>input_sequence_74727
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------------------------------------------------------------------ACCGTGACTCGGCC
GGAATAGAAAACT-CCACTCCCGATCCCACCCCGCGGATTCCCCGAGCCTCACTCCGCTCCGCCTCCACCCCTTGGCCGC
CCTGCCCAATTCCGCTGTCTGCTCTCCAAGCCCGAATGGCGGCGGAGGCCCGGGCCGAGGGCTCCGGGCCGCCCGCGCCC
CCTCCGCTGCCCGTCCCCGAGAAGCGCCCGGCCCCGGTAGACGGCCGGGAGGAGGAGCGGCCCGGGACGAAGCGGCGCCG
CGCGAGCGTCGCGGCGCTCGACGGCGTGCCCTGCGCCGCGGCCAAGGGCGCGGACGGCGAGGCGGACGGGAACCGTGACG
GCGGCTCGTCCTTCTCCTTCCAGCACTCGCGCGGCGGTTTCGTGGCGCTGGAGACGACGCCCAAGTTCGGGTCATTCAAC
CCGCCGGTGGCCGCCGAGCAGGAGGCCCTCCACCCGGAAGATTCACCGGTTGTGAAGGAGGAGGGG---GAT---ACGGC
CTCGGCCACCGGAGTTGAGGTTGGCAAAGACGGAAGTTCGCAGTCAGTGGCGGCGGTGGACGATCAGGGCCGTCGCCATC
CGGGAAGACAAACTGAATCGGAACGATGA---------------------------------------------------
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>chr3D_1_TraesCS3D01G324500
ACCTGTTTCCTCCAGGCATCATCAAACCCCTTCATGCGTAAGGCTTGTTGGAGGAAGGGCCATTTGACCTTATCGTACGC
TTTCTCATAGTCCACTTTGAATATAACCCTGTCAAGTTTCTTCGAATGGATTTCGTGAAGAGTTTCGTGTAAGACAACAA
CCCCTTCTAGGACGTATCTCCCCAGCATAAACGTAGACTGTGTTGGGTGTATCACCGAATGGGCATTTTGTGTCAACCTA
TTTGTGGCAACCTTAGTGAAAATTTTGAAACTCACATTGAGCAGGTAGATCGGCCTGAACTGCTCAATGCGCACAAACTC
CTCCTTCTTTGGCAACAATGTTATTGTTCCACAGTTTAGGTGAAAAGTCTGTAGGTTAGAGCTAAACAAATCAAGGATCA
TAGGCATTAGGTCATTCTTAATGATATGCCAACACCTCTTATAAAACTCTGCCGGAAAACCATCCGGACCAGGAGCCTGT
TGAAAACAAATAGCTGCAGGAAACAGATCTTACTAACAAGGAGAAGTCAA-GGTCGATCATTTCGGACCTTTATATTCCA
CATACCATGTTGTTTGTTATCATAGGACCTTGATATTTCATACGAG-GTCTGCTAGAGATGCTCTTAAGAGGCGGGGGTG
GGAAGAGGAGTATCCGATGGATCACGGCAAACGGCTCGGTGGCTT-----------------------------------
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-------------------------------------------------------------TTACATTTCTGTTTTACCT
TTCCAGTAAACTTGTATC--------------------------------------------------------------
----------------------AGAGAGAGACCACCTATCGCAATTGAGCTGTGAAATCAATAGAGAGGACGAGTAGATC
CTAACAAAAACAT-------------------------------------------------------------------
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----------AGAGACGGTCGTGGCGGTAACGCAGCAGAGAGGCGCCTGCGCGCGTCGCAGCAAAGGTGCCGCCGCTGTG
CAGCAACGACGACAGGAGAGGGCAGCGTGGGCGGTGTCGTCCCGTCCCGTCCCGTCCAGCAGGGCTCGCATGTTACCCTC
ACGCCGTTAATCGT-------CATCAACTGGCCACAAAAAGGAAGCTGGCGGAGGCGAGCACGCGCACCGTGACTCGGCC
GGAATAGAAAACT-CCACTCCCGATCCCACCCCGCGGATTCCCCGAGCCTCACTCCGCTCCGCCTCCACCCCTTGGCCGC
CCTGCCCAATTCCGCTGTCTGCTCTCCAAGCCCGAATGGCGGCGGAGGCCCGGGCCGAGGGCTCCGGGCCGCCCGCGCCC
