>input_sequence_74643
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----ATGGACGGCGGCACCGCCACCGTCTGCTCCATGTGCGGGGACATCGGCTTCCCCGACAAGCTCTTCCGGTGCGCGC
GCTGCCGCTACCGCTTCCAGCACTCGTACGTAT----------------------------CTCTTCTTCTTCCTCCCCC
-TCGCTCTCCTCCGCCACTTCTTGATATGAATGGATGAGTCACCGTCACTCACCATCCCAACACTAGCTTCTTGATATGA
ATGGATGAGGAACTCTCATGGATGAGGGAACAAAACACTAGCTAGTATATGTATGTTTTCTAGCTAATCTTGCAGTAGTA
GTAGTTCATCTTTCTCATATATGCGGTGCTTGCATGCAGCTATTGCACGAACTACTATGGCGACGGGGCACCGGCCTCGG
CGGGGGCTGATATGTGCGACTGGTGCCTCAGCGACGTCTCCGGGAAGGCCAGGAGGAGCGCGTCGACTTCCGGGAGGCAG
CAGGCCTCCGTCAGCCAGGATTCGGCCATGACGGGCTACTCCGGCAGGATCGACAAGGCGGCAACCGGCGGCGACCAGGA
GAGCGGGCGCCGAGGGTCGACCAAGGTGGGAGGCCGCAGGTACAAGCTGCTCAAGGACGTCCTTTGTTAG----------
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>chr2B_1_TraesCS2B01G432600
CTCATATATACGCACGTACACTCTTATGTATGAACGCACAGATGCACACCCTACCCCTGTGAGGACCTCTGAAAGACTGG
GCTGACACAACATCTTATGATTAACGAAGTCATTACAGAAGCCTTCATAGTCGACGGAACGTATTTTCCCACCGAATGCA
CATCACCTGAATGCCTGAAATAAATTCAATAAATGCGAGCACGGGTGTATAGGAGTTGAACCCTGATGGGCTAGGATAG-
---GACCTCCTAACCATCCAACCGAACCTTGCTTCGCAAGCAAGCTGGAGCTAGTAGCAAATAGGCTAGCTAAATTTGTT
TCGGTCGAAATCCAGTTGGTACTTTCGTGAAAGCGTCACCATAGAACCGACTTATTTGGGGGGAAAGGACACCTAAAACG
CGTACGTGCACGGTTCATCTATACAACAACACGGAG----TAGCAGCTTAGGCAATTAGAGTACACGCAGTGTCCACTAA
A---TGTACGTTTCATTTCCCGCAAAAAAAAAATCGTTCGGCAGTTTCTTGCCGCTTTTCGCGCTTACTAGTAGTAAAAC
TGGAAAGACGTCGACCCGGAGACATTCATGTGTAGCTTCAGCGCACCCAGCATGCATCTTCCGTTTCTTTTCAACTTGAC
TTGGCTAGAAGTTTTTCTCGGCGTCTTGAATCTGGATCCTGG-AGCGGTGGTGAGCACTGGTGCTCGCAT----ATGCAT
GCACCGACTCGGGTAGATCTATCTAGCCAATTCA--------CCGTGCAATAAGA--TTTTTTTATATATGCTGCCGTGC
GTTGTTTGAGATGGGTGTGTACTGTCTGCTCGCTGGGTTAAGGTTGTCGTGTGCGCCCCCCTTCCTCCGCCTCTCCACCT
TTCTCTCTCTCGTATTTAATACGCCTCGGGCCCTCTTCAGTCCTCACCCCT--------------CTCCCCTCCCGCCTC
CTACCCAACCCATCTTCTGTCCCTGAT----ATTCCTTCCTGATCTTGCCTCGCTCTTGTGCTACCTCTACATCCCATCT
CCCCATGGACGGCGGCACCGCCACCGTCTGCTCCATGTGCGGGGACATCGGCTTCCCCGACAAGCTCTTCCGGTGCGCGC
GCTGCCGCTACCGCTTCCAGCACTCGTACGTAT----------------------------CTCTTCTTCTTCCTCCCCC
-TCGCTCTCCTCCGCCACTTCTTGATATGAATGGATGAGTCACCGTCACTCACCATCCCAACACTAGCTTCTTGATATGA
ATGGATGAGGAACTCTCATGGATGAGGGAACAAAACACTAGCTAGTATATGTATGTTTTCTAGCTAATCTTGCAGTAGTA
GTAGTTCATCTTTCTCATATATGCGGTGCTTGCATGCAGCTATTGCACGAACTACTATGGCGACGGGGCACCGGCCTCGG
CGGGGGCTGATATGTGCGACTGGTGCCTCAGCGACGTCTCCGGGAAGGCCAGGAGGAGCGCGTCGACTTCCGGGAGGCAG
CAGGCCTCCGTCAGCCAGGATTCGGCCATGACGGGCTACTCCGGCAGGATCGACAAGGCGGCAACCGGCGGCGACCAGGA
