>input_sequence_74651
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-------------------ATGTGTTGCTACGTGGGCAAGGCCACCAAGATCTTCCTCGGCCTCGTCACGGCGCTGCTGC
TCGCCGGCCTCGTCCTCGGCTTCGGCCTGGCCCACCGGACGCTCTGGGGAGGCCAGAAGGCTGAGCCAGCCTGCCGGTGG
CCGCGCTGCCAGCAGCAGCAGCAGCCGCCCCAGCAGCCGGGCCTCTACGGCGGCGGCGACCCGCTCCCGGTCGCGGGCAC
CACCACCACCGCGCCGCCGTCCAACCCGCTCACGGAGCCGGCTGTCGCCGTGTTCCCCGGGGTCGCCTCCTCCGCCGCCG
TG---CCGTCGGCGACGGCGAGCGTGCCGAACTTCGCGCCGCCCAGGCCCTACCCCGGGGTCGCTTCCTCCACGGCCGTG
CCGCCCGCGGTGCCGAGCGTGCCGAACTTGGGGCCGCCCAGCCCATTCCCAGGGGTCGCCTCCTCCACCGCCGTGCCGCC
CGCGGTGACTAGCGTGCCGAACTTGGGGCCGCCCAGCCCATACCCAGGGGCTGCCTCCTCCACCGCCGTGCCGCCCACGC
CGCACTTCGGGCCGCCCACGCCGCTCCCCATCGGTCCCGGCCCGTCCTCGCATCCATGA---------------------
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>chr2D_1_TraesCS2D01G479200
CCGGCCTCGTCCGCGACACTCCAGCAGCGGCGCAGGCCATCTGCGTCGAGCTTGAGGAGCTCGGGCCAGGGGATGGCGGC
GGCTGCGGGCGAGGCACGGCGTGGGGGCGGCGTGGAGACCTGAGCGGAGCCCCATGGCCGGCGGCGCCCCAGGCGGCTCC
C-ATGGCGCGCGGTGGCACGGCGACCCGAGCCGGAGCCCCATGGTTGGCGGCGCTCCAGGCGGATCCCGATGGCGCGCGG
CGGCGCGGCGACCTGAGCCGGAGC----------------------------------CCCAGGCTGCGGGCGCGGCGAC
CACGGGCGAAGCCCCATGGTGCAACGGCGACCACGGGCAGAGCCCTTTGGAGGCGCGGCGGCGACACTGCAAGGACCCGA
TTGCTTTTTTAAAATGATTCCAGGGACCCGATTGCTTTTTAAAAATATTTGTAGGGGCTAATCTGTAAAAATTCTGTTGA
TGAGGCGCTGACATGTGGCCCCCACAAGTCAGTTAACGGTGAAACAAATGGTCAACCAAACGGTGTGTTTAGTGGCGGGC
CCGACCTGTCATAAACATGTTTAATTTTTTAACAAAGAGAATTTGGGGTTTTTTAAAACAGCCAACCCCTGACTTTAATT
TTTTAACAAAGAGAATTTGGGGTTTTTTGAAACAGCCAACCCTGACTTGATAGTTATCTGAGAAAAATTAAAAAGTGGTA
GTTTTTTGGAACCATAGCATATAAACTAGTAGTTTTATGCTATTTACTCGTATCTCGCTAGTGTGCACGTGAAGCCATGC
ACGGGTGCTGGAG--------CCGACAGGCAGCACCAGCACTGAAAACAGAGCGAGGAGGCCGAGCCAAGTGCCCCCTCC
TCTCCTCTGCACTGGACCCCTTCTCTTTTCTCTCTCTCTCTCTCTCTCCCCATGCGTGCGCCATTGCTGCATGTTC----
------CTGCGAGAGAGTGGTAGCTGGAGAGTA--GCAGTCACACACTGACACGCCGAGAGGAAGAAGAGCAG----AGC
TCTGCCGTTTTCCAGTCCGATGTGTTGCTACGTGGGCAAGGCCACCAAGATCTTCCTCGGCCTCGTCACGGCGCTGCTGC
TCGCCGGCCTCGTCCTCGGCTTCGGCCTGGCCCACCGGACGCTCTGGGGAGGCCAGAAGGCTGAGCCAGCCTGCCGGTGG
CCGCGCTGCCAGCAGCAGCAGCAGCCGCCCCAGCAGCCGGGCCTCTACGGCGGCGGCGACCCGCTCCCGGTCGCGGGCAC
CACCACCACCGCGCCGCCGTCCAACCCGCTCACGGAGCCGGCTGTCGCCGTGTTCCCCGGGGTCGCCTCCTCCGCCGCCG
TG---CCGTCGGCGACGGCGAGCGTGCCGAACTTCGCGCCGCCCAGGCCCTACCCCGGGGTCGCTTCCTCCACGGCCGTG
CCGCCCGCGGTGCCGAGCGTGCCGAACTTGGGGCCGCCCAGCCCATTCCCAGGGGTCGCCTCCTCCACCGCCGTGCCGCC