CCTCCGCTGCCCGTCCCCGAGAAGCGCCCGGCCCCGGTAGACGGCCGGGAGGAGGAGCGGCCCGGGACGAAGCGGCGCCG
CGCGAGCGTCGCGGCGCTCGACGGCGTGCCCTGCGCCGCGGCCAAGGGCGCGGACGGCGAGGCGGACGGGAACCGTGACG
GCGGCTCGTCCTTCTCCTTCCAGCACTCGCGCGGCGGTTTCGTGGCGCTGGAGACGACGCCCAAGTTCGGGTCATTCAAC
CCGCCGGTGGCCGCCGAGCAGGAGGCCCTCCACCCGGAAGATTCACCGGTTGTGAAGGAGGAGGGG---GAT---ACGGC
CTCGGCCACCGGAGTTGAGGTTGGCAAAGACGGAAGTTCGCAGTCAGTGGCGGCGGTGGACGATCAGGGCCGTCGCCATC
CGGGAAGACAAACTGAATCGGAACGATGACTCTCTGGATTTGATTA-GTTTCTTCTCCGCAGCCCGGTTTAGATTTCAAG
GGCGTCAATGTTGTTCTCTTCCTTCCTACTAGATCATGTGATAGTTTCAGTTGAAGGGAATGTATGTCAAAGCTTTGTTT
TCTTATGGAATGGAGG------ATTGGAAGTCAACGTTGATTCCTG----------TGTAGAACCAAACCTGGCGTTTTT
TCC-----------------------------------------------------------------------------
-TAGATACCTACTGAAATACTCCCTCCCTCCCATAATGTAAGA---CCATTATGGGACGGAGGGAGTAGTTAGTTCCAGG
ATTTGCTTAATTTAATTACCGTTTCCCTTTACAAAATCGAGTTTTCTTATCAACAAACTTGATGGTGTAGCTGCTCTTCT
CATGTCAACATGGATTGAAC--AAATCCACACCTGTGTGCCACAGCCACAAAACTGAGACCAAATACAGAACCTCACTCG
GTCAGTCCACGACTGGTGCTGCCTCTGACAGTGAATCTTCTTTGCTAAACGTGGCATTCGATGACATTGGTTCCCTGTAC
CACTCATTCTCCTCGCGAGTGAGGAAGCGAGCCTCTGCACCAAAGACATGGAGGATTCAAAATTAGCGCAATACAGGTTC
CAATTT-TTTGTTTAACACAACTTTTGTCTATTCGGATATCAGCAATCCAGTTTTGTCTATGTGTTCGGCAATTCGGCTA
AGCGTTTTGACCTTATATAGATGAGAAACATAAATTTTGTGAAATGCAACAGGCAACATACCTGACACAAAAACATCCTT
GTAGTCATCATCGTCATACACAAACGCAGGTGGATCTGGGGAACCAATTCCAACTATAGTGCTTCCACTGCATGAAACAT
TCACAATGTTGTCCCGATCAAATAGTTTGGCTACTAAATGCATTTCCAAATTTCAAATGCAGATACGAGTGTTGAATAGT
CAACAGGGGGT---------------------------------------------------------------------
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---------------------------------------------TATATTTGCCCTGATTGTTATAATCAAACTTGTAC
CATGGAATCTCACACCTTAAATACGTTATTTTTGCTACTGAAAT
>chr3B_1
ACCTATTTCCTCCAGGCATCATCAAACCCCTTCATGCGTAAGGCCTGTTGGAGGAAGGGCCATTTGACCTTATCGTACGC
TTTCTCAAAATCCACTTTGAATATAACCCCGTCAAGTTTCTTCGGATGGATTTCATGAAGAGTTTCGTGTAAGACAATAA
CCCCTTCTAGGATGTGTCTCCTCAGCATAAACGCAGACTGCGTTGGGTGTACCACCGAATGGGCAATCTGTGTTAACCTA
TTCGTGGCAACCTTAGTGAAAATTTTGAAACTCACATTGAGCAGGTAGATCGGCCTGAACTTCTCAATGCGCACAGCCTC
CTCCTTCTTTGGCAACAATGTTATTGTTCTAAAGTTTAGGTGAAAAGGGTGTACGTTACCGCTAAACAAATCATGAAACA
TAGGCATTAGATCATTCTTAATGATATGCCAACACCTCTTATAAAACTCTTCCGGAG-ACCATCCGGACCAGGAGCCTGT
-----------------AGGAAACAGATCTTACTAACAAGGAGAAGTCACAGGTCGATCAATTCAAACCTTGATATTCCA
CATACCATGTTGTTTGTTATCATAGGACCTTGATATTTCATACG-G-GTCTGCTAGAGATGCTCTTAAGAGGCGCGGGTA