GAGCGGGCGCCGAGGGTCGACCAAGGTGGGAGGCCGCAGGTACAAGCTGCTCAAGGACGTCCTTTGTTAGAAACTAGTTT
---TAGGCGCCATCTTGCAGGCCTCATCGAGCATGACCCA--AGTACGACCAGCTAGTTATGAGGAGTTAGCTTGTAGCC
AAGGTCGGTAGT--TATATTAGTTTGATCGATGTGCATATATGAGTATTGTATATGTTTGTTTTCTTATGTGTTACTTAG
GAGTAAGCATCTGCTCGCTTATAGTAAGTACTCTGGCTTGGTAAACCTTATCTTATGCTGTTTGTTTGTGTGGCCACAGT
TTATCTAGCACGTACTCTCTTGTTCTCTTGTGCCGGTAATCTTTTGTTTGTTCATATTGGATGCATGCTTACATACTCCT
CATTGGTTTTTTCTACTGCATGTTACGTGATTACTTTGCTGTCCTCTTCTCAACTTTGTTCTTAAAACGCTCGTGCATCG
TGCATGAATCGAGTGGTAATGACAACGAAGTCGCCGTACGTTGCATACATATGGGGAATTAAGGATGCCATAG---CAAT
ACCTTGCATCTCTAGGAGTCTAGGTACCAGCACGCATGGTGCATGCATGCATG-----CATGCACTAGCTGCTGTTCCCG
CCCGTACACGCATGTACCAGTGATTTCCCGAACCCAAGGCCGTGGGAGAGGCCGG-------CCGGAGCTAGGTAGCACG
CTGCATGCTGCCAAGGCGATCGGGCCGGCCGGCCAGCCACAGCCAGGGTCGATGCATGTAGCAGTCAACGGGTCGTACCA
GGCAGGACCGGCCGGTGGAAGTGGCCGACAAACCCATGCGTGCTCCCCTCCACTTGCATGCGCTGCTAGGTTAATTATCC
CGCGCCTCTGCGTGCATGGCTGCCTAGCTAGCTCGGTCGTTAATTAGCTTCCAAATCTACACCTGATAATAAGTTAAATA
AAAGAGATAGAGATATGCAGTGGCTAAAAGGTTTCTATGCCACGCTCACTCTTCTCCTCCTTTTATACTAATC-------
------------------------------------------------------AATCTTGTTCGATTTGCTCGTGATGC
CCTGTCCACGTCGATCGATTCGATGGTAGTACG
>chr2D_1
CTCATATATACGCACGTACACTCTCCTGTATGAACGCACACATACACACCTTATCCCTGTGAGGACCTCCAAGTGACTGG
GCTGACACAACATCTTATGATT-------------------------TAGTCGACGGAACATCTTCTCCCACTGAATGCA
CATCACTTGAATGCCTGAAATAAATCCAATAAATGCGAGCACAGGTGTCTAGGAGTTGAACCCTGATGAGCTAAGATAGC
AATGACCTCCTAACCATCCAACCGAACCTTGCTTTGCAAGCAAGCTGGAGCTAGTAGCAAATAGGCTAGCTAAATTTGTT
TCGGTCGAAATCCAGTTGGGACTTTCGTGAAAGCGTCACCATAGAACCGACTTATTTGGGGGGAAAGGACACCTAAAATG
CGTACGTGCACGGTTCATCTATACAACAGCTCGGACTAGCTAGCAGCTTAGGCAATTAGAGTACACGCAGTGTCCACTAG
TAACTGTACGTTTCATTTCACATGCCAATC-AATCGTTCGGCAGTTTGTTGCCGCTTTTCGCGCCTACTAGTAGTAAAAC
TGGAAAGACGTCGACCCGGAGATATTCATGTGTAGCTTCAGCCCACCCAGCAT-------CCGTTTCTCTTCAACTGGAC
TTGGCTAGAAGTTTTTCACGGCGGCTTGAATCTTGATCATGGAAGCGGTGGCAAGCACTGGTGCCCGCAT----ATGCAT
GCACCGACTCGGGTAGATCTATCTAGCCAATTCAGCAATTCACCGTGCAATGAGAATTTTTTTTATATATGCTGCCGTGC
GTTGTTTGAGATGGATGTGTACTGTCTGGTCGCCGGGTTAAGGTTGTCGTGTGCGCCCCCCTTCCTCCACCTCTCCACCT
TTCTCTCTCTCGTATTTAATACGCCTCGGACCCTCTTCAGCCCTCACCCCTACATGTCCACCCCTCTACCCTCCCGCCTC
CCACCCAACCCATCTTCTGTCCCTGATAGACATTCCTTCCTGATCTTGCCTCGCTCTTGTGCTACCTCCACATCTCATCT
CCCCATGGACGGCGGCACCGCCACCGTCTGCTCCATGTGCGGGGACATCGGCTTCCCCGACAAGCTCTTCCGGTGCGCGC
GCTGCCGCTACCGCTTCCAGCACTCGTAAGTAT----------------------------CTCTTCTTCTTCCTCCCCC
