>input_sequence_74645
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----------------------ATGTCGCGGCAGGGCGTGGACGAGGAGGAGG---AGGACCAGAAGCCGGTGATCAAGC
CCGGCGTGCACGTGACACTCAAGGTGCGGAACACCGACGGCCACACCGTCTACCGCACCATGCGGCGGACGGAGCAGCTG
CAGAGCCTCATGGACTTCTACTACGCCAGCGTGCCGGCGGTCCAGCGCGGCACGGGGCGGTTCCTGTACGACGGCGGCCG
GCTGCGCGGCTGGCAGACGCCGGCGGAGCTCCAGATGGAGGACGGCGACGAGGTGGACTTCTTCACCGAGCTGCTGGGAG
GCGGCGGGACAAGCGCGCTCCCGAAAGCTGAGCGGGGCA------------TGGCGG------------CGGATCTCCGT
TTCGTCACGCTCAAGGTGGTCGATCAGGAGCAGCGCCTGGTCCGCCGCACCATCAGGATGACCGCCCAGCTCCAGATTGT
CATGGATGCGTACTACGACGAGGCGGGGGACGTCGTCAGAGGCACCGGCTCCTTCTGGTTCGAAAACGTTCGGCTGCGCG
GCGAGCGCACGCCGGCGTATTTCAAGCTGCAAGACGGGGACGCCATCGA---CTTTGAAACGCAGCTTGGCGGCGGGATC
CCGTTCTAG-----------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G202500
ATATGTTACCCCCCACTATAGAGGTAGTAACATAGTGGGTGTTTGGTTCCAGGGACTTTTTTGTGTTAGGACTAAAAAAG
TCCCTAAAAGTCCCTAGCAAAACAAAAAGGGGGGGCTTTTTTAGGACTTTTTGCTAAAAGTCCTTAGAAGCACCTCCTTG
AGAGTCTTTTTCAAAAAGTCCTAGGGACTAGAAAAAATCCTAGGACTAGAGAACCAAACACCACCATAGACTAGTAACAT
AGGCATGTTACTAGTCTATGTTACTACCCATTGTGGCTAGTCTAAGGAAATTCTAGCTAACCCTATCCTAAGCTTTCTCA
TTGTCCAGCTCAAGGATAATAGCCTCATATAACTGGATATATGTACCTCATGGGTGACTTCATGAGCAGTAATCACACTT
TCTAGTATAAATCTCTCTTTTATAAAAGCAGCTTGGTTGAGGGAAATAAGCATATCTCCGAGAGGGGAAACTCTACTTGT
CATGACCTTAGTGAAGATTTCAAAAGATCGATTGCTAAGGCTAATTTAGCCTAGCATCATTTTCTTTAAGGTTTAGAGCA
ACAATGGCAAAATTCAATCT-AAAAACATCGAAAGAACCATTTTCAAAATCTCCAACAG---------------------
----GAGCCACTTTTTTTAGCTTCCAACAAGAGCCACTTTCCACTTTTAATCGGAAAAGGTTAAAATCTTGGTAGAAAAG
GAAGGATAGGGG-AAGTGTAATTTGTT-CTGGCAGTATTTATGTTTTTTTT----------TCAACAGCGCTTTAATTTA
ACCTCTTCTTCGAGTA----------------------------------------------------------------
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----------------------------TAGTAGTAGTTGGAAAAGAACAAATGCCTGGTCGCTTCGATCCCTGCGCAGA
GTTTGATCGTTCAAGATCCCCGCATGGAGTTACTGTGGTGCGGCAACCGAAAGGTCCAGCGCCGATACGAATTCCCGGGT
TAATTAAACCACGGCCATTTTATAAGCAGCGCGCAGATCGCCTCCAGGCCAAACCATAGCAGAAGCCAACACAAGCACAT
TG------------GCGTAGACATGTCGCGGCAGGGCGTGGACGAGGAGGAGG---AGGACCAGAAGCCGGTGATCAAGC
CCGGCGTGCACGTGACACTCAAGGTGCGGAACACCGACGGCCACACCGTCTACCGCACCATGCGGCGGACGGAGCAGCTG
CAGAGCCTCATGGACTTCTACTACGCCAGCGTGCCGGCGGTCCAGCGCGGCACGGGGCGGTTCCTGTACGACGGCGGCCG
GCTGCGCGGCTGGCAGACGCCGGCGGAGCTCCAGATGGAGGACGGCGACGAGGTGGACTTCTTCACCGAGCTGCTGGGAG
GCGGCGGGACAAGCGCGCTCCCGAAAGCTGAGCGGGGCA------------TGGCGG------------CGGATCTCCGT
TTCGTCACGCTCAAGGTGGTCGATCAGGAGCAGCGCCTGGTCCGCCGCACCATCAGGATGACCGCCCAGCTCCAGATTGT
CATGGATGCGTACTACGACGAGGCGGGGGACGTCGTCAGAGGCACCGGCTCCTTCTGGTTCGAAAACGTTCGGCTGCGCG
GCGAGCGCACGCCGGCGTATTTCAAGCTGCAAGACGGGGACGCCATCGA---CTTTGAAACGCAGCTTGGCGGCGGGATC
CCGTTCTAGGCAGTAGTGCTCATATCATATTTGCATTGC----ACTTCACCAAGTGATCGCCGAGCTCTTTAGGG-AACG
CAAAATAAAATATGATGCATTTCGATGTTCCCGGTTTCAGTTCATTTCAATGTCGTCGTAGTTCTATCTTCACTCCGTTT
CTGGCTTCACAAACCACAGTGCTCATATGGTTTTCAGATGGTGGGTTGTAAAATACTTCCTCCGTTCCTAAATATAAGTC
TTTTTAAAGATTCACTAGATGGACTACATACGGAGCAAAATGAATGAATCTAAACTTAAAATGCATCTATATACATCCGT
