>input_sequence_74694
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------------------------------------------------------------------------ATGCCCAT
CATCTGCGCGGCGCGGGTGTTCCAGCTCACCCGCGAGCTGGGGCACAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCC
GCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCTCCGGCACCACCCCGGCCTCCTTCTCCACCTCCTCCCCCTCCTCG
CTCCGCCCCGGAGGCCCCGGCGCGGG---------------CCACGCGCACGCTCAGCCTCTCGCCGCCTCGCCGCACCC
CGGCCAC------CACCACCACCTCCCGCACGCCG-CGCCCTTCATCCTCGGCAAGCGCGCCCGCGAAGACGACGGC---
---AACGGCAACGGCGCGGCGTCCGGCGAGGCGGCGGCGGTCACCGCGGCCATGGGCCCGGCCCCGGGGTTCTGGGCGCT
GCCCGCGCGGGGCGACTTCGGGCAGCTGTGGAGCTTTGCGCCGCCGCCGGAGATGATGGTGGCGGCGCCGGCGATGGCGG
GGGAGGCCTCCGCCGCCCGGGTCGGCAACTACCTGCCCATGGCGCAGGCCAACCTGAACCTGCTCGCCTCCTTCTCCGGT
GGCCCCGGCGGCGCCGGCCAGGCCACCGGGCGGGCCGAAGAGGAGACCGCCCACTGA-----------------------
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>chr6A_1_TraesCS6A01G412800
CCGCCGCATCTAGGGGGGGC--AACCTGATACGTGTGCGGATGACATAATACCCTAGAGTCAGGGAAGACCATGTTTAGC
ATGTGCAGGTTTTTCTCCTAATAAGATGAATTTTTATTTTTATTGAAGCTTTTTTATTTTTTGTGGG--GGAATTATTTC
ACCAACGGTTACTCTAGGTAAAATCCAATGAATGAATTTATGGAAATGAATCAAAAGCAGCCAATGCGCCAGGTAAAGGC
CAGGCTGTCAAAAACGTCATCCCTG----GAAA----GAGGTAATTGCCGGTTTCCCGGTCCTGGCTCCGCTATAGACAA
CTCA-----------------TTACCCCACCCTCACACACACCACTCACTGACAACTCGGCTCCAGGGAAGCATGGCCCC
AGATGTCATCGGGAGAGAGTGGGGCTCACTGCTGTAC-GTCGAGCGTGGCGGGCGGGCCTGGCAGGGCCCAGCGCGGCCC
ATGTGGCCTCCCGTCCGCCTGTCTCCACTCCACTCCCCACCGGTGGCGCTCTCCTCAATCATTAACCCCCC--AACCCCA
CCCCACCCCACCCCCAGACCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN--------------------------------------------------------------------
-------------------------------------------------------------------------ACGGACC
GGAGGACAAGCAGCTCGTTCCGGTGTCC------GCGAACGGGACGAATGGCGGCGGCGGCGGC-------------GGC
GCGCTGGCGGTGCGCAAGGCGCCCTCCAAGGACCGGCACAGCAAGGTGGACGGCCGGGGGCGGCGCATCCGGATGCCCAT
CATCTGCGCGGCGCGGGTGTTCCAGCTCACCCGCGAGCTGGGGCACAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCC
GCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCTCCGGCACCACCCCGGCCTCCTTCTCCACCTCCTCCCCCTCCTCG
CTCCGCCCCGGAGGCCCCGGCGCGGG---------------CCACGCGCACGCTCAGCCTCTCGCCGCCTCGCCGCACCC
CGGCCAC------CACCACCACCTCCCGCACGCCG-CGCCCTTCATCCTCGGCAAGCGCGCCCGCGAAGACGACGGC---
---AACGGCAACGGCGCGGCGTCCGGCGAGGCGGCGGCGGTCACCGCGGCCATGGGCCCGGCCCCGGGGTTCTGGGCGCT
GCCCGCGCGGGGCGACTTCGGGCAGCTGTGGAGCTTTGCGCCGCCGCCGGAGATGATGGTGGCGGCGCCGGCGATGGCGG
GGGAGGCCTCCGCCGCCCGGGTCGGCAACTACCTGCCCATGGCGCAGGCCAACCTGAACCTGCTCGCCTCCTTCTCCGGT
GGCCCCGGCGGCGCCGGCCAGGCCACCGGGCGGGCCGAAGAGGAGACCGCCCACTGAACCGG--CGGCGGCGGCTGTGCA