GGAAGAGGGGTATCCGATGGATCACGACAAATGGCTCGCGGTTTTTACATTTCGGAAAAAGTCCAAAACAAACCTTGAAC
TTGTAGACCAAAGCTAAATCGAACCCTAAACTTCAAATCCCTGAAATCAACACACCGAACTATATAATCTCGGTCTATTT
TAAACCTTAAGTGCCTTCCCAAACAAAGATCGTCCACGTTGCAGATCGAACCCGGGATGGTTGGCTGCGGCCAGATTGGG
CCGGCCCATCAGGCAGGGCGAAGCGTGTGTTTTTTCTTTTTTGCAACATTTTTTCTGAACCGCGCCACATAAAAACGTTC
AAAAAGAAGAGCCTTGTGAATCGAACTTCTAACCTAACGCTAGTACAGTGCTCCTGATAGCCACTCCAACTGATTCCCGT
TGCGGACATAAGAAAGCGCGAAAATATTTAAACCAATGCAGTGTGTTGAATTGAAAACATTTTCTACAATTGTTTGAAAC
ATTTTCTTGAAAATTGTCAACAACTTCGAAATCCGAATATTCTTGAAAGAAAAAAGCAATTTTTAAAATTCATTTTTTTA
AAAAAATTGAAGATTTTTTGGATTACGAGCAGTTTTAGAAAAACATGACTTTTTTTAAACATGAACCATTTTTTAAAGCC
CCGAACATTCTTTAAAGTGTGAACCCTTTTTGGCAAAAAAGGGACAAATTTTTGAAAACACAAACAATTTTGAAACCTGA
AAAAAATTAAAGTACAATTCTTTCCCCATTATTAAGTTTTTTAGAAAATGTTCACATTCTAAAATATTATACAGGATTCA
AAATTTGTTCCTATTTTTTTCAAAATATGATTATGTTTAAAAATGTTTTCGAAAATTGTTCTCAATTCAATATTTTGTTC
AGGTTTAAAAATTGTTACTGATTTTAAAAAATCACGTTTAAAAATGGTTCGTTTATAAAATATATTCAGGGATTTCAAAA
TGGTCACGTTTGAAAATTTGTTTGTGTTAAAAAATCATAGTTCCGAAATTTGTTTACACTTTTGCAAAACATGTTTGAAT
TAAAAAAAACTGTTTTTTTGCTTTTAAGAATATCCGGATTTCAAAATCGTTGATTATTTTCAAGAAAATGTTTAAAAAAA
GTCTTAAATGTTTACAAATCTCGATGCTAATTACTCTGGTTAAATATTTCCACTGCTTTCATTTATCACTAACAGTTATT
AGGTGGAGTGGCTACACGCTGAGTTTAGCAGCGCCAGATCTTAGGATTGATTCCCCATGAGTATTTTTCTTTTTGGTATT
TTTAAGTCAAAAGAAAAACATGTTTCACGTTTGGTGAGCCGGCCCAGTCGCCAGCGATCCCGGTTCGACCAGCTGCCACG
TCGACAATCCCTTTGAAAAAATGTCCAAGGTTTAATATAGACTAGGATTAGATAGTTCGGTGTGCTGATTTCAGGGATTT
GAAGTTCGGGGTTCGATTTAGCTTAGGTCTACAAGTTTAAGGTTTATTTTGGACTTTTTCCTTACATTTCTGTTTTACCT
TTCCAGTAAACTTGTATC--------------------------------------------------------------
----------------------AGAGAGAGACCACCTATCGCA-----GCTGTGGAATCAATAGTGAGGACGAGTAGATC
CTAACAAAAACAT-------------------------------------------------------------------
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----------AGAGACGGTCGTGGCGGCAACGCAGCAGAGAGGCGCCTGCGCGCGTCGCAGCAACGGTGCCGCCGCTGTG
CAGCAACGACGACAGGAGAGGGCAGCGTGGGCGGTGTCGTCCCGTCCCGTCCCGTTCAGCAGGGCTCGCATGTTACCCTC
ACGCCGTCAATCGT-------CATCAACTGGCCACAAAAGGGGAGCCGGCGGAGGCGAGCACGCGCACCGTGACTCGGCC
GGAATAGAAAAACCCCATTCCCGATCCCA-CCCGCGGATTCCCCGAGTCTCACTCCGCTCCGCCTCC----CTTGGCCGC
CTTGCCCAATTCCGCTGTCTGCTCTCCAAGCCCGAATGGCGGCGGAGGCCCGGGCCGAGGGCTCCGGGCCGCCCGCGCCC
CCTCCGCTGCCCGTCCCCGAGAAGCGCCCGGCCCCGGTGGACGGCCGGGAGGAGGAGCGGCCGGGGACGAAGCGGCGCCG
CGCGAGCGTCGCGGCGCTCGACGGCGTGCCGTGCGCCGCGGCCAAGGGTGGGGATGGCGAGGCGGACGGGAGCCGTGACG
GCGGCTCGCCCTTCTCCTTTCAGCACGCGCGCGGCGGTTTCGTGGCGCTGGAGACGACGCCCAAGTTCGGGTCATTCAAC