CTCGCTGCCCTCCGCCACTTCTTGATATGAATGGATGAGTCACCGTCACTCACCATGAGTGACCAAC-------------
-----------------------------------CACTAGCTAGTACATGTATGTCTTCTAGCTAATCTTGCACTAGTA
CATCG--ATCTTTCTCATATATGCGGTGCCTGCATGCAGCTATTGCACGAACTACTACGGCGACGGGGCACCGGCCTCGG
CGGGGGCCGACATGTGCGACTGGTGCCTCAGCGACGTCTCTGGGAAGGCCAGGAGGAGCGCGTCTACATCTGGGAAGCAG
CAGGCCTCCGTCAACCAGGATTCGACCACGACGGGCTACTCCGGCAGGATCGACAAGGCGGCAACCGGCGGCGACCAGGA
GAGCGGGCGGCGAGGGTCGACCAAGGTGGGAGGCCGCAGGTACAAGCTGCTCAAGGACGTCCTTTGTTAGAAACTAGTAG
TTGTAGGCGCCATCTTGCAGGCCTGATCGAGCATGACCCATAAGTAAGACCAGCTAGTTATGAGGAGTTAGCTTGTAGCC
AAGGTCGGTAGCTATATATTAGTTTCATCGATGTGCATATATGAGTACTGTATATGTTTGTTTGCTTATGTGTTACTTAG
GAGTAAGCATCTGCTCGCTTATAGTAAGTACTCTGGCTTGGTAAACCTTATCTTATGCTGTTTGTTTGTGTGGCCACAGT
TTATCTAGCACGTACTCCCTTGTTCTCTTGTGCCGGTAATCTTTTGTTTGTTCATATTGGATGCATGCTTACATACTCCT
CATTGGTTTTTTCTACTGCATGTTACGTGATTACTTTGCCGTCCTCTTCTCAACTTCGTTCTTAAAACACTCGTGCATCG
TGCATGAATCGAGCGGTAATGACAACGAAGTCGCCGTACGTAGCATACATATGGGGAATTAAGGATGCCATAG---CAAT
ACCTTGCATCTCTAGGAGTCTAGGTACCAGCACGCATGGTGCGTGCATGCGTGCATGCCATGCACTAGCTGCTGTTCCCG
GCCGTACACGCATGTACCAGTGATTTCCCGAACCCAAGGCCGTGGGAGAGGCCGGCCGGAGGCCGGAGCTAGCTAGCACG
CTGCATGCTGCCAAGGCGATCGAGCCGGCCGGCCAGCCACAGCCAGGGTCGATGCATGTAGCAGTCAACGAGTCGTACCA
GGCAGGACCGGCCGGTGGAAGTGGCCGACAAACCCATGCGTGCTCCCCTCCACTTGCATGCGCTGCTAGGTTAATTATCC
CGCGCCTGTGCGTGCATGGCTGCCTAGCTAGCTCGGTCGTTAATTAGCCTCCAAATCTACACTTG---ATAAGTTAAATA
AAAGAGATAGAGATATGCAGTGGCTAAAAGGTTTCTATGCCACGCTCACTCTTCTCCTCCTTTTATACGTTCTCCCTATG
TAAAGAAATATAAAAGCGTTTAGATCACCATAGTACAGAGGGAGTACTAATCTTAATCTTGTTCGATTTGCTCGTGATGC
CCTGTCCACGTCGATCGATTCGATGGTAGTACG
>chr2A_128
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-----------------------------------------------TAGTCAACGGAAGGTCTCTTCCCACTGAATGCA
CGTCACCTGAATGCCTGAAATAAATCTAATAAATGCGAGCACGAGCGTCTAGGAGTTGAACCCTGATGAGCTAAGATAGC
AATGACCTCCTACCCATCCAACCGAACCTTGCTTCGCAAGCAAGTAGGAGCTAGTAGCAAATAAGCTAGCTAAATTTGTT
TCGGTCGAAATCCAGTTGGGACTTTCGTGAAAGCGTCACCATAGAACCGACTTATTTGGGGGGAAAGGACACCTAAAATG
CGTACGTGCACGGTTCATCTATACAACAACACGGACTAGCTGGCAGCTTAGGCAATCAGAGTACACGCAGTGTCCACTAG
TAATTGTACGTTTCATTTCACATGCCAATC-AATCGTTCGGCAGTTTCTTGCCGCTTTTCGCGCCTACTAGTAGTAAAAC
TGGAAGGACGTCGACCCGGAGACATTCATGTGTAGCTTCAGCGCACCCAGCAT-------CCGTTTCTTTGCAACTGGAT
TTGGCTAGAAGTTTTTCTCGGCGTCTTGAATCTCGATCCTGG-AGCGGTGGCAAGCACTGGTGCCCGCATATGCATGCAT
GCACCGACTCGGGTAGATCTATCTAGCCAATTCA--------CCGTGCAATAAG-ATTTCTTTTATATGTGCTGCCGTGC
GTTGTTTGAGATGGATGTGTACTGTCTGGTCGCCGGGTTAAGGTTGTCGTGTGCGCCCCCCTTCCTCCGCCTCTCCACCT