GGGTTTTAGGCAGGGCTAGGGTTTC-TTCCCCTCCG--GGCGCAGATTGCTTCCTTTTGGGGTCA----ATTTCCATGGT
TCCTCCGGCAAGAGGAAAAGATTACTGAAGGTGTTCATCAGACAAGGTGG---------CGTCAGTCAA---TTCAGTGC
GAATTAAGCTTGCTCCTCTGCTCCCTCTCAGTTA----------AGTTCAGATGGTTAGGTCAGGTCAGGTCAGGTCAGG
TGAATTGGGTCTCTAAATTTCTGCGGGTAGCAACAGCAATTGTTGCTCCTTTTTTCATGTAAAAATCAATCATCATGGGT
CGAGGTCGTGTGGGTTCCTATTACTTTCTAGCCAGTCAGT-------------------------------CAAATGTAG
TTCCCTTTTCTCTCTTGGTTTGCTTTGTGCTGCTGATTCCAAGAAAGAA----GAAGAAGAAAAGGCTTGCACAAATCTC
AAATGT-CCACAATTCTGCATCAAGATGGAGGATGAGCAAGCATGGCCTTCAGTAAGTTGCACCTCTGCTCTGCTTCTTA
GGTCTTCTTTTTTCAGTTT------TTTTTCTTCATTTCTTTTGTGCTCTGGATTGAATTAGTGCTTGGTGAGAA---TA
ATAATAAGTGACTGTTG--TTAGCTCAGATAGCCAGCTCCTGTATGTATCTATCTTTTGATTGTTTGATGGGTGTGTCAA
TTGTGTGTCACCAGGAATGGAATTGATCAGTGGACAAAAATAATGAGACAGCCGATAGAAGAGTGCATCATCTGTCATGT
CCATCCAGCAGCACCCTCTCATCC-------------GCTACGTCTCTGTCTTTGCATCCTAGTATCATGCCACTGATTT
TCACTAT------------TATCATACCATTGTTTGCGAAATTCAGGTGGCGATGCACCCCAGCAGCTTGTTGTTTAG--
--------------------AAGTAATTGCATCGCATTGCCACTGGTTTTGCGGCTGCTGTTGCCGGCACTGTGATGTGT
TGTGCTGCATGTGCGGTCAGCTGTGGAGGTAGAATAATAATCGTAGGGAGTGGGGGCTCTAG
>chr6D_1
CCACCGCACCTAGGGGGGCGCGAGCCCGAAAAGTGTGCGGATGACATAACACCTTGGATCCAAGCAAGACCATGTTTAGC
ACGTGTAGACTTTTCTTCTGATAAGATGAATTTTTATTCTCACTGAAACATTTTTATTTCTGCGCGAATGGAATTATTTC
ACCAACGGTTCCTCTAGGTAAAATCCAAGGAATGAATTTATGGAAATGAATCAAACCCAGCCAATGCGCCAGGTAAAGGC
CAGGCTGTCAAAAACGTCACCCCTG----GAAAGAAAGAGGTAATTGCC-GTTTCCCGGTCCTGGCTCCGCTATAGACAA
CTCACAGCACCTCATTAGTCATTACCCCACCCGCACAGAAGACGCTCTCTGACAGCTGGGCTCCAGAGAAGGATGACCCC
ACCAGTCATGGAAAGAGAGTAGGTATTAGTGCTGTAGGGTCCAGTGTGGCGGGCGGGCCTGGCAGGGCCCAGCGCGGCCC
ATGTGGCCTCCCGTCCGCCTGTCTCCACTCCACTCCCCACCGGTGGCGCTCTCCTCAATCATTAACCCCCCCAACCCCAC
CCCGCACCCCACCCCAGACCCCCCCCCTCCCTCTCCACCACCATGACGACGAGGCCCGACGGCGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCGGCGGCGTGGGCGCCGGCGGCGACGGCGC
GGAGGGCAAGCAGCTGGTGCCGGTGGCGGCGGCGGCGAACGGGACGAAT------------GGC-------------GGC
GCGCTGGCGGTGCGCAAGGCGCCGTCCAAGGACCGGCACAGCAAGGTGGACGGCCGGGGGCGGCGCATCCGGATGCCCAT
CATCTGCGCGGCGCGGGTGTTCCAGCTCACCCGCGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCC
GCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCTCCGGCACCACCCCGGCCTCCTTCTCCACCTCCTCCCCCTCCTCC
CTCCGCCCC------CCCGGCGCCCCCCACCCGCAGCACCCCCACGCGCACGCCCAGCCGCTCGCCGTCTCCCCGCACC-
-----------------ACCACCTCCCGCACGCCG-CGCCCTTCATCCTCGGCAAGCGCGTCCGCGACGACGACGGC---
---AACGGCAACGGCGCGGCGTCCGGCGGGGCGGCGGCGGTCACCGCGGCCATGGCCCCGGCCCCGGGCTTCTGGGCGCT
GCCCGCGCGGGGCGACTTCGGGCAGCTGTGGAGCTTCGCGCCGCCGCCGGAGATGATGGTGGCGGCGCCGGCGATGGCGG
