTGATTTAAACGGTCTTATATTACAG------GGG
AGTATCATGCACATGGCACTATTCTACGAAACTTACCTCCCCAATGCATAAGAGTATCATACATTTCAGCAAAATTTCAT
CGGTCGGCGCAGATACCGGAGAGATCTTCCGAAGGAAAAAATGCACGGTATCATACACTTCAGCAAAATGTAATCGTTCG
ATGCAGACACCGGGGAGAATTTTTGTTGAAAAAGAAACTTCAGCACGTTGTAACCGCTGATTTCTTATCTACTGTGGGCA
CCGAAGGAGACATCTGAATTATTGTAAGCGACAGGAGAGACACGTC-TTGCTCCCTATCACAATAAATAAAGATAGCGTC
CACATGTAAGTCGTGACTCATTAGGGTCATCTTATCTGTACTATGCGGCACTGTGCCACGGCGCTGCAAACTTTTTCCAT
GCTCCTGCGCCATGTGTAGCATGCGGGCGAATATTGTACGTACGA-CAAGCCTTTCTTTTTTAGCACTGGCAG------A
GACAGCCTCACTTTTCGCGATGCCAACAAACCAAACTAAAATACACGCGTGCAAGCTTGGCATCGCGTCTCTATATAACC
-ATCAACAGCTCG--------------CCATACTTCTCCATTGCCATTGTCGTTCTTCTCAGTTCTCACAGGAATTAACC
CCTGCGGTTTCAAGGATCGAGCACGTATAAACCACGAGCAAGCATCTCTAAAAACTTGTTGTCTCGCCGGGATGATTTCG
AGGTCTCCTAGCCTCTTCCAGATCGGCGAGGGAGAGGCCCAGGATCAGGATCAGGATCAGGCGGGGACGTCAACAATGGC
GACCGCCGGCGAGCTCGTCGGGCTCCGGCTGATCATACAGCCCTCGCCGAGGCGACAACAACGGCCGGCGCTGGCCGTCC
TCAGGAGGTCGTCGGTGAGGTCCGCCGCTGCCGACCTACAGGAGAGCAGCGGCTGCCGGCCATTCCTGGGCCTTGAGTTC
CTGAAGTGCTGCCTCTGCTGCTGCAAGAAGATCGACGGCGACATGGACGTCTTCGTGTACAAGTAAGAAAGATCAGATAT
GCACCCTCCTCATTCAATCTCTATGCTTATTGTTACTTGGCTTGAGCTGAGATTCTTACGGTTCTTGGGATTATTTCTGC
AGGGGAGAGCAAGCCTTCTGCAGCGCCGAGTGCCGGTCTCAGCAGATTGCGAGGGAGGAGCGGCGGGAGATCGAGATCCT
GGTCAGGAAGCGCCGTGACGCGTTCCACAGCCGCCGTGCAGCGCCGGGCAAGACGATCGGAGGACCGGACGGGCACGCGA
GGGTGCAAATATCAAGTTTTTGCTAGTTA--ATTAGATC----CTTGCTGTACTTGCAGTGAGCAAGTGACAAACGAAGG
AGAGTAAATTGTAGAAAACCATCATTTTAAAGGTTAGGTTTGCAAAAAATACTAAGATACATTTTCTCTACACAAAACAC
CATATCTTGCGTAATGGTTTTGTAAAAACCATCGATCGGCGAATCTGACCCTGTTAAATGAGTTTATGACAGGTGGGGCC
CACCAGTTAGACTGACGTGGCACCGCTTAACATCTCACATGTAACGGTGATGTTTGGTAGTATTATTATCATCATGTGTG
GCCCTATGGGGTCCACATGTCATTGGAAGAAAAAAAGCGTTCATCTTA-----------CCGCCACCCGTCCTGAGCCGT
GGCAGACGCACGCCGTCGGCCGTT--------------------------------------------CCAACCCCGGCC
ACGGCAGAGGCCCCTCGTTGTCGTTGTCGCACACCAAGGGCGAGGCAAAGAGGACGCCGCCTGTCCGCCCGGCTAAGGAG
CGGCCTGTCGCCATGCGCCGGTGGGTCCCCCCGTGCCCGGCCGAGGAGCGGCCTGCCGCCATGCGCTGGTGGGTCTTGGT
ATTTTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGATAGACGCA
TCCCCGCTGATTGCACACCTGAAGCCCAGACTTGTCCGACAATGTGGCTCGCACGCGAGCGTCCGTAGGAAGGAGCACAC
ATGCGTCCCTTGCGGCGGGTGGGGCCGCACCTAAACTCCGACGGGCG
>chr4D_1
TTATACCGCCGACAGTTGCACTGGCAAGGGAGGGGAAAAGCGGCACTAGTTAGGGAGGGGAATAGCAACGCTGGTAGAGT
GAAATAAGGCGCACGAGAATGTAGATCTAGAGGGTGAAGGAGGCGTGAGGCAGTGACTTACTTTCTGAGGATAGGATAAT
TAGCTCCAACAAAATATTGTATGATAAACAGTAGTTGAAAAGTGATTCTAGAGTGATATCTTTCATGGTGGGTAATATAA
TAAACTAGTAATACCTTTGTAAAGAAATATAAGATTGTTTAGATAGTGATCTAAACAATTTTATGTTTATTTACAGAGGG
AGTATCATGCACA---CACTATTCTTCGAAACCTACCTCCCCAATGGACAAGTGCATCATACATTTCAGCAAAATATAAT
CGATCGATGCGGGTACCGAGGGGATTTTTGGAGG---AAAATGCGTAGTATCATACAC--TAGCAAAATGTCATCGATCG
ATGCAGATACCGGTGAGAATTTCTGCGGAAAAAGAAACTTCAGCACGTTATAACCGCTGATTTCTTATCTACTGTGGTCA
CTGAAGGAGACATCTGAATTATTGTAAGCGACAGGAGACACGTCTTGTTGTTCCCTATCACAATAA-TAAAGATAGCGTC
CACATGTAAGGCGTGACTCATTAGGGT-----TATCTGCACTATGTGGCACTGTGCCACCGCGCTTCAAGC-TTTTTCAT
GTTCCGGCGCCATGTGTAGCATGCGGGCGAATATTGTACGTACGA-CAAGCCTTTCTTTTTTAGCACTGGCAGAGACAGA
GACAGCTTCACTTTTCGCGATGCCAACAAACCAAACTAA-ATACACGCGTGCAAGCTTGGCATCGCGTCTCTATATAACC