CGCGGTGACTAGCGTGCCGAACTTGGGGCCGCCCAGCCCATACCCAGGGGCTGCCTCCTCCACCGCCGTGCCGCCCACGC
CGCACTTCGGGCCGCCCACGCCGCTCCCCATCGGTCCCGGCCCGTCCTCGCATCCATGAGAAGAT-------TTTTGGTT
GATTATTCTCTCTCGAGGCTGAGAAATTGTCGTCTTTTTTAATTTCTTTTTACTACTCGGTTTGGTGTACAATTCAGTTG
TATTTTTTATTTTATTTTTACTAGATAACTAACCTCAACACTAGTACTGTAATT-TTGTTACCTCCCTCTTTCTGAAATC
TGAGAAATAAACTAGCAAACGGAGGAGTATTTGTTTGCGCTTGCGGTGGAGGCTTTAATTTTGCTGCGGGGTCCGTATGC
TGTGAGCTTTCATCTGTCGGTGCCGGTCGTCGGGTGAATTAATTAAAGGAAAATGTATATTTTTCGTTCCTCAATTTTCT
CCCAAGTACATAAATGGTCATTCAACTCTAAAATCAGCATTTTATA----------------------------------
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---------------------------------------------------------------AAAAAAAACCCTAAAAT
CAGCAAATCTTAGTCTATCA-CTTCTTAAACCGGATAACTTTAATTCCTCCGTACCACT---------------------
TGGTTTTCGTTGGCATTTTATCAAACACCTATCATGCGCCTGCCCCATTTTCGGACCGGTGGCGTCGAGAGCCACACAAC
AGGTCTACGGCGTCCCCTTCTTCGACGCCGAGGCCACGCCCAGCACCCACCCAGCGTCTTGCACCCATCCACTGCCTCCG
ATGAGCGGCTTTGCGCAGTAGGCAAAAAAAAGACGCGTTGCAGATTGTGGCCGTCTCCACTCGAGGGTCACCGGTGCGTC
CC-GGGCGAGCGGAGGATGTCCATGGGCGACCTCGTGCACGGCCCTGCCGGCTGCTGCTGGACGAATCCACGCCCGGCCT
CGACTCCGGCAGTCCGTCTCCATGCTCCAAACTGTCGAGGCTGCTCAAGGACATGGCCACCGCCAATGGCAAACCAATCA
GGTGCTTCTCGAGCTCCTGGCGTACGCGGCTGAGGCACGAGCTCTTCTCCAAGCGAGTGTCGAGGCATGCCGGACAACAG
CGACGACGACTACAACAGTCCCATCATCCACGACCGACTC-GCTACGCTGGCGGGTCGCTTACGTGTG
>chr2D_1
CCGGCCTCGTCCGCGAGACTCCAGCAGCGGCGCAGGCCATCTGCGTCGAGCTTGAGGAGCTCGGGCCAGGGGATGGCGGC
GGCCGCGGGCGAGGCACGGCGTGGGGGCGGCGTGGAGACTTGAGCGGAGCCCCATCGCCGGCGGCGCCCCAGGCGGCTCC
C-ATGGCGCGCGGTGGCACGGTGACCCGAGCCGGAGCCCCACGGCTGGCGGCGCTCCAGGCGAATCCCGATGGCGCGCGG
CGGCGCGGCGACCTGAGCCGGAGCCCCACGGCGGCGCGCCCAGCGACCACCCCGGCCACCCAGGCTGCGGGCGCGGCGAC
CACGGGCGAAGCCCCATGGTGCAACGGCGACCACGGGCAGAGCCCTTTGGAGGCGCGGCGGCGACACTGCAAGGACCCGA
TTGCTTTTTTAAAATGATTCCAGGGACCCGATTGCTTTTTAAAAATATTTGTAAGGGCTAATCTGTAAAAATTCTGTTGA
TGAGGCGCTGACATGTGGCCCCCACAAGTCAGTTAACGGTCAAACAAATGGTCAACCAAACGGTGTGTTTAATGGCGGGC
CCGACCTGTCATAAACCTGTTTAATTTTTTAACAAAGAGAATTTGGGGTTTTTTGAAACAGCCAACCCCTGACTT-----
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>chr1D_1
CCGGCCTCGTCCGCGACACTCCAGCAGCGGCGCAGGCCATCTGCGTCGAGCTTGAGGAGCTTGGGCCAGGGGATGGCGGC
GGCCGCGTGCGAGGCACGGCGTGGGGGCGGCGTGGAGACCTGAGCGGAGCCCCATGGCCGGCGGCGCCCAAGGCGGCTCC
C-ATGGCGCGCGGTGGCACGGCGACCCGAGCCGGAGCCCCATGGCTGGCGGCGCTCCAGGCGGATCCCGATGGCGCGCGG