GGGAGGCCTCCGCCGCCCGGGTCGGCAACTACCTGCCCATGGCGCAGGCCAACCTGAACCTGCTCGCCTCCTTCTCCGGC
GGCCCCGGCGGCGCCGGCCAGGCCACCGGGCGGGCCGAGGAGGAGACCGCCCACTGAGCGGCGCCGGCGGCGGGTGTGCA
GGGTTTTAGGCAGGGCTAGGGTTTGTTTCTTCCCCGTCGGCGCAGATTGCTTGCTTTTGGGGTCAGTCAATTTCTATGGT
TCCTCCGGCAAGAGGAAAAGATTACTGAAAGTGTTCATCAGACAAGGCGGTGCTGGTACCGTCAGTCAA---TTCAGTGC
GAATTAAGCTTGCTCCTCTGCTCTCTCTATTCTCTTCTTCCCAGTTCA------GTTAGGTCAGGTCAGGTC--------
--AATTGGGTGTCTAAATTTCTGCGGGTAGCAACAGCAATTCTTGCTCCTTTTTTCATGTAAAAATCAATCATCATGGGT
CGAGGTCGTGTGGGTTCCTATTACTTTCTAGTCAGTTGG-------TCAGTGAGTGCAGTGGTGCTGCTGTCAAATGTGG
TTCCCTTTTCTCTCTTGGTTTGCTTTGTGCTGCTGATTCCAAGAAAGAAAGAAGAACAAGAAAGGCTTG-----------
--------CACAATTCTGCAGCAAGATGGAGGATAGGCAAGCATGG-CTTCAGTAAGTTGCTCCTCTGCTCTGTTTCTTA
GGTCTTTTTTTCTTTATTCTTGAGATTTTTC---GTTTCTTTTGTTCTCTGGATTGAATTAGTGCTTGGTGAGAATAATA
ATAATAAGTAACTGTTGGTTTAGCTCAGGTAGCCAGCTCCTGTATGTATCTATCTTTTGATTGTTTGATGGG--------
---TGTGTCACCATGGATGGAATTGATCAATGGACAAAAATAAGCACACAGAAGAAACATCTGCCCGTCCATCATCCTGT
CATGTTTGTTTGTGAATTGTGACCGCTCCTGCTCCTTGCAACGTCTCTGTC-TCGCATCCTAGTACCCTGCCACTCATAC
TTATTACCATATCATACCAC----TACCATTGTTTGCAAAATTCAA--------GCACC-CAGCAGCTACTTTC-TAGAA
CGGAATCAGACCTTTTCAGCAGGTAATTGCATCGCATTGCCACTGGTTTTGCGGCTGCTGTTGCTGCTAC-----TGTGT
TGTGTTGCATGTGCGGTCAGCTGTGGAGGTAGAATAAT---CGTCCCGAGTGGGGGCTCTA-
>chr6B_1
CCACCGCACCTAGGGGGGCGCGAGCCCGAAAAGTGTGCCGATGACATAGCACGTTGGATCCAAGGAAGACCATGTTTAGC
ACGTGTAGACTTTTCTTCTGATGAGATGAATTTTTGTTCTCATTGAAACATTTTT-TTTCTGCGCGAATGGCATTATTTC
AGCAACGGTTAGTCTAGGTAAAATCCAATGAATGAATTTATGGAAATGAATGAAAAGCAGCCAATGCGCCAGGTAAAGGC
CAGGCTGTCAAAAACGTCACCCCTGGAAAGAAA----GAGGTAATTGCCGGCTTCCCGGTCCTGGCTCCTGAC-------
------------------------CCACACCCACACAGAATCCACTCACTGACACCTGGGTTCCAGAGAAGCATGACCCC
ACCAGTCATGGAAAGAGAGTAGGGATCTGTGTTGTAGGGTCCAGCGTGGCGGCCGGGCCTGGCAGGGCCCAGCGCGGCCC
ATGTGGCCTCCCGTCCGCCTGTCTCCACTCCACTCCCCACCGGTGGCGCTCTCCTCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCG-------------------------------
------------------------------------------------TGGCGGCGGCGGCGTCGAACGGGGCGAATGGC
GCGCTGGCGGTGCGCAAGGCGCCGTCCAAGGACCGGCACAGCAAGGTGGACGGCCGGGGGCGGCGCATCCGGATGCCCAT
CATCTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCACAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCC
GCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCTCCGGCACCACGCCGGCCTCCTTCTCCACCTCCTCGCCCTCCTCC
CTCCGCCCC------CCCGGCGCCCCCCACCCGCAGCACCCCCACGCGCACGCGCAGCCGCTCGCCGTCTCCCCG-----
----CAC------CACCACCACCTGCCGCACGCCG-CGCCCTTCATCCTCGGCAAGCGCGTCCGCGACGACGACGGC---
---GGCGGCAACGGCAACGGCAACGGCCAGGCGGCGGCGGTGACGGCGGCCATGGCCCCGGCGCCGGGGTTCTGGGCGCT
