>input_sequence_74742
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----ACTACCAGCACTCCGGCCGAAAAACTGCACGAT---TCAATCCGTTCCAAAACAAGGGTAGCCGTCA--------C
CATGGCGAGGGCAACGACACTGGTGCTCGTGGCCGCGCTCGCCGTCCTCCTCCTCCTCGCCTCCGGCCCCGCGGGCGCCA
CGGCCGCCCGGACCTCGCCCAAGGACGTGGCAACGGCATCTCCCGACGAGGTACGCACGCGCGCGCAGGATCGATCTAAA
ACGTTTTCAAGGACTCTCGGCCGATCCTCCATCGATTTCTCATCTTCTTTTCTAACCGATGCCGCTGTG---------TT
TCTTGCAGAAGGTCGCTGTGGCGGCGGCGGAAGACCACGAGTGCGAGATGATGGCCGGCGAGAAGCAGCGGGATGAGTGC
ATGGCGAGGAGGACGCTCGCCGCGCACACCGACTACATCTACACCCAGGAGAAGCACAACTAGTAGCCTTCATATCTGCG
TCCATGTAATGATGTTATTGTTAGTCGGCACTGCGTCTGCGTGTTCGATCTCTATCCTATAGCTTCCTCCATGAACAAGG
GATCGATCCCACCG---------TGCAT-----GCATGCATGCATGGCGCAATTATGTATTGCCTAAAATAAT-------
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>chr2D_1_TraesCS2D01G256900
TCATCATTTTCTAAAAAGTTCACAAATTTTAGAAATTATCATCAATTTTTTTTAAGTTCAAAAATTCGAGGAAAAGTTTA
TAAATTTTGAAAAAATGTTCATCAATTCTAAAAAATAAAAAAATTGAAAAAAATCACCAGTTTTGAAAAAAGTTCATCAA
TTTTGCAAAAAGTTCATGAATTTAAGAAAGAACAAAATAAAACGAAAAAGGAAAGAAAAGGGAAAAAAGAAAAAAGAAAA
GAAAAAGGAAAGAAAGAAGAAAAAGAAGAAGTGATCAAAACATGCATTGTGGTCCGGGTGGTTAGTGCAGTTTATCGAGT
GCAACGAGATCCTGGGTTTTTTTTTGTTTATTTGTTCGTAAATAGTTTGGATTGCTTACCACATACTATATCACGTGGCA
AGGAGATCCTGGGTTTGACTCTCCACGCGGACGCTTTTTTTGCAGTTTTATAGAAAGAAAATAAAAAAAATCTAAACGGG
CCGGCCCAGCTTGAAAGGGTGTGTGTGCGTCCGTTTGCAAAATGCACAATAACAAACGCCTGAAGCGTCAAATAGGAAAT
CACACCAATTTTCTAGAAAAAACACAC---AAAAATGGTCATTCATCCACGAGTCCTGTTGCACATGCGTGCGCAGGGGC
GGATCGACACCCATTACAGCCACCGGACATGCAGCCTTTCGGGTAAGGTAAGCACGCGCCCGCGAGACTCGATCCACCAC
ATCCAGCCGTTTGACAGTTGAACAAGTTGTGAGCCGGGAATA------------------------------ATTACGCC
CCGAGCCAGGAAATTTTCCTTCAGTAGATCATCATAGACAGCGAGAAGGGCCTGCGCAGATCGACAGTCACCGACAGACT
GGCCTACGCGCAGCAAGGGCCACGTGTAATGGGGCCAGCACATGTGGCAGCGCAGTGCGCGCCTGCTCC------GCTCC
TGCACCTGCAAAACGGCTCCGCTATTTCCATGCTCCCCCTCTACCTCTTTAAATAC-----CATCCATTCCGCCCGCATT
CTCCACTACCAGCACTCCGGCCGAAAAACTGCACGAT---TCAATCCGTTCCAAAACAAGGGTAGCCGTCA--------C
CATGGCGAGGGCAACGACACTGGTGCTCGTGGCCGCGCTCGCCGTCCTCCTCCTCCTCGCCTCCGGCCCCGCGGGCGCCA
CGGCCGCCCGGACCTCGCCCAAGGACGTGGCAACGGCATCTCCCGACGAGGTACGCACGCGCGCGCAGGATCGATCTAAA
ACGTTTTCAAGGACTCTCGGCCGATCCTCCATCGATTTCTCATCTTCTTTTCTAACCGATGCCGCTGTG---------TT
TCTTGCAGAAGGTCGCTGTGGCGGCGGCGGAAGACCACGAGTGCGAGATGATGGCCGGCGAGAAGCAGCGGGATGAGTGC