CGGCGCGGCGACCTGAGCCGGAGCCCCACGGCGGCACGCCCGGCG------------ACCCAGGCTGCGGGCGCGGCGAC
CACGGGCGAAGCCCCATGGTGCAACGGCGACCACGGGCAGAGCCCTTTGGAGGCGCGGCGGCGACACTGCAAGGACCCGA
TTGCTTTTTTAAAATGATTCCAGGGACCTGATTGCTTTTTAAAAATATTTGTAGGGGCTAATCTGTAAAAATTCTGTTGA
TGAGGCGCTGACATGTGACCCCCACAAGTCAGTTAACGGTCAAACAAATGGTCAACCAAACGGTGTGTTTAGTGGCGGGC
CCGACCTGTCATAAACATGTTTAATTTTTTAACAAAGAGAATTTGGGGTTTTTTGAAACAGCCAACCCCTGACTTGG---
--------------------------------------------------TAGTTATTTGAGAAAAATTAAAAAGTGGTA
GTTTTTTGGAACCATAGCCTATAAACTAGTAGTTTTATGCTATTTACTC-------------------------------
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>chr6D_1
CCGGCCTTGTCCGCGACACTCCAGCAGCGGCGCAGGCCATCTGCGTCGAGCTTGAGGAGCTCGGGCCAGGGGATGGCGGC
GGCCGCGGGCGAGGCACGACGTGGGGGCGGCGTGGAGACCTGAGCGGAGCCCCATGGCCTGCGGCGCCCCAAGCGGCTCC
C-ATGGCGCGTGGTGGCACGGCGACCCGAGCCGGAGCCCCATGGCTGGCGGTGCTCCAGGCGGATCCCGATGGCGCGCGG
CGGGGCGGCGACCTGAGCCGGAGCCCCACGGCGGCGCGCCCGGCGACCACCCCGGCCACCCAGGCTGCGGGCGCGGCGAC
CACGGGCGAAGCCCCATGGTGCAACGGCGACCACGGTTAGAGCCCTTTGGAGGCGCGGCGGAGACACTGCAAGGACCCGA
TGGCTTTTTTAAAATGATTCCAGGGACCCGATTGCTTTTTAAAAATATTTGTAGGGGCTAATCTGTAAAAATTCTGTTGA
TGAGGCGCTGACATGTGGCCCCCACAAGTCAGTTAACGGTCAAACAAATGGTCAACCAAACGGTGTGTTTAGTGGCGGGC
CCGACCTGTCATAAACATGTTTAATTTTTTAACAAAGAGAATTTGGGGTTTTTTGAAACAGCCAACCCCTGACTTGG---
--------------------------------------------------TAGTTATCTGAGAAAAATTAAAAAGTGGTA
GTTTTTTGGAACCATAGCGTGTAAACTAGTAGTTTTATGCTATTTACTC-------------------------------
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>chr7D_1
CCGGCCTCGTCCGCGACACTCCAGCAGCGGCGCAGGCCATCTGCGTCGAGCTTGAGGAGCTCGGGCCAGGTGATGGCGGC
GGCCGCGGGCGAGGCACGGCGTGGGGGTGGCGTGGAGACCTGAGCGGAGCCCCATGGCCGGCGGCGCCCCAGGCGGCTCC
CGATGGCGCGCGGTGGGGCGGCGACCCGAGCCGGAGCCCCATGGCTGGAGGCGCTCCAAGCGGATCCCGATGGCGCGCGG
CGGCACGGCAACCTAAGCCAGAGACCCACGGCGGCGCGCCTGGCGACCACCCCAGCCACCCAGGCTGCGGGCGCGGCGAC
CACGGGCGAAGCCCCATGGTGCAACGGCGACCACGGGCAGAGCCCTTTGGAGGCGCGGCGGCGACACTCCAAGGACCCGA
TTGCTTTTTTAAAATGATTCCAGGGACCCGATTGCTTTTAAAAAATATTTGTAGGGGCTAATCTGTAAAA-TTCTATTGA
TGAGGCGTTGACATATGGCCCCCACAAGTCAGTTAACGGTCAAACAAACGGTCAACCAAACGGTGTGTTTAGTGGCGGGC
CCGACCTGTCATAAACATGTTTAATTTTTTAACAAAGAGAATTTGGGGTTTTTTGAAACAGCCAACCCCTGACTT-----
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>chr2A_738
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----------------------------------------------------TCTCGCTAGTGTGCACGTGAAGCCATGC