GCCCGCGCGGGGCGACTTCGGGCAGCTGTGGAGCTTCGCGCCGCCGCCGGAGATGATGGCGGCGGCGCCGGCGATGGCGG
GCGAGGCCTCCGCCGCCCGGGTCGGAAACTACCTGCCCATGGCGCAGGCCAACCTGAACCTGCTCGCCTCCTTCTCCGGC
GGCCCCGGCGGCGCCGGGCAGGCCACCGGGCGGGCCGAGGAGGAGACCGCCCACTGATCCC--------GCGGCTGTGCA
GGGTTTTAGTCAGGGCTAGGGTTTC-TTCTTCCCCGTCGGCGCGGATTGCTTCCTTTTGGGGTCA----ATTTCCATGGT
TCCTCCGGCAAGAGGAAAAGATTACTGAAAGTGTTCATCAGACAAGGTGGTGCTGGTGGCGTCAGTCAAAAATTCAGTGC
GAATTAAGCTATGCTCTCTGCTCTCTCTCTCTCTCTCTCTAGTCAGTTCAGTTGTTTAGGTCAGGTCAGGTC--------
--AATTGGGTCTCTAAATTTCTGCCGGTAGCAACAGCAATTCTTGCTCCTTTTTTCATGTAAAAATCAATCATCATGGGT
CCAGGTCGTGTGGGTTCCTATTACTTTCTAGCAAGTCAGTTGGTCATCAGTGAGTGCAGTGGTGCTGCTGTCAAATGTAG
TTTGCTTTTCCTTCTTGGTTTGCTTTGTGCTGCTGATTCCAAGAAAGTAAGAAGAACAAGAAAAGGCTTGCACAATTTGC
AAAATGGCCACAATTCTGCATCAAGCTGGAGGATGAGCAAGCATGGTCTTCAGTAAGTTGCTCCTCTGCCCTGTTTCTTA
GGTCTTTT--------TTCTTCAGATTTCTCGTTGTTTCTTTTGTTCGCTGGATTGAATTAGTGCTTGGTGAGAA---TA
ATAATAAGTAACTGTTG--GTAGCTCAGATAGCCAGGTCCTGTATGTATCAGTG----GATTGTTTGATGGGTGTGCCAA
TTGTGTGTCACCATGGATGGAATTGATGAATGGACAAAAATAAGCACACAGAAGAAGTATTTGCCCATCCTGTCATCTT-
------------TGAATTGTGACTGCTCCTT------GCTAGGTCTCTGTC-TTGCATCCTAGTATCCTGCGACTCATAC
TTGCTCATACTTATTGTCATATCATACCATTGTTTGCAAAATTCAGGTGCCGATGCACC-CAGCAGCTTGTAGTTTAGAA
GGGAATCAGACCTTTTTAGCAAGTAATTGCATCGCATTGCCACTGGTTTTGCGGCTGCT---------------------
---------TGTGCGGTCAGCTGTGGAGGTAGAATAATAATCGTCCCGAGTGGGGGCTCTA-
>chr7A_920
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----------------------------------------------------------GGCGGC-------------GGC
GCGCTGGCGATGCGCAAGGCGTCGTCCAAGGACCGGCATAGCAAGGTGGACGGCTGGGGGCGGCGCATCCGGATGCCCAT
CATTTGCGCGGCGCGGGTATTCCAGCTCATGCGCAAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCC
GCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCTCCGGCACCACCACGGCCTCCTTCTCCACCTCCTCACCCTCCTCG
CTCCGCCCCGGCGTGTCC------------------CACCCCCACGCGCACGTGCAGCCGCTTGCCGCCTCCCCG-----
----CACCACCCGCACCACCACCTCCCGCACGACGCCGCCCTTCATCCTCGGCAAGCGCGTCCGCGACGACGACGGCAGC
GGCAACGGCAACGGCACCGCACCCGGCGAGGCGGCGGCAACA---GCGGCCATGGGCCCCGCCCCGGGCTTCTGGGCGCT
GCCCGCGCGGGCCGACTTTGGGCAGCTGTGGAGCTTCGCGCCGCCACCGGAGATGATGGTGGCGACGCCAGCGATGGCGA
GGGAGGCCTCCGCCGCCCGGGTCGGCAACTACCTCCCC-TGGCCCAGGCCAACGTGAACCTGCTCGCCTCCTTCTCCGGC
GGCC----------------------------------------------------------------------------
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>SNPs
--S-----S---------SS---S--S--S-S-----------------S---S-S--SS--S-----------------
-S---S--SS------S--S------------------S-S------S-S---------S-SSSS-S-------------