ATGTGGTTCATAATGAAATCTCTACAAAGACTTATATTTAGGAACGGAGGGAGTACTATGTATCCAACTA---GTCATTT
CGCTGCGTTTGAGGGTCCTTTTTTATTCGAAAGATCTTCATATAAGATTTAGTCATTTAGATGGATTAAAATCGTTATGA
AATTATCCTATCTGGATTGCTTGGTTTGTATGACTGAATCATCATGCAAAAGAATTTCTAAGATTACTTTCCACTGTATT
T---TTTAGCTCTACATGTTCATTTTCAGGGCATGTACATATGCATTTTCAATACTTTATAAGATTTTTTTTGTGTGGAT
GCCAACCATTAGATCCTTGTACTCCCTTTTTTTATGACACGGCAATGCTACGTTTT---TTCTATTTCCAG-TTTGACTC
CTAAACTTCCTACTGAAGGTAATGAAGTTGAGCCCTGCTTAGCTTCAGCTTTTATCGACGGATTCCGCTTCCGCGCAGCA
GAATATGAACCAAAGGGCGAACCTAGCAAAATCTGATTCCAGAAATCCGCTGCCAAAATCTGAACCAAAAGCGGAAGCAG
CTCAAGACGTGCTTTCCAAAATCTGATTCCACTGCGGGCCAAAATCTGAAAAAGTTGTATCAGCTGGTTTGACAAATGAC
CTACATCTTTTTTACATCAGATTTTCCATAGTTGTTTTTCCACAGCAGATTTTCACAGCTGCTT
>chr2A_502
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---------------------AAAAGATCGATTGCTAAGGCTAATTTGGCCCGGCATCATTTTCTTTAAGGTTTAGAGCA
ACAATGGCAAATTTAGTCAAAAAAAACATCGAAAGAACCATTTTCAAAATCTCCAACAAGAGCCACTTTTTTAGCTTCCA
ACAAGAGCCACTTTTTTTAGCTTCCAACTAGAACCACTTTCCAGTTTTAATCA-AAAAAGTTAAAAGCTTGGTAGAAAAG
AAAGGATAGGGGGAAGTATAATTTGTT-CTGACAGTATGTACGTC-TTTTT----------TCAACAGCGCTTTCATTTA
ACCTCTTCTTTGAGTAGTATAGAGTAAATTGCATAAAACCACCACTTTAAGGGTTAGGTTTGCGAAAAACACTAGGATAC
AGTTTCTCTGCAGAAAACACCACATCTTGCGTAATTGTTTTGAAAAAATCACTGATAGGCGGATTTGGCTTGGTTAAGCG
TGTTTATGATAGATGAGGCCTTTTTCGCCTATGTGGCATAACATTTCGCGACACGTCAATTTTAATATAATTTTACAAAC
TAATCCATACATTTTACATAGACACCCCTAAATCAAAAAGAAAAAAATGTTATCAGCCCATGTGCACCCTCGCCACAGGT
TGGGGCGGTCAACGCAGCCGGCGCCGGGCTCCTCCTTGCGCAGGAGGCCAAATCGGGGGGAGGGGGCGGCACCCCTCGCC
GGATCCGGCAGCCAACGTTGGGCGGCTCCTCGCGCTGGAGGCCAAATCGGGGCCGCGGCACGGGATCCGGCAGCCCACGC
TGGGCATCTACTCGTGCGGGAGGTCAAATCGGGGCGGCGGCGCGGCATCCCTCGCCGGATCCGGACGAGGTGGCGACGGT
GGGGGCCAAATCGTGGCGACTGCGCGGCATCCCTCGCCGAAGGTGGCGGCGCCTGGAGCATGTGCGCGCACCAGCGTCGG
CGGCTCACGTGGTGGTGCACGGCCGCATGTGGTGCATCGAGGGCACCACCACCGTGGTGGAATGGAGCGGGGAGCGCCGG
GGCTGGCTCGAGGTGGGCCCTTACCCGCCTAGTCTCGAGGCCGGCATGGCGTGCGCAGTCGACCGGCGGCAGCGGCGGGT
GCGTGGTGGTGACCGACGCCACCGAGTTTGAAGAACGCTGCGGGAGCAAGGCTGACGAACGGTTTGTCCAGGGAGACGGG
GGAAGGGCCTGGGCGGTACGAGGAAAGGATGTTGGGGGTGTTTTTGCTTTTTGACCCATCTAGGGCTCTTTTTGGCAAAA
CGCTATGCCACATCAGAAAAAAAAGCCCCATCTATCATAAACGCACTTAACCGAGCCAAATCCATGATCAGTGATTTTTG
CAAAACAATTACACAAGATATAGTGTTTTTTGCAAAGAAACTGTATCCTAGCGTTTTTCGCAAATCTAAACCTCAAAGTG
GTGATTTTATGCCATTTACTCGGTAGTGTAGTAGTAGTTGGAAAAGAACAAATGCCTGGTCGCTTCGATCCCTGCGCAGA
GTTTGATCGTTCAAGATCCCCGCATGGAGTTACTGTGGTGCGGCAATCGAAAGGTCCAGCGCCGATACGAATTCCCGGGT
TAATTAAACCATTGCCATTTTATAAGCAGCGCGCAGATCGCCTCCAGGCCAAACCAAAGCAGAAGCCAACACAAGCACAT
CGCTCGATCCAC---CGTAGGCATGTCGAGGCAGGACGTGGACGGCGAGGAGGGGGAGGACCGGAAGCCGGTGATCAAGC
CCGGCGTGCACGTGACGCTCAAGGTGCGGAACACCGACGGCCACACCGTCTACCGCACCATGCGTCGGACCGAGCAGCTG
CAGAGCCTCATGGACTTCTACTACGCCAGCGTGCCGGCGGTCCAGCCCGGCACGGGGCGGTTCCTCTACGACGGCGGCCG
GCTCCGCGGATGGCAGACGCCTGCGGAGCTCCAGATGGAGGACGGCGACGAGGTGGACTTCTTCACCGAGCTGCTGGGCG
GCGGCGGGACAAGCGCGCTCCCGAAAGCTGAGCGGAACATGGCGTCGCCGTTGGCGG------------CGGATCTCCGG
TTCGTCACGCTCAAGGTGGTGGACCAGGAGCAGCGCCTGGTCCGCCGCACCATCAGGATGAACGCCGAGCTGCAGATCGT