ACGGGTGCTGGAGCGGTGGAGCCGACAAGCAGCACCAGCACTGAAAACAGAGCGACGAGGCCGAGCCAAGCTCCCCCTGC
TCTCCTCTCGACTCGACCCCTTCTCCTT--------TCTCTCTCTCTCCCCACGCGTGCGCCATTGCTGCATGTTCA---
-------TGTGAGAGAGTGGTAGCTGGAGAGTA--GCAGTCACACACTGACACAG----AGGAAGAAGAGCAGAGCTAGC
TCTGCCGTTTTCCAGTCCGATGTGCTGCTACGTGGGCAAGGCCACCAAGATCTTCCTCTGCCTCGTCACGGCGGTGCTGC
TCGCCGGCCTCGTCCTCGGCTTCGGCCTCGCCCACCGGACGCTCTGGGGAGGCCAGAAGGCTGAGCCAGCCTGCCGGTGG
CCGCGCTGCCAGCAGCAGCAGCCGA---------------GCATCGACGGCGGCGGCGGCCCGCTCCCGGTCGCGGGCAC
CACCACCAACGCGCCGCCGTCCAACCCGCTCACGGAGCCAGCCGTCGCCGTGTTCCCCGGGGTCGCCTCCTCCACCGCCG
CGGAGCCGCCGGCGACGGCGAGCGTGCCCTACTACGGGCCGCCCAGGCCCTTCCCCGGGGTCGCCTCCTCCACCGCCGTG
CCGCCAGCGGTGACAAGCGTGCCGTACTTCGCGCCACCCAGCCCGTTCCCCGGGGCGGCCTCCTCCACCGCCGTGCCGCC
CGCG------------CCGAACTTCGGGCCGCCCAGCCCGTTCCCCGGGGTCGCCTCCTCTGCCGCCGTGCCGCCCGCGC
CGCACTTCGGGCCGCCCAGCCCGTTCACCGTCGGCCTCGGCCCCTCCTCTCATCCATGATATTAACAGGTTATTTTGGTT
GAATTTTCTCTCCGGAAGATTAGATTTTTT--TGTGTTTTTTATTCTTTTTACTGCTGGT--------------------
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>chr2B_739
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-----------------------------------------------------CTCGCTAGCGTGCACGTGAAGCCATGC
ACGGGTGCTGGAG--------CCGACAAGCAGCACCAGCACTGAAAACAGGGCGACGAGGCCGGGCCAAGTGCCCCCTGC
TCCCCTCTCGGCTGGACCCGTTCT--------------TCTTTCTCTCTCCACGCGTGCGCCATTGCTGCATCTTCGACT
GAGACTCTGAGAGTGAGTGGTAGCTGGAGAGTAACGCAGTCACACACTGACACAGCGAGAGGAGGAAGAGCAG----AGC
TCTGCCGTTTTCCAGTCCGATGTGTTGCTACGTGGGCAAGGCCACCAAGATCTTCCTCGGCCTCGTCACGGCGCTGCTGC
TCGCCGGCCTCGTCCTCGGCTTCGGCCTGGCCCACCGGACGCTCTGGGGAGGCCAGAAGGCTGAGCCAGCCTGCCGGTGG
CCGCGCTGCCAGCAGCAGCAGCCGCCGCCGCAGCCGCTCTA---------CGGCGGCGACCCGCTCCCGGTCGCGGGCAC
CACCACCACCGCGCCGCCGTCCAACCCGCTCACGGAGCCGGCTGTCGCCGTGTTCCCCGGGGTTGCCTCCTCCACCGCGC
AC---CCGCCGGCGACGGCAAGCGTGCCGAGCTTCGCGCCGCCTAGGCCCTACCCCGGGGTCGCTTCCTCCACAGCCGTG
CCGCCCGCGGTGCCGAGCGTGCCGAACTTCGGGCCGCCCAGCCCGTTCCCCGGGGTCGCCTCCTCCGCCGCCGTGCCGCC
CGCGGTGACTAGCGTGCCGAACTTGGGGCCGCCCAGACCATTCGCCGGGGCTGCCTCCTCCACCGCCGTGCCGCCCGCGC
CGCACTTGGGGCCGCCCACACCGTTCCCCATCGGTCCCGGCCCGTCCTCTCATCCATGAGAAGAT-------TTTTGGTT
GATTATTCTCTCTCGAGGTTGAGAAATTGTCGTGTTTTTTAATTTCTTTTTACTACTCGGTTTGGTGTACAATTCAGTTG
TAT-----------TTTTTACTAGATAACTAACCTCAACACTAGTACTGTAATTTTTGTTACCTCCCTCTTTCTGAAATC