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-------------------S------------------------------------------------------------
--------------------------------S----S-SS-------------S--S--------S--------S----
-SSS-----S-SS-------S---S---S-------S----S--------------------------------------
--------------------------------------------------------------------------S---SS
---SSS---SS---------------------------------------------------------------------
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-----------------------------------------------------------------------------SS-
-----S---------S--S------S-S----------------------------------------------------
-----------------------S--------------------------------------------------------
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-----------S-SS--------SSS---------------------------S-----S-----------S-------S
SSSS--------------------------------------------------------S------S------------
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------------------------------------S-------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------S------------------S---S------------------
-----------------------------SS-S-----------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------S-----SS--S-----------------S--------------------SSSSSSSS
SS---------------------------------------S--------------------------------------
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--------------------------------------------------------S------------------S-SS-
---SSS----------------------------------------S--------------S-----------S------
------S----S-SSS--S------------S-SS----------S----------------------------------
---------S------------------------------------------------------------------S---
-------------S-S-------------S-------------SS-S----SS--S-S-SSS-SS----S-S-S--S---
-SSSSSS-SSSSSSSS-SSSSS-----------------------------S---------------S-------S--SS
-S----S------------------------------S-----------S---------S--------------------
----------------------------------------------------------------S-SS--SSSSS-----
----S---------------------------------------SSS--------------S
>forward_361
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---------------------TTACCCCACCCTCACACACA---------------------------------------
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>reverse_2607
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----------------------------------------------GACAGCCGATAGAAGAGTGCA-------------
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