ATGGCGAGGAGGACGCTCGCCGCGCACACCGACTACATCTACACCCAGGAGAAGCACAACTAGTAGCCTTCATATCTGCG
TCCATGTAATGATGTTATTGTTAGTCGGCACTGCGTCTGCGTGTTCGATCTCTATCCTATAGCTTCCTCCATGAACAAGG
GATCGATCCCACCG---------TGCAT-----GCATGCATGCATGGCGCAATTATGTATTGCCTAAAATAATTTAGTAA
TTCGATAATCAAACTTGGTTTTATCGCTCGGTTTGCAAACGGCTGCCAAGCCATGTTGGGCTGTCTCGTTAATTTGCTTA
ATTAGTCTTCAGTTTGACGCCAAAATTTATTGTTTTGGAATCAAGGCTGGCTTTCTTCTGGCACTCGATCGGAGCCGAAC
TTGACCAAAACCAGACCAGCTCATTCGGTAACATAACGCCAAAATCAGTTTGCTTTCCAGGCGCTCCACGGCCGAACGAG
CCACGGAAATCGCCGAATCTGTCACAATTCATCTTCAGCGCACACTGTTTCACACAAGGCAAAAGAACAAAAATCAGACA
CAAGTGAAGAAAACACTCTCGTACGTGGACCATGATGACAGCAAACAATCGAAATCGGCAGCAAGTAAACAAATCTTGTA
CTGGTAGTCAGTCAGTATACGTACGTATTTATTCGCTGATACAGGCACGGTCTACGTCGGTTTCGTTCTTCTGGATGCCA
GCGAAGACTTCCTGACGGATGCGACGCAACAGGTCAAATATCCGAAGAAAGACAGAATATAATAGCCAGATTGGGCGTCA
GATTTTGGGCAGCGACAACCGGGATCATTTGACCTCGCTCAGATGATGCTTAGATCAGCAATTCAG--------------
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----------------------------------------------------------TAAGTGTATAAGGTTGACGCAA
-CGTACTCTGCTGCTGGATGTTTACAACTCTAGATATCAAGATACTCCTCTACCATTAA--AAAAAAGGATACTCCTCCA
GAATGCTCTTGATGACGACCGTCGTGATTTTGACAACCTATATCAACTAAATAGTTTTGCTAAATTACATTTAGATGTGT
CCTAAATATTGCACATCTAAATCCTACTCCCTTCGTCCATGAATAAGTGTACTCCTAGCTTTTGTCTTAAGTGAAAATTT
TAAATTTTTGACCAATTTTATAGGACAAAGTAGCAGCATTTATGACACTAAATTAGTATCACTAGACCCC-TTTTGAAAT
GTACTTTCATAATATACCAATTTAATGTC
>chr2B_507
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--------------------------GCGTCCATTTGCAAAATGCACAGTAACAGATGTCTGAAGTGTCGAATAGGAAAT
CAGACCAATTTTCTTGAAAAAACTCAAAAAAAAAATGGTCATTAATCCACGAGTCATGTTGCACGCGCGTGCGGACGGGC
GGATCGGCCCGCATTAGAGCCACCGGACATGCAGCCATTCGGGTAAGGTAAGCACGCGCCCGCGATACTCGATCCACCAC
ACCCAGCCGTTTGACCGTTGAACAAGTTGTGAGCCGGGAATATGTACAGTAGTAAAAACATTCTTGGATTTAATTACGCC
CTGAGCCAG-AAATTTGCCTTCAGTAGATCATCATCA-------------------CAGATAGACAATCACCGACAGACT
GGCCTACGCGTAGCAAGGGCCACGTGTAA-GGGGCCAGCACATGTGGCAGCCCAGTGCGCGCCTGCTATTTCCATGCTCC
TGGACCTGCAAAACGGCTCCGCTATTTCCATGCTCCCCCTCTACCTCTTTAAATACAGTACCATCCATTCCGCCCACAGT
CCCAACTACGAG-CCTCCGGCAGAAAAACTGCACGATTCATCAATCCGTTCCAAAACAAGAGTAGCCGTCACCGGACCTC
CATGGCGAGGGCAACGACACTGGTGCTCGTGGCCGCGCTCGCCGTCCTCCTCCTCCTCGCCTCCGGCCCCGCGGGCGCCA
CGGCCGCCCGGACCTCGCCCAAGGACGTGGCAACGGCATCTCCCAACGAGGTACGCACGCGCGCGCAGGATCGATGTGAA
AGGTTTTCAAGGACTCTCGGCCGATC-TCCATCGATTTCTGATCTT---TTCAAACCGACCCCGTTGTGTGTTTCTTCTT