CATCGACCAGTCGCTAGCTCATCTCATCCATATTTCTCCATTGCCATTCACGTTCTTCTAAGTTCTCAGAGGAATCAACC
CCTACCGTTTCAAGGATCGAGCACGTATAAACTACGAGCAAGCATCTCT-AAAATTTGTTGTCTCGCCGCCATGATTTCG
AGGTCTCCCAGCCTCTTCCAGATCGACGACGGAGAGGCCCAGG------ATCAGGATCAGGCGGGGACGCCAACAATGGC
GACCGCCGGGGAGCTCGTCGGGCTCCGGCTGATCATACAGCCCTCGCCGAGGCGACAACAACGGCCGGCGCTGGCCGTCC
TCAGGAGGTCTTCGGTGAGGTCCCCGGCTGCCGACCTCCAGGAGAACAGCGGCTGCCGGCCGTTCGTGGGCCTTGAGTTC
TTGAAGTGCTGCCTCTGCTGCTGCAAGAAGATCGACGGCGACATGGACGTCTTCGTGTACAAGTAAGAGAGATCAGATAT
AGACCTACCCCATTCAACCTCTATGCTTATTGTTACTTGGCTTGAGCTGAGGTTCTTACGGTTCTTGGGATTATTTCTGC
AGGGGAGAGCAAGCCTTCTGCAGCGCCGAGTGCCGGTGTCAGCAGATGGCCAGGGAGGAGAGGCGGGAGATCGAGATCCT
GGTCAGGAAGCGGCGTGACGCGTTCCACAGCCGCCGTGCAGCACCGGGCAAGACGATCGGAGGACCGGACCGCCACGCGA
GGGTGCAAATCTCAAGTTTTTGCTAGTTG--ATTACTGTAGATCTTACCGTACTTGCAGGGAG-----------------
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>chr4B_1
TTATACCGCCGACAGTTGCACTGGCAAGGGAGGGAAAAGGCGGCACTAGTGAGGGAGGGGAATAGCAACGCTGGTAGAGT
GAAATAAGGCGCACGAGGATGTAGATCTAGAGGGTGAAGGAGGCGTGAGGCAGCGACTTACTTTCTGAGGATAGAATAAT
TAGCCCCAACAAAATATTGTATGATAAACACTAGTTGAAAAGTGATTCTAGAATGATATCTTTCATGGTGGGTAATATAA
TAAACTAGTAATACCTTTGTAAAGAAATATAAGATTGTTTAGATAGTGATCTAAACGATTTTATATTTATTTACAGAGGG
AGTATCATGCACA---CAGTATTCTTCGAAACCTACCTCCCCAATGGACAAGTGTATCATACATTTCAGCAAAATATCAT
CGATCGATGCGGGTACCGAGAGGATTTTTGGAGG---AAAATACATAGTATCATACACTTTAGCAAAATATCATCAATCG
ATGCAGATACCGGTGAGAATTTTTGGGGAAAAAGAAACTTCAGCAAGTTATAACCGCTGATTTCTTATCTACTGTGGTCA
CTGAAGGAGA----------------------------CACGTCTTGTTGTTCCCTATCACAATAA-TAAAGATAGCGTC
CACATGTAAGGCGTGACTCATTAGGGT-----TATCTGCACTATGTGGCACTGTGCCACCGCGCTTCAAAC-TTTTTCAT
GTTCCTGCGCCATGTGTAGCATGCGGGCGAATATTGTACGTACGAACAAACCTTTCTTTTTTAGCACTGGCAGAA-----
-ACAGCTTCACTTTTCGCGATGCCAACAAACCAAACTAA-ATACACGCGTGCAAGCTTGGCATCGCGTCTCTATATAACC
-ATCAACAAGTCGCTAGCTCAACTCACCCATTC--CTCCATTGCCATTCACGTTCGTCTCTCTTGCC------ATTAACG
CCTACGCTTTCAAGGATCGAGCACGTATAAACTACG----AGCATCTCT-AAAATTTGTTATCTCGCCGGGATGATTTCG
AGGTCTCCCAGCCTCTTCCAGATCGGCGAGGGTGAGGCCCAGG------ATCAGGATCAGGCGGGGACGCCAACAATGGC
GACCGCCGGCGAGCTCGTCGGGCTCCGGCTGATCATACAGCCCTCACCGGGGCGACAACAACGGCCGGCGCTGGCCGTCC
TCAGGAGGTCGTCGGTGAGGTCCCCGGCAGCCGACCTCCAGGAGAACAGCGGCTGCCGGCCGTTCGTGGGCCTCGAGTTC
TTGAAGTGCTGCCTCTGCTGCTGCAAGAAGATCGACGGCGACATGGACGTCTTCGTGTACAAGTAAGCTAGATCACT--T
GCACCTTCCTCATTCAATCTCTATACTAATTGTTGCTTGGCTTGAGCTGAGATTCTTACGGTTCTTGGGGTTAATTCTGC
AGGGGAGAGCAAGCCTTCTGCAGCGACGAGTGCCGGTGTCAGCAGATAGCGAGGGAGGAGAGGCGGGAGATCGAGATCCT
GGTCAGGAAGCGCCGTGAAGCGTTCCACAGCCGCCGTGCAGCGCCGGGCAAGACGATCGGAGGACCGGACCGGCACGCGA
GGGTGCAAATCTCAAGTTTTTGCTAGTTATAATTAGATC----CTTGCTGTACTTGCAGTAAGCCAGTGATAAACTAAGG
A-------------------------------------------------------------------------------
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>chr6D_1645
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-GAGTAAATTGCATAAAACCACCACTTTGAAGGCTCGGTTTGCGAAAAACACTAGGATACAGTTTCTCTGTAGAAAACAT
CACATCTTGCGTAATGGTTTTGCAAAAACCACTGATCGGCGGATCTGACCATGTTAAGTGAGTTTATGACAGGTAGGGCC
CGACAGTCAGGCTGACGTGGCACCGCTTAACATCTCACATGTAACGGCGACGTTTGGTACTATTA-TATCATCATGTGTG