CATGGATGCGTACTACGACGAGGCGGGGGACGTCGTCAGAGGCACCGGCTCCTTCTGGTTCGAAAACGTTCGGCTGCGCG
GCGCGCGCACGCCGGCGTATTTCAAGCTGCAAGACGGGGACGCCATCGACTTCTTTGAAACGCAGCTTGGCGGCGGGATC
CCGGTCTAGGCAGTAGTGCTTATTTCATATTCTCATTGC----ACTTCACCAAGTGATCGCCGAGCTCGTTAGGG-AACG
CAAAATAAAATATGATGCATTTCGATGTTCCCGGTTTCAGTTCATTTCAATGTCGTCATAGTTCTATCTTCACTCCGTTT
CTGGCTTCACAAACAACAATGCTCATTTGATTTTCAGATAGTGGATGGTAAAATG-------------------------
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-------------------------------------------------------CTATGTATCCAACTA---GTCATTT
CGCTGTGTCTAAGGGTCCTTGTTTATTCAAAAGATCTTCATATAAGATGTGC-CATTTATAAGGATTAAAATCGTTATGA
AATTATCCTATCTGGATTGCTTGGTTTGTA--------------------------------------------------
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>chr2B_687
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------------------------------------------------------------------------TAGAAAAG
GAAGGATGGTGGGAAGTGTAATTTGTTTCTGACAGTATTTATGTT-TTCTTTTTTTTTTGGTCAACAGCGCTCTCGTTTA
ACCTCTGCTTGCTTTGGTGAGTAAAA------------------------------------------------------
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----------------------------------TAGTTGGAAAAGAACAAATGCCTGATCGCTTCGATCCCTGCGCAGA
GTTTGATCGTTTTAGATCCCCGCATGGAGTTACTGTGGTGCGGCAATCGAAAGGTCCAGCGCCGATACGAATTCCCGGGT
TAATTAAACCACGGCCATTTTATAAGCAGCGCGCAGATCGCCTCCAGGCCACACCAAAGCAGAAGCCAACACAAGCACAT
CGGTCGCTCTCGCCGCGTAGGCATGTCGCGGCAGGGCGTGGACGAGGAGGAGG---AGGATCGGAAGCCGGTGATCAAGC
CCGGCGTGGACGTGACGCTCAAGGTGCGGAACACCGACGGCCACACCGTCTACCGCACCATGCGGCGGACCGAGCAGCTG
CAGAGCCTCATGGACTTCTACTACGCCAGCGTGCCGGCGGTCCAGCGCGGCACGGGCCGGTTCCTGTACGACGGCGACCG
GCTGCGCGGCTAGCAGACGCCGGCGGAGCTCCAGATGGAGGACGGCGACGAGGTGGACTTCTAAACCGAGCTGCTGGGCG
GCGGCGGGACAAGCGCGCTCCCGAAAGCTGAGCGGAGCA------------TGGCGTCCCCGTTGGCGTCGGATCTCCGG
TTCGTCACGCTCAAGGTGGTCGACCAGGAGCAGCGCCTGGTCCGCCGCACCATCAGGATGAACGCCCAGCTCCAGATCGT
CATGGATGCGTGCTACGATGAGGCGGGGGACGTCGTCAGAGGCACCGGCTCCTTCTGGTTCGAAAACGTTCGACTGCGCG
GCGAGCGCACGCCGGCGTCTTTCAAGCTGCGGGACGGGGACGCCATCGACTTCTTTGAAACGCAGATTGGCGGCGGGATC
CCCGCCTAGGCAGAAGTGCTGATGTCATATTTGCCGGATGGATACTTCACCAAGCGATCGCCGTGCTCGTTGGGAAAACG
GAAAATAAAATATGATGCACTTTGATATTCCCGGTTTCAGTTCATTTCAATGTCGTTATAGTTCTATCTGCACTCCGTTT
CTAGCTTCACAAATCACAATGCTCAT--GATTTTCAGATAGTGGGCCGTAAAATC-------------------------
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-------------------------------------------------------CTATGTATCCATTTCAATGTCATTT
CGCTGCGTTTGAGGATACTTTTTTATTTGAAAGATCCTCATATAAGATGTAGTCATTTAGAAGGATTAAAATTGTTATGA
AATTTTCC--TCTGGGTTGCTTGGTTTGTATGATTGAATCAGGA-----------TTCAAAGATTAATTTCCACTGTATT
TGATTGTAGCTGTACATATTCAATTTCAGAATAGAA------------------------------TTTTTGGTGTGGAT
GCCAACTTTTGAATCCTTGTA----CTTTTTGTATGACATGGCAATGCGCTTTTTTTCATTCTATTTCCAGTTTTGACTC
CTAAACTTCCTACTGAAGGTGGTGAAGCTGAGCCCTGCTTAG--------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS--------------------------S---SS---------------------------