TGAGAAATAA-CTAGCAAACGGAGGAGTATTTGTTTGCGCTTGCGGTGGAGGCTTTAATTTTGCTGCGTGCTGCATATGC
TGTGAGCTTTCATCTGTCGGTGCCGGTCGTAGGGTGAATTAATTAAAGGGAAAAGTATATTTTC----CCTCAATTTTCT
TCAAAGCATAGAGATGATCCTTCAACTCTAAAACGAGTAACTCTAAAGCATAGAATGATTCTTCGAAGCATAGAAATGAT
CCTTCAACTCGTGTGAGGTGTTGCTACGTAGAATTAGGCTCGAGGGCTTAGTGTGGGTGTCGGCAGGCCTACTGAAAGGG
GATGTAAGCCCCTTCTTTAGTTGGCCGGCACGGTGATATAGACGTGAGGAGTAGCGTACTGTAATTAAACATCGTACTAT
GGTGGAGGCATTCTTTTGCCCTTCTTCTTTAATATATGATATGCACACTCGTGCATATTCGAGAAAAAAAACTCTAAAAC
CAGTAAATCTTAATCTCTTAGCTTCTTAAACCTGATAACTCCCTCGTCCCGCTTTAAGTGGTTTTGTTGATGACGTGGCA
TGGTTTTTGTTGGCATTGTATCAAACACCTATCATGCACCTGCCGCATTTTCAGACCGGTGGAGTAGAGGGCTACACAGC
ACGTCTACGACGTCCCCTTCTTCGACGCCGAGGCCACGCGCAGCACCCATCCAGCGTCATGCTGCCTTC----------G
ATGAGCTGCTTTGCGCAGTAGGCGAAGAGAAGATGCGTT-CAGTTTCCGGCCGTCGTCACTCGAGGGTCACCGGTGC---
----------------------------------------------------------------------------GCCT
CGACTCCGGCAGTCCGTCTCCATGCTTCAAACTGTCGAGGCTGCTCAAGGACATGGCCACCGCCAACGGCAAACCAATCA
GGTGCTTCTCGAGCTCCGGGTGTACGCGGCTGAGGCACGAGCTCCTCTCCAAGCTACTGTCAAGGTGTGCCGGACAACGG
CGACGGCGACTACAACAGTCCCATCATCCACGACCGACTT-GCCACGCTGGGGGGTCGCTTACGTGTG
>chr6B_2052
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TGGTTTTCGTTGGCATTTTATCAAACACTTGTCGTGCGCTTGCCACGTTTTCAGAT-GGTGGCGGCAAGGTCCGCACAGC
AGGTCCACGACGTGTCCTTCTTCGACGCCAAGGTCATGCCCAGCGTCGTGGTGGCCCTGTG-------------------
--GAGCGGCTTTGCGCAGCAGGCAAAAAGGAGACGCGTTGCAGGTTCT-GCCGTCGCCCGTCGAGGGTCACCGGTGCGTC
CTGGGGCGAGCGGAGGATGTCC----------TCGTGCACGGCCCTACCGGCTGCTGCTGCACGAGTCCACGTCCAGGCT
CGACTCCGTCAGTCAGTCTCCATGCTCCACACTGTCGAGGCTGCTCAAGGACATGGCCACCGCGCACGGCAAACCAATCA
GGTGCTTGTTG----CCGGGCGTACGCGACCGAGGCACCAGCTCCTCTCCGGGCGAGAGTCAAGGCGTGGCGGACAACGG
CGACAGCGACTAAAACAATCCAACCATCGACGACCGACTCCGCTATGCCGGCGG---GCTTACGTGTG
>SNPs
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---S----------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
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----------------------------------------S---------------------------------------
------------------------------------------------------S--------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
------------------S------------------------------SSS----------------------------
---------------------------S---------------------------S----------------------S-
--------SS---------------S--SSSSSSSS----------------S---------------------------