GCCCTATGGGGTCCACGTGTCATTGGAAGAGAAAAAGGGTTCATCTTATCTTCACTACACCGCCGCCCGTCCCGAGCCGT
GGCAGAGCCGCGCCGTCGTCCGTCCCGACCACAGCCACCGGCCGGCCCGACCTCGACCGCCGCCCGTCCCGACCCCGGCT
GAGGCAGAGGCCCGTCATCGCCGTTGCCG--CACCAAGGGCGAGGCAGG--GGACGCCGCATGTCCCGCCCCTGC-----
----------------------------------GCCCGGCCGAGGAGCGGCCTGCCGCCATGCGCCGGTGGGTCTTG--
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>SNPs
--------SS--------------------------S------S-------------------------S-S-----S--
-------------S------------------------------------S----------S----S------------S
-----------S-------------S-------------------------------S----------------------
------------SS---------------------SS-------------S------S-S-------SSSS---------
-------------SSS---------S------S-------------S-S---S----------------------S----
--S---SS--S-S-----SS-S---S--SS--S-SSS--------SS-------------S----------S----S---
-------S-----S-----------SS----------------------S---------------------------S--
-S------------------------------------S--SSS-S----S---------------S-------------
----------S----------------SSSSS------S------S-------------S-----S-----S----S---
-S------------------------------------------------------------------------------
------S--------------------------------S----------------------------------------
--------SS--------------------------------------SS------------------S-----------
---S----------------------------S----------------S----S-------------------------
--------S----------------------------------SSSSSS--------------------S----------
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-----------------------S-S-----------S-------S---------------S---S--------------
S-------------------------------------------------------------------S-----------
-----S--------------------------------------------------------------------------
-------------------------------------S---------S------------S-------------------
----------------------------------------------------------------------S---------
----------S-----------------------------------------------------S-----S----S----
-----------S-S-------S--S---S----S-S-------S-----S----S------S-------SS-S------S
--S-------------------S--------SS--------S--------S------S----------------S-----
-SS----S--S------------------------------------S--S--------S-----S--------------
----------------S-------------S------S--------------------------S-------S-------
------SS-S--------S----S----------------------------------------------S--------S
SS-----------S--S-S-S-----S--SS----------------SSSS---------S-----SS--SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------S-----------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_426
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------GCGCAGATACCGGAGAGATC------------------------------------------------------
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>reverse_1843
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--CCAGTTAGACTGACGTGGCA----------------------------------------------------------
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