CCGCCGGTGGCCGCCGAGCAGGAAACCCTCCACCCGGAAGGTTCACCGGTAGTGAAGGAGGAGGAGGAAGAT---ACGGC
CTCGGCCACCGGAGTTGAGGACGGCAAAGACGGGAGCTCACAGTCAGTGGCGGCGGTGGACGATCAGGGCCGTCGCCATC
CGGGAAGACAAACTGAATCGGAACGATGACTCCCTGGATTTGAT-CCGTTTCTTCTCCGCGACCGAGTTTAGATTTCAAG
GGCGTCAATGCTGTTCTCTTCCTTCCTACTAGATCATGTGATAGTTTCAGTTGAAGGGAATGTATGTCAAAGCTTTGTTT
TCTTATGGAATGGAAG------ATTGGAAGTCAACGTTGATTCCCCTCATATACAC-GTAGAACCAAACCTGCTGTTTTT
TCTCGCATACAGAATGCACCAACTC--TTCTTGCCAAGTGATCTGGAAACAATTGTGATTCCTTACTGCGCATGCTGGTG
ATAGATACCTA-TGAAATACTTACTCCC----------TAAGA---CCATTGTCGGACGGAGGGAGTAGTTAGTTCTAGG
ATTTGCTTAATTTAATTACCGTTTCCCTTTACAAAGTCAAATTTTCTTATCAACAAACTTGATGGTGTAGCTGCTCTTCT
CATGTCAACATGGATTGAACAAAAATCCACACCTGTGTACCACAGCCACAAAACTGAGACCAAATACAGAACCTCACTCG
GTCAGTCCATGACTGGTGCTGACTCTGACAGTGAATCTTCTTTGCTAAACGTGGCATTCGATGACATTGGTTCCCTGTAC
CACTCGTTCTCCTCACGAGTGAGAAAGCGAGCCTCTGCACCAAAGACATGAAGGGTTCAAAATTAGC---ATACAGGTTC
CAGATTGTTTGCTTAACACTCCTTTTGTCTAATCGGATATTAGCAATCCAGTTTTGTC-ATGTGTTGAGCAATTCAGCTA
AGCGTTTTGGCCGTGTATAGATGACAAACATAAATTTTATGAAATGCAACAGGCAGCATACCTGACACAAAAACATCCTT
GTAGTCGTCATCGTCATACACAAACGCAGGTGGATCTGGGGAACCAATTCCAACTATTGTGCTTCCACTGCATGAAACAT
TCACAATGTTGTCCCCATTAAATAGTGTGACTATGAAATGCGGTTCCAAATTGCAAATGCACAT----------------
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>chr3A_526
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---------------------------------------------GTCACATGTCGATCGTTTCAGACCTTGATATTCCA
CATACCATGTTGTTTGTTATCATAAGACCTTGATATCTCATACG-GGGTCTGCTATAGATGCTCTTAAGAGATGCGAGTG
GGAAGAGGGGTATACGATGGATCACGGCAAACGGCTCGGTGGCTT-----------------------------------
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-------------------------------------------------------------TTACATTTCTGTTTTACCC
TCCCTACTTTCTCCGTCCAAAATAAGTGTCTTGAGCTTAATACAAATTCGTACTGGAGCTAGTATAAAATTAAGACACTT
GTTTTGGGATGAAGGGAGTACGAGAGAGAGACCACCTATCGCAATTGAGCTGTGAAATCAATAA--AGGACGAGTAGATC
CTAACAAAAACATTTTTTTCAAGGATACGTCAATGGTGTACCTTAGCTTTATAGAAAAGAGAAATATATGTACAAGAGAT
TATAATTGTGCTAGTTAGGAATCACAAGCCGGCCCTAACCGAGCCTCCACCCCACTCCCACACTCTACTCGACTACTCGA
ATACTAGTTGTCCTCCAAACGCTCATGCCATGGCCCATGTCCTCAAATCACCGAAGATCGAGTCCACCGTATCGCCCTAA
CAAAAACATAAGAGACGGTCGTGGCGGCAACGCAGCAGAGAGGCGCCTGCGCGCGTCGCAGCAAAGGTGCCGCCGCTGTG
CAGCAGCGACGACAGGAGAGGGCAGCGTGGGCGGTGTCGTCCCGTCCCGTCCCGCAAGCCATTTCTCGCATGTTACCCTC
ACGCCGTCAATCGTCGTCACTCATCAACTGGCCACAAAAGGGGAGCCGGCGGAGGCGAGCACGCGCACCGTGACTCGGCC
GGAATAGAAAACT-CCACTCCCGATCCCACCCCGCGGATTCCCCGAGCCTCACTCCGCTCCGCCTCC----CTTGCCCAA