TCTTGCAGAAGGTCGCGGCGGCGGCGGCGGAAGACCACGAGTGCGAGATGAGGGCCGGCGAGAAGCAGCGGGATGAGTGC
ATGGCGAGGAGGACGCTCGCGGCGCACACCGACTACATCTACACCCAGGAGAAGCACAACTAGTGGCCTTCATATCTGCG
TCCATGTAATGATGTTA-----------------GTCTGCGTGTTCGATCTCTATCCTATAGCTTCCTCCTTGAACAAGG
GATCGACCCCACCGTTCATGCAATGCAT-----GCATGCATGCATGGCGCAATTATGTATTGCCTAAAATAATTTAGTTA
TTCGATAATCAAAC-TGGTTTTATCGCTCGGTTTGCAA----------------------------CGTTAATTTGCTTA
ATTAGTCTTCAGTTTGACGCCAAAATTTATTGTTTTGGAATCAAGGCTGGCTTTCTTCTGGCGCTCGATCGGAGCCGAAC
TTGACCAAAATCATACCAGCTCATTCGGTAACATAACGCCAAAATCAGTTTGCTTTCCAGGCGCTCCACGGCCGAACGAG
CCACGGAAATCGCCGAATCTGTCACAATTCATCTTCAGCGCACACTGTTTCACACAAGGCAAAAGAACAAAAATCAGACA
CAAGTGAAGAAAACACTCTCGTACGTGGACCCTGATGACAGCAAACAATCGAAATCGGCAGCAAGTAAACAAATCTTGTA
CTGGTAGTCAGTCAGTATACGTGCGTATTTATTCGCTGATACAGGCACGGTCTACGTCGGTTTCGTTCTTCTGGATGCCA
GCGAAGACTTCCTGATGGATGCGACGCAACAGGTCAAATATCCGAAGAAAGACAGAATATAATAGCCAGATTGGGCGTCA
GATTTTGGGCAGCGACAACCGGGATCATTTGACCTCGCTCAGATGATGCTCAGATCAGCAATTCAG--------------
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----------------------------------------------------------TAAGTGTATGAGGTTGACGACA
GCGTACTCTGCTGCTGGATGTTTACAACTCTAGATATCAAGATACTCCTCTACCATTAA--AAAAAAG-ATACTCCTCCA
GAATGCTCTTGATGACGACCGTCGTGATTTTGACAACCTATATCAACTAAATAGTTTTGCTAAATTACATTTAGATGTGT
CCTAAATATTGCACATCTAAATCCTACTCCCTTTGTTCACGAATAAGTGTATTCCTAGCTTTTGTCCTAAGTGAAAGCTT
TAAATTTTTGATCAATTTTATAGGACAAAGTAGCAGCATTTATGGCACTAAATTGGTATCACTAGAT-CC-TTTTAAAAT
GTACTTTCATAATATACCAATTTAATGTC
>chr2A_651
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-------------TTAGAGCCACCGGACATGCAGCCATTCGGGTAATGTTAGGACGCGCCCGCGAGACTCGATCCACCAC
ACCCAGCCGTTTGACCGTTGAACA-GTTGTGAGCCGGGAATATC-----TAGTAAAAACGTTCTCGGATTTAAT------
-----CCAG-GAATTTTCCTTCACTAGATCATCACAGACAGCGAGAAGGGCCTGCGCAGATAGACAGTCACCGACAGACT
GGCCTACGCACAGCAAGGGCCACGTGTAATGGGACCAGCACATGTGGCAGCCCAGTCCGCGCCTGCTCTTGCA-------
-------GCAAAACGGCTCCGCTATTTCCATGCTCGCCCTCTG-CTCTTTAAA-----TACCATCCACTCCACCCACATT
CCCCACTACCAGCCCTCCGGCACAAAAACTGCACGAT---TCAATCCGTTCCAAAACAAGGGTAGCCGTCACC-------
-ATGGCGAGGGCAACGACACTGGTGCTCGTGGCCGCGCTCGCCG---TCCTCCTCCTCGCCTCAGGCCCCGCGGGCGCCA
CGGCCGCCCGAACCTCGCCCAAGGACGTGGCAACGGCATCTCCCAACGAGGTACGCACGCGCGCGCAGGATCGATCTAAA
ACATTTTCAAGGACTCTCGGCCGATCCTCCATCGATTTCTCATCTTCTTTTTTAACCGATCCCGTTGTG---------TT