TTCTC--TCTCGTATTTAATACGCCTCGGGCCCTCTTCAGCCCTCACCCCTACATGTCCACCCCTCTCCCCTCCCGCCTC
CCACCCAGCCCATCTTCTGTCCCTGGTAGACATTCCTTCCTGATCTTGCCTCGCTCTTGTGCTACCTCCACATCTCATCT
CCCCATGGACGGCGGCGCCGCCACCGTCTGCTCCATGTGCGGGGACATCGGCTTCCCCGACAAGCTCTTCCGGTGCGCGC
GCTGCCGCTACCGCTTCCAGCACTCGTAAGTATTCCTCCACTGCCCACACCATCCGTCCATCTCTTCTTCTTCCTCCGCC
C------------------------------------------------------------------CTTCTTGATATGA
ATGGATGAGGAACTCTCATGGATGAGGGAAC-AAACACTAGCTAGTATATGTTTGTTTTCTAGCTAATCTTGCAGTAGTA
GTAGTACATCTTTCTCATATATGCGGTGCTTGCATGCAGCTATTGCACGAACTACTACGGCGACGGGGCACCGGCCTCAG
CCGGGGCCGACATGTGCGACTGGTGCCTCGGCGACGTCTCCGGGAAGGCCAGGAGGAGCGCGTCTACATCCGGGAAGCAG
CAGGCCTCCGTCTGCCAGGATTCGGCCACGACGGGCTACTCCGGCAGGATCGACAAGGCGGCAACCGGCGGCGACCAGGA
GAGCGGGCGGCGAGGGTCGACCAAGGTGGGAGGCCGCAGGTACAAGCTGCTCAAGGACGTCCTGTGTTAGAAACTAGTTT
---TAGGCGCCATCTTGCAGGCCTGATCGAGCATGACCGATAAGTAAGACCAGCTAGTTATGAGGAGTTAGCTTGTAGCC
AAGGTCGGTAGT--TATATTAGTTTGATCGATGTGCATATATGAGTATTGTATATGTTTGTTTGCTTATGTGTTACTTAG
GAGTAAGCATCTGCTCGCTTATAGTAAGTACTCTGGCTTGGCAAACCTTATCTTATGC----TGTTTGTGTGGCCACAGT
TTATCTAGCACGTACTCTCTTGTTCTCTTGTGCCGGTAATCTTTCGTTTGTTCACATTGGATGCATGCTTACATACTCCT
AATTGGTTTTCTCTACCGCATGTTACGTGATTACTTTGCTGTCCTCTTCTCAACTCTGTTCTTCAAACACTCGTGCATCG
TGCATGAATCGAGTGGTAATGACAACGAAGTCGCCGTACGTTGCGTATATATGGGGAATTAAGGATGCCATAGTCCCAAT
ACCTTGCATCTCTAGGAGTCTAGGTACTAGCACGCATGGTGCGTGCATGCATGCATGCATCC--CTAGCTGCTGTTCCCG
GCCGTACACGCATGTACCAGTGATTTCCCGAACCCAAGGCCGTGGGAGAGGCCGGCCGGAGGCCGGAGCTAGGTAGCACG
CTGCATGCTGCCAAGGCGATCGAGCCGGCCGGCCAGCCACGGCCAGGGTCGATGCATGTAGCAGTCAACGAGTCGTACCG
GGCAGGACCGGCCGGTGGAAGTGGCCGACAAACCCATGCGTGCTCCCCTCCACTTGCATGCGCTGCTAGGTTAATTATCC
CGCGCCTCTGCGTGCATGGCTGCCTAGCTAGCTCGGTCGTTAATTAGCCTCCAAATCTACACCTGATAATAAGT----TA
AAAGAGATAGAGATATGCAGTGGCTGACAGGTTTCTATGCCACTCTCAGTCTTCTCCTCCTTTTATACGTAC--------
-----------------------------------------------------TAATCTTGTTCGATTTGCTCGTGATGC
CCTGTCCACGTCGATCGATTCGATGGTA-----
>SNPs
------------------------SS--------------S--S------S--S---------------SS-SS------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSS---------------S---------S-------
-------------------------S----------------------S-------------------S----S------
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-------------------S----------------------------------------------------------S-
-----------------------------------S-------------------------------------------S
S------------------S-SSSSS--SSS---------------------------------S---------------
-----------------------------------------------------SSSSSSS----------------S---
---------------------------------S-----------------SS-----------S---------------
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--------------S-------------S----S----------------------------------------------
----------------------------------------S---------------------------------------
-S------------------------------------------------------------------S-----S-----
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----------------------------S---------------------------------------------------
------SS------------------------------------------------SSSSSSS-S-S-------------
-------------------------------S------------------------------------------------
-----S---------------------------------------------------S----------------------
-------S--S-----------------------------------------------------S--S-------S----
----------------------------S---------------------------------------------------
---------S----------------------------------------------------------------------
------------------------S---------------------S---------------------------------
---------------------------------------------------------------S----------------
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--------------------------------------------------------------------S-----------
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------------------------------------------S-------------------------------------
S-------------------------------------------------------------------------------
----------------------S-----------------------------------------------S---------
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------------------------------------------------S-------------------------------
--------------------------------------------------------------------SS-SS-------
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>forward_834
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--------------GTGTGTACTGTCTGCTCGCT----------------------------------------------
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>reverse_1705
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------------------------CATCGAGCATGACCCAAGTAC-----------------------------------
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