TTCCG------CCGCTGTCTGCTCTCCAAGCCCGAATGGCGGCGGAGGCCCGGGCCGAGGGCTCCGGGCCGCCCGCGCCC
CCTCCGCTGCCCGTCCCCGAGAAGCGCCCGGCCCCGGCGGACGGCCGGGAGGAGGAGCGGCCCGGGACGAAGCGGCGCCG
CGCGAGCGTCGCGGCGCTCGACGGCGTGCCCTGCGCCGCGGCCAAGGGTGGGGATGGCGAGGCGGACGGGAACCGTGACG
GCGGCTCGTCCTTCTCCTTCCAGCACGCGCGCGGCGGTTTCGTGGCGCTGGAGACGACGCCCAAGTTCGGGTCGTTCAAC
CCGCCGGTGGCCGCCGAGCAGGAGGCCCTCGACCCGGAAGATTCCCCGGTTGCGAAGGAGGAGGAGGATACGGCCACGGC
CTCGGACACCGGAGCTGAGGACGGCAAAGACGGGAGCTCACAGTCAGTGGCGGCGGTGGGCGATCAGGGCCGTCGCCATC
CGGGAAGGCAAACTGAATCGGAACGATGACTCCCTGGATTTGATTCCGTTTCTTGTCCGCGACCCAGCTTAGATTTCAAG
GGCGTCAATGTCGTTCTCTTCCTTCCTAGTAGATCATGTGATAGTTTCAGTTGAAGGGAATGTATGTCAAAGCTTTGTTT
TCTTATGGAATGGAAGATTGGAATTGGAAGTCAACGTTGATTCCCTTCAAATATACTGTAGAACCAAACCTGGTGTTTTC
CCTCTCATACAGAATGCACCCACTCTTTTCTTGCCAAGTGATCTGGAAACAATTGTGATTCCTTACTGCGCATGCTAGTG
ATAGATACCTACTGAAATACTCCCTCCCTCCCTCCCTCCCTCCCTCCCATAATGGGCCGGAGGGAGTAGTTAGTTCCAGG
ATTTGCTCGATTTAATTACCGTTTCCCTTTACAAAATCAAATTTTCTTATCAACAAACTTGATGGTGTAGCTGCTCTTCT
CATGTCAACATGTATTGAAC--AAATCCACACCTGTGTGCCACAGCCGCAAAACTGAGACCAAATACAGAACCTCACTCG
GTCAGTCCACGACTGGTGCTGCCTCTGACAGTGAATCTTCTTTGCTAAACCTGGCATTCGACGACATTGGTTCCCTGTAC
CACTCATTCTCGTCGCGAGTGAGAAAGCGAGCCTCTGCACCAAAGACATGGAGGACTCAAAATTAGCGCAATACAGGTTC
CAAATTGTTTGTTTAACACAACTTTTGTCTGTTCGGATATCAGCAATCCAGTTTTGTCTATGTGTTCGGCAATTCGGCTA
AGCGTTTCGACCGTGTATAGATGAGGAACATGAATTTTGTGAAATGCAACAGGCAACATACCTGACACAAAAACATCCTT
GTAGTCGTCATCGTCATACACAAACGCAGGTGGATCTGGGGAACCAATTCCAACTATAGTGCTTCCACTGCATGAAACAT
TCACAATGTTGTCCCTTTCAAATAGTTTGCCTACTAAATGCATTTCCAAATTCCAAATGCAGATACGAGTGTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTATATTTGCCCTGATTGTTATAATCAAACTTGTAG
CATGGAATCTCACACCTTGAATACGTTATTTTTGCTACTGAAAT
>SNPs
----S---------------------------------------S-----------------------------------
-------S-S-------------------S--------------S---------S----------------------S--
------------S--S-----S-----------S------S----------S-------------S-S-----S------
--S----------------------------------------------------------S-------------SS---
-----------------------------S-S---------------SS----S----SS-------------S-S-S--
----------S---------------------------------------S-----SS----------------------
SSSSSSSSSSSSSSSSS--------------------------------S--------------S------S--------
--------------------------------------------S-----------------------------S-----
--------S-----------------------------------------------------------------------
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----------------------------------------------------------------S---------------
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---------------------------S----------------------------------------------------
-------------------------------------------------------S------------------------
-------S-------------------------------S--S---S---------------------------------
-------------------------------------------------------------------SSSS---------
-S------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
------------------------------------------------S-S---S-------------------------
--------------------------S-----------------------------------------------------
----------------------------------------------------------------S---------------
--------------------SS-----------S--S--S----------------------------------------
--------------------------------S------------S--------------SS---S--------------
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--------------S-----------------------------SS---------------------------S------
--S-----------------------------------------------------------------------------
--------------------------------SSSS-S------------------------------------------
--------------------------------------S-S---------------------------------------
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-----------------------S--------------------------------------------------------
---S----------------------------------------------------------------------------
------------S-S-----------------------------------------------------------------
------S-------------------------------------------------------------------------
---------------S-------------S----------------------S--------------------SSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
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-------------------------------------------------------------------------------S
------------------S-------------------------
>forward_316
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--------------------------------------------------------GAACTGCTCAATGCGCACAA----
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>reverse_3566
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---------------------------------------------GTGTAGAACCAAACCTGGCG---------------
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