-----------S--SSSSSS--------------------------------------S---------------------
----------------------------S---S----------S--------SS----S-------S-------------
-------------------------------S-------------S----------------------------S-----
----------S---------------------------------------------------------------------
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----------------------------------------------S---------------------------------
--------------------------------------------------------S-----------------------
S-------------------S-----------------------------------------S-----------------
----------------S-----------------------------------------------------S---------
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------------------------------------------------------------------------------S-
-----------------------------------S-------------------------------------------S
-----------------------S-------------------------------------S---------------S--
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---S----------------S--S--------------------------------------------S-----------
---------------------------------------------------------S----------------------
------------------S-------S--S---------S------S-------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
------------------------------------------------S------------S------------------
---------------------------------S-------SS-SSSSSSSSSSS---S-------S-------------
-----S-----S-----S----S------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------
------SS--SS---------SSSS------S-------S--------SSSS----------------------------
--------------------SS-----S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_53
---------------------------------AGTGGGTGTTTGGTTCCAGG---------------------------
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>reverse_2560
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-------------------------------------------------------------------------------T
TTCGTCACGCTCAAGGTGG-------------------------------------------------------------
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>forward_57
-------------------------------------GGTGTTTGGTTCCAGGGACT-----------------------
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>reverse_2638
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-----------------------------------------------------------------------------TGT
CATGGATGCGTACTACGA--------------------------------------------------------------
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>forward_444
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------------------------AAAGCAGCTTGGTTGAGGGA------------------------------------
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>reverse_3636
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-----------------------------------ATTCCAGAAATCCGCTGCCA-------------------------
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