TCTTGCAGAAGGTCGCGGCGGCGGCGGCGGAAGACCACGAGTGCGAGATGATGGCCGGCGAGAAGCAGCGGGATGAGTGC
ATGGCGAGAAGGACGCTCGCCGCGCACACGGACTACATCTACACCCAGGAGAAGCACAACTAGTAGCCTTCATATCTGCG
TCCATGTAATGTAATGA-TGTTAGTCGGCACTGCGTCCGCGTGTTCGATCTCTATCCTATAGCTTCCTTCATAAAAAAGG
GACCGATCCCACCG---------TGCATGCATCGCATGCATGCATGGCGCACTTATGTATTGCCTATAAT---TTAGTAA
TTCGATAATCAAACTTGGTTTTATTGCTCGGTTTGCAA----------------------------CGTTAATTTGCTTA
ATTAGTTT----------GCCAAAATTAATTGTTTTGGAATCAAGGCTGGCTTTCTTCTGGCACTCGATCGGAGCCGAAC
TTGACCAAAACCAGACCAGCTCATTCGGTCACATGACGCCAAAATCAGTTTGCTTTCCAGGCGCTCCACGGCCGAACGAC
CCACGGAAATCGCCGAATCTGTCACAATTCATCTTCAGCGCACACTGTTTCCCACAAGGCAAAAGAACAAAAATCAGATA
CAAGTGAAGAAAACACTCTCGTACGTGGACCATGATGACACCAAACAATCGAAATCGGCAGCAAGTAAACAAATCTTGTA
CTGGTAGTCAGTCAGTATACGTACG----TATTCGCTGATACAGGCACGGTCTACGTCGGCTTCGTTCTTCTGGATGCCA
GCGAAGACTTGCTGACGGATGCGACGCAACAGGTCAAATATGCGAAGAAAGAGC--ATATAATAGCCAGATTGGGCGTCA
GATTTTGGGCAGCGACAGCGGGGACCATTTGACCTCGCTCAGATGATGCTCAGATCAACCAGACCCGTGCGGAAAGGAAA
TCTGGTTTTCCTGTTGGATCTGCATAGCATGAAATTTAAAGTATCTCTGAACATGTCTCACGGGAAACGTAGGAATCGAC
AGTTTTTTGCGAGCTAGGTCGAGCCTAGCGCAAGCGAGTGGGCCCTTGTACGAGCGGAGACGCGAGGGATGCAAGGTGAT
TACCTGAGGTCTTCTTCAACCTCCGATAAGCTCCTGTCCAATCTCCTACCTTTGATCTACACAACGGTGCTTCAGTTCGA
GGTAAGCTCTACATGAAAAAGATGCACCTCGATGCTACGGTTTCATTCAGGCGATCGGTTTGTAGTTTCATTGACCGTAA
GTTCTTAATCCCGTATTCCCGTTTGGAGCTATTTTGAACGAATTTTGTCAGATTCATCGCGCACGATTATGTCGAGCTCC
TGTGTCCTCTGCTCAGAGTCATCCTATTCATCCTTCTCGATGCCGAAGCCCTTCCTCTTGATCTCCTTGCCCGCGTGCTA
CTACACTAGAGTCGTTTCCGGAGTCACTCATCTCGGCCTACTCTCTGTCGCTGCAATGGCGTGCACACTGCTTTTTTGTG
TCCTCTACCTCCGTGCACACTGCAGTTCGCCGCATCGTTGACGGGGTCGATCATCTTCGCCTCCTCCCTCTCGCCCTACC
ACACTGGAGTCGTTTCCGGCGTCGATCATCTCGGCCTCCTCTCTCGTCCACTGCACTGACGATACCATGACGCGAGCACT
GCATTCTTCTCCTTTGTCCACTGTCTTTGCGCGAGCACCGCAACTAGTTCGCCGACGGTGTCGCTCGCGTGCCGCCGACA
GGGTCGCTCGTCCACGACTCCATGCTTTTCATGTCGGACACGGCGCCACGACCACTATCCACCATAGTCGTTATTGTCCG
ACGTGCACTGCACTTCTTCTCCCCTTCCCTCTGCTAGCTCTTAACCCTGTCTGCTAAGTGAAGTGCTAGATCTTAATCAT
ACCTCATGCATGCAACCAAACACCAAGTTCATGTGCTGCTTGGGCCAATGCAGGCAACCAAACAAAGTGCACTTGCATAT
TAGTTAATGCAAGGACCCTAGATGCAGGCAACCAAACAACTTACAGATGTCACATACGAGGCTGTTTTTTCATAATCAAA
CTGGGTTGAGATGTGTATGCACGACAACTACTATTCATTACGCCAACCAAACACGCCCTAAGTATATGAGGTTGACGACA
GCGTAC-CTGCTGCTGGATGTTTACAACTCTAGATATGAAGATACTCCTCTACCGTTAAAGAAAAAAGGATACGCCTCCA