---------S-------------------------------------------SS-------------------------
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----------------------S------S----S--SSS--S--S----------------------------------
-------------------------------------------------------------------------S------
S-------S----------------------------------------------------------------S------
-----------------------------S--------------S-----S-----------------------------
-----------------------------------------S---S------------------------------S---
-------------------S---S-------------------------S------------------------------
------------------S--------------S----------------------------------------------
---SSSSSSSSSSS------------------------------------------------------------------
----------S---------------------------------------------------------S-S-S-S-----
------------------------------S------------------S---S---------SSSSS------------
S-S---S-S-S-S---S--S-------------SS--S-SS-SSS-----------------------------------
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------------------------------------------------------------------------S------S
---S--------S---S-S-------------S-------SSSSSSS-S-SS-SSS-S----------------------
--------------------------------------------S-------S----------------S--------S-
---------S---------------------------------------S--------S---SS--S--SSSSSSSSSS-
----------------------------S--------------S--S--------S------------------------
-S--------------------SSSSSSSSSS--------------S-------------S----S------S--S----
------------------------------------------------------------------S-------------
-----------------S--------------------------S----------------S----S-----------S-
-----S--------------------------------------------------------------
>forward_636
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--------------------------------------------------------AACAGCCAACCCCTGACTTT----
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>reverse_2470
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---------------------------------------------------------------------AGCCACACAAC
AGGTCTACG-----------------------------------------------------------------------
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