GAACGCTTTTGATGACGACCGTCGTGATTTTGACAACCTATATCAGCTAAATAGTTTTGTTAAATTACATCTAGATGTAT
CCTAAACACTCCACATCTAAATCCTACTCCCTCTGTCCGCGAATAAATGT-----TAGCTTTTGTCTTAAGTCAAAGTTT
TAAATTTTCGACCAATTTTATAGAAAAAAGCAGCAGCATTTATGGCACTAAATTAGTATCATTAGAT-CCGTTTTGAAAT
GTACTTTCATAATATACCAATTTGATGTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------S---------------S-----S-S-S------S---S----------
--S-----------S--------S--S----------------S-----------S--------SS-------S-S----
------S-S-S-----S-------------------S-------------------------------------------
-S-------------S----------------------------------------------------------------
-S-------S---------------------------------------------------S------------------
---------------------------------------------------S----------------S-----------
--S------------------------------------------------------------------------S----
-S-----------S-------S----------------------------------------------------------
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------------------------------------------------------------S---S---------------
----------------S-S-------------------------------------------------------------
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-----------------S--------------------------------------------------------------
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--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
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-------------------------------------------------------------------S---------SS-
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---------------------------------S-----S-----------S------------------------S---
--------------------------------------------S---------------------SS------------
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>forward_304
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--------------------------------------------CATTGTGGTCCGGGTGGTTA----------------
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>reverse_3518
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-----------------------------------------------------------------------------CAA
CGTACTCTGCTGCTGGA---------------------------------------------------------------
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